Wall clock time and date at job start Tue Mar 31 2020 11:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46688 * 2 1 4 4 C 1.53005 * 109.46862 * 119.99282 * 2 1 3 5 5 C 1.53005 * 109.46905 * 184.99858 * 4 2 1 6 6 H 1.09002 * 109.01204 * 303.91862 * 5 4 2 7 7 C 1.54429 * 109.02191 * 185.00201 * 5 4 2 8 8 C 1.50758 * 109.04002 * 162.11708 * 7 5 4 9 9 C 1.54166 * 112.61858 * 93.00760 * 8 7 5 10 10 C 1.53822 * 111.96897 * 318.48375 * 9 8 7 11 11 C 1.50819 * 111.61527 * 319.04634 * 10 9 8 12 12 N 1.39786 * 108.95693 * 62.79128 * 5 4 2 13 13 N 1.46893 * 109.47413 * 239.99444 * 2 1 3 14 14 C 1.46904 * 110.99888 * 85.00092 * 13 2 1 15 15 C 1.50697 * 109.47197 * 180.02562 * 14 13 2 16 16 C 1.38641 * 119.74568 * 269.72242 * 15 14 13 17 17 C 1.37617 * 120.24704 * 179.76255 * 16 15 14 18 18 C 1.40719 * 119.74385 * 0.49012 * 17 16 15 19 19 C 1.41394 * 120.24362 * 179.78566 * 18 17 16 20 20 H 1.08001 * 120.00023 * 204.36703 * 19 18 17 21 21 C 1.39940 * 120.00186 * 24.37410 * 19 18 17 22 22 N 1.30823 * 119.99874 * 17.87442 * 21 19 18 23 23 Si 1.86799 * 120.00415 * 197.87705 * 21 19 18 24 24 H 1.48507 * 109.46819 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47320 * 119.99375 * 23 21 19 26 26 H 1.48497 * 109.47309 * 240.00124 * 23 21 19 27 27 C 1.40717 * 119.51291 * 359.76398 * 18 17 16 28 28 C 1.37614 * 119.74368 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.47244 * 300.00298 * 1 2 3 30 30 H 1.09002 * 109.47185 * 60.00217 * 1 2 3 31 31 H 1.09004 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47115 * 65.00822 * 4 2 1 33 33 H 1.08990 * 109.47307 * 305.00104 * 4 2 1 34 34 H 1.09001 * 109.54384 * 281.98227 * 7 5 4 35 35 H 1.09003 * 109.54763 * 42.24925 * 7 5 4 36 36 H 1.09003 * 108.84987 * 213.81831 * 8 7 5 37 37 H 1.09004 * 108.85118 * 332.19460 * 8 7 5 38 38 H 1.08997 * 108.98452 * 197.84716 * 9 8 7 39 39 H 1.09004 * 108.98239 * 79.12233 * 9 8 7 40 40 H 1.09003 * 109.05166 * 198.49426 * 10 9 8 41 41 H 1.09002 * 108.99375 * 79.55413 * 10 9 8 42 42 H 1.09002 * 109.74975 * 335.43421 * 11 10 9 43 43 H 1.08999 * 109.78889 * 214.72199 * 11 10 9 44 44 H 1.00897 * 111.00354 * 309.68035 * 12 5 4 45 45 H 1.00899 * 110.99876 * 321.05012 * 13 2 1 46 46 H 1.09003 * 109.46903 * 300.00096 * 14 13 2 47 47 H 1.08992 * 109.47237 * 59.99879 * 14 13 2 48 48 H 1.07997 * 119.87358 * 359.97438 * 16 15 14 49 49 H 1.07995 * 120.12873 * 180.27698 * 17 16 15 50 50 H 0.97002 * 120.00229 * 180.02562 * 22 21 19 51 51 H 1.07996 * 120.12748 * 180.02562 * 27 18 17 52 52 H 1.08001 * 119.87578 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5649 -0.6132 1.3138 6 1 3.9883 -1.0118 0.3919 7 6 4.0787 -1.4490 2.5064 8 6 5.5522 -1.7107 2.3250 9 6 6.4323 -0.6569 3.0262 10 6 5.8805 0.7673 2.8437 11 6 5.3737 0.9913 1.4410 12 7 3.9201 0.7335 1.4335 13 7 2.0197 -0.6926 -1.1993 14 6 2.0826 0.2225 -2.3468 15 6 2.5875 -0.5220 -3.5559 16 6 3.9483 -0.5666 -3.8175 17 6 4.4210 -1.2476 -4.9160 18 6 3.5167 -1.8914 -5.7807 19 6 3.9905 -2.5902 -6.9149 20 1 3.3429 -2.7405 -7.7661 21 6 5.2985 -3.0872 -6.9345 22 7 5.9630 -3.2244 -5.8160 23 14 6.0959 -3.5547 -8.5578 24 1 5.1408 -3.3072 -9.6678 25 1 7.3174 -2.7355 -8.7634 26 1 6.4630 -4.9933 -8.5329 27 6 2.1373 -1.8349 -5.5082 28 6 1.6874 -1.1519 -4.4015 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7517 -1.7714 1.2058 33 1 1.6054 -0.2616 2.1370 34 1 3.9175 -0.8989 3.4335 35 1 3.5421 -2.3970 2.5454 36 1 5.7881 -2.6939 2.7322 37 1 5.7817 -1.7087 1.2594 38 1 7.4391 -0.7027 2.6111 39 1 6.4786 -0.8854 4.0910 40 1 6.6727 1.4856 3.0548 41 1 5.0622 0.9235 3.5467 42 1 5.8728 0.3065 0.7553 43 1 5.5667 2.0206 1.1389 44 1 3.4572 1.2932 0.7332 45 1 1.4496 -1.4980 -1.4098 46 1 1.0871 0.6161 -2.5525 47 1 2.7589 1.0460 -2.1182 48 1 4.6401 -0.0679 -3.1549 49 1 5.4817 -1.2848 -5.1155 50 1 6.8698 -3.5686 -5.8296 51 1 1.4345 -2.3258 -6.1650 52 1 0.6292 -1.1075 -4.1901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563155004.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:18 Heat of formation + Delta-G solvation = -3.658650 kcal Electronic energy + Delta-G solvation = -26840.997089 eV Core-core repulsion = 23417.470475 eV Total energy + Delta-G solvation = -3423.526614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.48282 -37.86200 -36.64831 -34.12790 -33.39823 -32.50367 -31.23487 -29.35514 -28.97102 -27.36509 -26.01049 -25.74796 -23.69045 -22.90441 -21.06613 -20.88050 -20.05335 -19.76677 -19.23569 -17.29210 -16.70911 -15.74104 -15.36764 -15.17257 -14.71652 -14.65373 -14.43710 -14.07644 -13.99940 -13.71745 -13.30698 -13.13830 -12.96245 -12.53294 -12.46480 -12.18520 -12.04021 -11.94487 -11.93588 -11.63789 -11.56424 -11.20522 -11.09062 -11.05344 -10.94258 -10.91196 -10.57069 -10.51742 -10.41106 -10.36015 -10.26850 -10.04584 -9.57452 -9.36691 -9.12493 -8.20680 -7.91866 -7.43585 -7.29134 -6.75594 -4.34492 2.74180 3.06697 3.08788 3.12252 3.17459 3.93104 4.28595 4.47076 4.73876 4.78217 4.85165 4.86731 5.04706 5.13773 5.20390 5.28972 5.41175 5.45910 5.59889 5.65472 5.67802 5.70648 5.76280 5.79743 5.85297 5.86311 5.91430 5.99091 6.02179 6.10993 6.12202 6.18548 6.21869 6.25022 6.30397 6.32682 6.36152 6.43911 6.45404 6.58668 6.96255 7.07696 7.30511 7.36881 7.44805 7.47205 7.62134 7.67467 7.76154 7.91494 8.06626 8.15812 8.31084 8.65600 8.90416 8.98808 10.18634 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.003149 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.228082 B = 8888.449942 C =10410.127105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.076 3.924 3 H 0.073 0.927 4 C -0.102 4.102 5 C 0.110 3.890 6 H 0.048 0.952 7 C -0.112 4.112 8 C -0.123 4.123 9 C -0.116 4.116 10 C -0.116 4.116 11 C 0.067 3.933 12 N -0.699 5.699 13 N -0.677 5.677 14 C 0.126 3.874 15 C -0.212 4.212 16 C -0.079 4.079 17 C -0.167 4.167 18 C 0.112 3.888 19 C -0.463 4.463 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.791 5.791 23 Si 0.906 3.094 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.275 1.275 27 C -0.228 4.228 28 C -0.085 4.085 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.342 0.658 45 H 0.340 0.660 46 H 0.017 0.983 47 H 0.057 0.943 48 H 0.084 0.916 49 H 0.116 0.884 50 H 0.279 0.721 51 H 0.089 0.911 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.415 5.730 15.100 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.034 4.034 3 H 0.091 0.909 4 C -0.140 4.140 5 C -0.001 4.001 6 H 0.066 0.934 7 C -0.150 4.150 8 C -0.160 4.160 9 C -0.154 4.154 10 C -0.154 4.154 11 C -0.062 4.062 12 N -0.333 5.333 13 N -0.308 5.308 14 C -0.002 4.002 15 C -0.214 4.214 16 C -0.098 4.098 17 C -0.187 4.187 18 C 0.110 3.890 19 C -0.493 4.493 20 H 0.095 0.905 21 C -0.142 4.142 22 N -0.416 5.416 23 Si 0.730 3.270 24 H -0.184 1.184 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.247 4.247 28 C -0.104 4.104 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.164 0.836 45 H 0.159 0.841 46 H 0.035 0.965 47 H 0.076 0.924 48 H 0.102 0.898 49 H 0.134 0.866 50 H 0.090 0.910 51 H 0.108 0.892 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.534 5.671 16.001 17.046 hybrid contribution -0.339 -0.431 -1.805 1.887 sum -1.873 5.240 14.196 15.248 Atomic orbital electron populations 1.22488 0.97803 1.01911 1.01733 1.21644 0.92168 0.97940 0.91655 0.90894 1.21724 0.95172 1.00595 0.96522 1.20266 0.94696 0.88318 0.96868 0.93381 1.21516 0.95195 0.99326 0.98952 1.21410 0.95348 0.98103 1.01158 1.21906 0.98685 0.94853 0.99971 1.21420 1.00295 0.95863 0.97842 1.21575 0.87784 1.00170 0.96655 1.57489 1.09351 1.09830 1.56647 1.60770 1.56852 1.09710 1.03446 1.20552 0.97326 0.93690 0.88590 1.18899 0.93655 1.10134 0.98676 1.20460 0.93619 0.98906 0.96781 1.21303 0.99888 1.00501 0.96971 1.17618 0.90774 0.88843 0.91790 1.19624 0.96981 1.30973 1.01729 0.90517 1.25903 0.97159 0.93558 0.97534 1.69844 1.11470 1.32909 1.27420 0.86308 0.79567 0.78581 0.82544 1.18423 1.19705 1.20006 1.20927 0.95733 1.07967 1.00096 1.20341 0.96245 0.98228 0.95579 0.92496 0.92840 0.92599 0.91769 0.91681 0.91484 0.91969 0.92683 0.92039 0.92658 0.92700 0.92610 0.90898 0.93972 0.91650 0.83574 0.84133 0.96462 0.92430 0.89774 0.86609 0.90967 0.89236 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.16 37.16 0.34 -1.62 16 2 C 0.08 0.92 2.41 -67.71 -0.16 0.75 16 3 H 0.07 0.88 5.90 -51.93 -0.31 0.57 16 4 C -0.10 -1.16 4.49 -26.73 -0.12 -1.28 16 5 C 0.11 1.34 2.09 -70.63 -0.15 1.20 16 6 H 0.05 0.75 7.02 -51.93 -0.36 0.38 16 7 C -0.11 -1.26 5.00 -27.11 -0.14 -1.40 16 8 C -0.12 -1.39 5.31 -27.24 -0.14 -1.53 16 9 C -0.12 -1.18 5.91 -25.69 -0.15 -1.33 16 10 C -0.12 -1.17 5.41 -27.40 -0.15 -1.31 16 11 C 0.07 0.75 6.22 -4.52 -0.03 0.72 16 12 N -0.70 -8.07 5.72 -111.15 -0.64 -8.70 16 13 N -0.68 -10.17 5.61 -107.99 -0.61 -10.78 16 14 C 0.13 2.12 5.60 -4.98 -0.03 2.10 16 15 C -0.21 -4.48 5.41 -104.33 -0.56 -5.05 16 16 C -0.08 -1.83 9.67 -39.66 -0.38 -2.21 16 17 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 18 C 0.11 3.00 5.58 -106.82 -0.60 2.40 16 19 C -0.46 -12.37 9.05 -37.74 -0.34 -12.71 16 20 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 21 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 22 N -0.79 -20.59 10.95 55.55 0.61 -19.98 16 23 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 24 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 28 C -0.09 -1.87 9.67 -39.66 -0.38 -2.25 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.61 7.45 -51.93 -0.39 0.22 16 31 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.06 0.75 8.04 -51.93 -0.42 0.34 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.75 7.11 -51.93 -0.37 0.38 16 35 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.81 6.58 -51.93 -0.34 0.46 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.77 7.26 -51.93 -0.38 0.40 16 42 H 0.04 0.54 6.66 -51.93 -0.35 0.19 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.34 4.00 6.46 -39.29 -0.25 3.75 16 45 H 0.34 5.33 8.46 -39.29 -0.33 5.00 16 46 H 0.02 0.28 7.37 -51.93 -0.38 -0.10 16 47 H 0.06 0.95 7.99 -51.93 -0.42 0.53 16 48 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 49 H 0.12 3.13 6.15 -52.49 -0.32 2.81 16 50 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 51 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 52 H 0.08 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 393.74 15.07 5.93 5.93 Total: -1.00 -26.12 393.74 -12.76 -38.88 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -9.23 Total: 13.31 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: -3.80 Total: -32.34 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.63 Total: -39.46 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -26.12 -12.76 -38.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563155004.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.225 kcal (2) G-P(sol) polarization free energy of solvation -26.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds