Wall clock time and date at job start Tue Mar 31 2020 11:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46575 * 2 1 4 4 C 1.52995 * 109.47059 * 119.99779 * 2 1 3 5 5 C 1.52995 * 109.47342 * 295.70445 * 4 2 1 6 6 H 1.08998 * 108.76210 * 56.04763 * 5 4 2 7 7 C 1.45866 * 108.79691 * 174.40659 * 5 4 2 8 8 C 1.54506 * 111.60094 * 182.21614 * 7 5 4 9 9 C 1.50462 * 108.83998 * 282.79459 * 8 7 5 10 10 C 1.54287 * 113.03227 * 92.16352 * 9 8 7 11 11 C 1.54070 * 112.28459 * 318.29765 * 10 9 8 12 12 N 1.44263 * 111.98749 * 318.91273 * 11 10 9 13 13 N 1.46903 * 109.47372 * 240.00218 * 2 1 3 14 14 C 1.46901 * 111.00099 * 86.22983 * 13 2 1 15 15 C 1.50693 * 109.46926 * 180.02562 * 14 13 2 16 16 C 1.38638 * 119.75271 * 89.99715 * 15 14 13 17 17 C 1.37618 * 120.25256 * 180.02562 * 16 15 14 18 18 C 1.40718 * 119.74368 * 359.97438 * 17 16 15 19 19 C 1.41393 * 120.24616 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99345 * 331.79828 * 19 18 17 21 21 C 1.39943 * 120.00009 * 151.80207 * 19 18 17 22 22 N 1.30824 * 120.00299 * 348.31504 * 21 19 18 23 23 Si 1.86799 * 119.99774 * 168.32042 * 21 19 18 24 24 H 1.48502 * 109.46995 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.46988 * 299.99776 * 23 21 19 26 26 H 1.48501 * 109.47512 * 59.99710 * 23 21 19 27 27 C 1.40719 * 119.50871 * 0.27227 * 18 17 16 28 28 C 1.37616 * 119.74525 * 359.44581 * 27 18 17 29 29 H 1.08995 * 109.47586 * 299.99871 * 1 2 3 30 30 H 1.09002 * 109.47536 * 60.00309 * 1 2 3 31 31 H 1.09006 * 109.47263 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47303 * 55.71181 * 4 2 1 33 33 H 1.09005 * 109.47036 * 175.70639 * 4 2 1 34 34 H 1.09004 * 109.05518 * 302.75485 * 7 5 4 35 35 H 1.08995 * 109.05568 * 61.66459 * 7 5 4 36 36 H 1.09000 * 109.57501 * 42.59790 * 8 7 5 37 37 H 1.08995 * 109.57717 * 162.98411 * 8 7 5 38 38 H 1.09006 * 108.77061 * 213.07398 * 9 8 7 39 39 H 1.08997 * 108.77473 * 331.24374 * 9 8 7 40 40 H 1.09000 * 108.92269 * 79.02000 * 10 9 8 41 41 H 1.09000 * 108.91751 * 197.67390 * 10 9 8 42 42 H 1.08997 * 108.97672 * 79.55927 * 11 10 9 43 43 H 1.09007 * 108.97799 * 198.26695 * 11 10 9 44 44 H 1.00903 * 111.00288 * 333.55729 * 12 11 10 45 45 H 1.00899 * 110.99689 * 210.18306 * 13 2 1 46 46 H 1.08992 * 109.47007 * 60.00005 * 14 13 2 47 47 H 1.09001 * 109.46901 * 300.00108 * 14 13 2 48 48 H 1.07999 * 119.87077 * 0.02562 * 16 15 14 49 49 H 1.07995 * 120.12767 * 179.97438 * 17 16 15 50 50 H 0.96995 * 119.99901 * 180.02562 * 22 21 19 51 51 H 1.07999 * 120.12728 * 179.72816 * 27 18 17 52 52 H 1.08007 * 119.87810 * 180.27245 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6201 0.0597 2.4961 6 1 0.5369 0.1808 2.4857 7 6 1.9960 -0.7063 3.6791 8 6 1.5512 0.0002 4.9792 9 6 2.5018 1.1302 5.2679 10 6 2.0394 2.4755 4.6706 11 6 1.4700 2.3181 3.2476 12 7 2.2469 1.3976 2.4537 13 7 2.0197 -0.6924 -1.1995 14 6 2.1102 0.2295 -2.3396 15 6 2.6143 -0.5151 -3.5488 16 6 1.7119 -1.1234 -4.4078 17 6 2.1610 -1.8064 -5.5149 18 6 3.5419 -1.8856 -5.7737 19 6 4.0150 -2.5842 -6.9083 20 1 3.4434 -3.4062 -7.3133 21 6 5.2237 -2.2105 -7.5065 22 7 5.8007 -1.0861 -7.1685 23 14 6.0132 -3.3173 -8.7875 24 1 7.2769 -2.6996 -9.2640 25 1 6.3060 -4.6422 -8.1841 26 1 5.0842 -3.4896 -9.9332 27 6 4.4488 -1.2687 -4.8921 28 6 3.9768 -0.5861 -3.7944 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6152 -1.7242 1.2885 33 1 3.1273 -0.7883 1.2116 34 1 1.5276 -1.6893 3.6303 35 1 3.0788 -0.8298 3.6938 36 1 0.5427 0.3943 4.8540 37 1 1.5674 -0.7108 5.8052 38 1 2.5977 1.2406 6.3481 39 1 3.4791 0.8806 4.8550 40 1 1.2698 2.9020 5.3140 41 1 2.8889 3.1576 4.6363 42 1 0.4456 1.9515 3.3143 43 1 1.4652 3.2920 2.7580 44 1 3.2024 1.3595 2.7758 45 1 2.9079 -1.1373 -1.0228 46 1 2.7984 1.0394 -2.0981 47 1 1.1240 0.6421 -2.5523 48 1 0.6526 -1.0609 -4.2073 49 1 1.4563 -2.2799 -6.1824 50 1 6.6382 -0.8269 -7.5834 51 1 5.5110 -1.3270 -5.0788 52 1 4.6708 -0.1081 -3.1188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563155002.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:11 Heat of formation + Delta-G solvation = -19.551785 kcal Electronic energy + Delta-G solvation = -26103.971042 eV Core-core repulsion = 22679.755250 eV Total energy + Delta-G solvation = -3424.215792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.64163 -39.57301 -37.79724 -35.71482 -34.45688 -33.72638 -32.52590 -31.15174 -30.53063 -28.28709 -27.75229 -26.48859 -25.13883 -24.02387 -22.84146 -22.04855 -21.56605 -20.97885 -20.48310 -19.17850 -17.28374 -16.83342 -16.77139 -16.57866 -15.98466 -15.95308 -15.63900 -15.43885 -15.36223 -15.01856 -14.86004 -14.23854 -13.84211 -13.78897 -13.72912 -13.61952 -13.38721 -13.28325 -13.14463 -13.07035 -12.85271 -12.72680 -12.55526 -12.36088 -12.07354 -12.00853 -11.85191 -11.73324 -11.55602 -11.51049 -11.35044 -11.25356 -11.21831 -11.05388 -10.99831 -9.35725 -9.26771 -9.19932 -9.04272 -8.56603 -6.32552 0.97762 1.18286 1.38405 1.50063 1.53477 2.22945 2.75122 3.36404 3.40673 3.71586 3.84066 3.90341 4.00504 4.06781 4.17002 4.25499 4.33804 4.36335 4.38579 4.49090 4.57290 4.63250 4.65711 4.70800 4.78086 4.79850 4.84951 4.91365 4.92981 5.03987 5.07040 5.07385 5.09523 5.15215 5.19714 5.23485 5.24675 5.29419 5.34643 5.35703 5.40983 5.44246 5.50535 5.56749 5.75288 5.99403 6.13866 6.23349 6.26624 6.37264 6.43714 6.57457 6.65373 6.73989 6.98027 7.07145 8.39876 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028367 B = 0.002062 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.816458 B =13577.653272 C =13843.870977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.092 3.908 3 H 0.049 0.951 4 C -0.104 4.104 5 C 0.092 3.908 6 H 0.078 0.922 7 C -0.145 4.145 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.146 4.146 11 C 0.057 3.943 12 N -0.673 5.673 13 N -0.689 5.689 14 C 0.135 3.865 15 C -0.191 4.191 16 C -0.077 4.077 17 C -0.240 4.240 18 C 0.076 3.924 19 C -0.504 4.504 20 H 0.072 0.928 21 C 0.030 3.970 22 N -0.835 5.835 23 Si 0.984 3.016 24 H -0.268 1.268 25 H -0.261 1.261 26 H -0.261 1.261 27 C -0.182 4.182 28 C -0.101 4.101 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.341 0.659 45 H 0.336 0.664 46 H 0.023 0.977 47 H 0.066 0.934 48 H 0.111 0.889 49 H 0.095 0.905 50 H 0.286 0.714 51 H 0.100 0.900 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 4.850 23.817 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.017 4.017 3 H 0.067 0.933 4 C -0.142 4.142 5 C -0.018 4.018 6 H 0.096 0.904 7 C -0.184 4.184 8 C -0.154 4.154 9 C -0.160 4.160 10 C -0.186 4.186 11 C -0.073 4.073 12 N -0.303 5.303 13 N -0.320 5.320 14 C 0.007 3.993 15 C -0.192 4.192 16 C -0.096 4.096 17 C -0.259 4.259 18 C 0.074 3.926 19 C -0.534 4.534 20 H 0.091 0.909 21 C -0.183 4.183 22 N -0.462 5.462 23 Si 0.805 3.195 24 H -0.192 1.192 25 H -0.185 1.185 26 H -0.185 1.185 27 C -0.201 4.201 28 C -0.120 4.120 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.159 0.841 45 H 0.154 0.846 46 H 0.041 0.959 47 H 0.084 0.916 48 H 0.129 0.871 49 H 0.113 0.887 50 H 0.096 0.904 51 H 0.118 0.882 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.863 4.980 22.973 24.488 hybrid contribution 1.528 -0.136 0.211 1.549 sum -5.335 4.844 23.184 24.278 Atomic orbital electron populations 1.21752 0.95012 1.01315 1.00787 1.21421 0.95538 0.96453 0.88326 0.93348 1.21755 1.00332 0.98593 0.93557 1.20444 0.99319 0.88813 0.93266 0.90381 1.21258 1.01804 1.00227 0.95077 1.21357 0.99517 0.97365 0.97133 1.21365 0.99092 0.94473 1.01028 1.22584 1.01466 0.97346 0.97164 1.21819 0.97367 0.97069 0.91095 1.60970 1.06124 1.07279 1.55893 1.60645 1.34054 1.32450 1.04887 1.20428 0.98835 0.91874 0.88180 1.19382 0.92574 1.07774 0.99508 1.20639 0.98184 0.96752 0.93981 1.21226 0.94879 1.08519 1.01292 1.17979 0.91729 0.90779 0.92080 1.19785 1.05930 1.15944 1.11723 0.90938 1.26751 0.96376 0.95762 0.99380 1.69860 1.16816 1.20268 1.39298 0.85223 0.77802 0.78705 0.77747 1.19222 1.18496 1.18514 1.21281 0.99072 1.04252 0.95542 1.20779 0.95012 0.99224 0.96951 0.91503 0.94273 0.93066 0.91362 0.92628 0.91081 0.92004 0.91744 0.91181 0.91629 0.92578 0.91265 0.91921 0.91899 0.91736 0.84097 0.84630 0.95878 0.91584 0.87104 0.88725 0.90396 0.88226 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.17 71.98 0.66 -2.33 16 2 C 0.09 2.23 2.62 44.91 0.12 2.35 16 3 H 0.05 1.29 7.15 -2.39 -0.02 1.27 16 4 C -0.10 -2.04 4.30 30.59 0.13 -1.91 16 5 C 0.09 1.41 1.79 42.55 0.08 1.49 16 6 H 0.08 1.25 5.40 -2.39 -0.01 1.23 16 7 C -0.14 -1.88 4.53 28.92 0.13 -1.75 16 8 C -0.12 -1.28 5.60 30.29 0.17 -1.11 16 9 C -0.12 -1.30 5.28 30.21 0.16 -1.14 16 10 C -0.15 -1.59 5.92 31.39 0.19 -1.40 16 11 C 0.06 0.77 6.01 87.16 0.52 1.29 16 12 N -0.67 -10.66 5.70 -505.03 -2.88 -13.54 16 13 N -0.69 -21.10 6.30 -495.60 -3.12 -24.23 16 14 C 0.14 4.71 5.60 85.55 0.48 5.19 16 15 C -0.19 -8.27 5.41 -19.68 -0.11 -8.38 16 16 C -0.08 -3.51 9.67 22.22 0.21 -3.30 16 17 C -0.24 -12.32 9.80 22.73 0.22 -12.10 16 18 C 0.08 4.31 5.55 -21.29 -0.12 4.19 16 19 C -0.50 -28.29 9.06 23.46 0.21 -28.08 16 20 H 0.07 3.93 7.87 -2.91 -0.02 3.91 16 21 C 0.03 1.59 5.24 85.26 0.45 2.04 16 22 N -0.84 -45.33 10.87 21.83 0.24 -45.09 16 23 Si 0.98 39.64 29.58 68.60 2.03 41.67 16 24 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 26 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 27 C -0.18 -9.90 8.66 22.73 0.20 -9.70 16 28 C -0.10 -4.76 9.67 22.22 0.21 -4.55 16 29 H 0.07 1.27 6.45 -2.39 -0.02 1.26 16 30 H 0.04 0.97 7.54 -2.39 -0.02 0.95 16 31 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.07 1.37 8.07 -2.39 -0.02 1.35 16 33 H 0.05 1.14 8.04 -2.38 -0.02 1.12 16 34 H 0.07 0.92 8.07 -2.38 -0.02 0.90 16 35 H 0.06 0.84 7.59 -2.39 -0.02 0.82 16 36 H 0.06 0.73 7.15 -2.39 -0.02 0.71 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.06 0.64 6.79 -2.39 -0.02 0.63 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.85 6.51 -2.39 -0.02 0.83 16 43 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.34 5.20 7.36 -89.69 -0.66 4.54 16 45 H 0.34 10.49 8.26 -89.69 -0.74 9.75 16 46 H 0.02 0.79 7.99 -2.39 -0.02 0.77 16 47 H 0.07 2.23 7.46 -2.39 -0.02 2.22 16 48 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 49 H 0.09 4.63 8.06 -2.91 -0.02 4.61 16 50 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 51 H 0.10 5.68 6.23 -2.91 -0.02 5.67 16 52 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -59.17 392.89 -0.32 -59.49 By element: Atomic # 1 Polarization: 41.40 SS G_CDS: -0.50 Total: 40.90 kcal Atomic # 6 Polarization: -63.11 SS G_CDS: 3.92 Total: -59.20 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -5.76 Total: -82.86 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -59.17 -0.32 -59.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563155002.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.941 kcal (2) G-P(sol) polarization free energy of solvation -59.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds