Wall clock time and date at job start Tue Mar 31 2020 11:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 H 1.09001 * 109.46446 * 181.77522 * 3 2 1 5 5 C 1.50697 * 109.47259 * 61.77968 * 3 2 1 6 6 H 1.07996 * 120.00245 * 244.97601 * 5 3 2 7 7 C 1.37880 * 119.99853 * 64.97803 * 5 3 2 8 8 N 1.31511 * 120.00555 * 9.71045 * 7 5 3 9 9 Si 1.86801 * 119.99803 * 189.70953 * 7 5 3 10 10 H 1.48498 * 109.47305 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47159 * 300.00200 * 9 7 5 12 12 H 1.48504 * 109.47112 * 60.00079 * 9 7 5 13 13 N 1.46899 * 109.47144 * 301.77660 * 3 2 1 14 14 C 1.46902 * 110.99978 * 274.09303 * 13 3 2 15 15 C 1.50697 * 109.46998 * 184.30100 * 14 13 3 16 16 C 1.38233 * 120.00198 * 269.72798 * 15 14 13 17 17 C 1.38232 * 120.00236 * 179.77121 * 16 15 14 18 18 C 1.38237 * 120.00042 * 0.49533 * 17 16 15 19 19 C 1.50699 * 120.00199 * 179.72711 * 18 17 16 20 20 N 1.46896 * 109.47274 * 270.02928 * 19 18 17 21 21 C 1.46846 * 110.99736 * 294.20625 * 20 19 18 22 22 C 1.53038 * 109.52163 * 174.16147 * 21 20 19 23 23 C 1.53117 * 109.27978 * 59.18296 * 22 21 20 24 24 C 1.53123 * 109.15838 * 302.34548 * 23 22 21 25 25 C 1.46844 * 110.99980 * 170.00393 * 20 19 18 26 26 C 1.38233 * 119.99516 * 359.75768 * 18 17 16 27 27 C 1.38229 * 120.00386 * 359.97438 * 26 18 17 28 28 H 1.08993 * 109.47192 * 184.51272 * 1 2 3 29 29 H 1.08998 * 109.46825 * 304.51874 * 1 2 3 30 30 H 1.09000 * 109.47061 * 64.51460 * 1 2 3 31 31 H 1.08994 * 109.47112 * 239.99566 * 2 1 3 32 32 H 1.09006 * 109.46655 * 119.99749 * 2 1 3 33 33 H 0.97008 * 119.99528 * 357.02398 * 8 7 5 34 34 H 1.00899 * 110.99779 * 150.13751 * 13 3 2 35 35 H 1.08999 * 109.46909 * 304.29896 * 14 13 3 36 36 H 1.08998 * 109.47080 * 64.30019 * 14 13 3 37 37 H 1.08008 * 119.99788 * 359.97438 * 16 15 14 38 38 H 1.07995 * 120.00179 * 180.23201 * 17 16 15 39 39 H 1.09005 * 109.47012 * 30.02793 * 19 18 17 40 40 H 1.09000 * 109.47214 * 150.02279 * 19 18 17 41 41 H 1.09004 * 109.46768 * 294.18055 * 21 20 19 42 42 H 1.09005 * 109.46156 * 54.15112 * 21 20 19 43 43 H 1.08997 * 109.50823 * 299.23732 * 22 21 20 44 44 H 1.09007 * 109.50421 * 179.12045 * 22 21 20 45 45 H 1.09001 * 109.52571 * 182.44005 * 23 22 21 46 46 H 1.09008 * 109.52358 * 62.24527 * 23 22 21 47 47 H 1.08998 * 109.50333 * 297.70888 * 24 23 22 48 48 H 1.09007 * 109.49899 * 177.59445 * 24 23 22 49 49 H 1.09005 * 109.45917 * 305.84789 * 25 20 19 50 50 H 1.08995 * 109.46826 * 65.81830 * 25 20 19 51 51 H 1.08003 * 119.99572 * 179.97438 * 26 18 17 52 52 H 1.08007 * 119.99952 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4426 -0.0318 5 6 1.5740 2.1401 1.2519 6 1 0.8861 2.9698 1.1836 7 6 2.0260 1.7190 2.4846 8 7 3.0028 0.8420 2.5624 9 14 1.2507 2.3943 4.0442 10 1 1.9102 1.7869 5.2280 11 1 1.4220 3.8689 4.0837 12 1 -0.1969 2.0636 4.0607 13 7 1.5156 2.1473 -1.1774 14 6 2.3771 1.9310 -2.3474 15 6 1.8680 2.7513 -3.5045 16 6 0.9447 2.2122 -4.3807 17 6 0.4742 2.9663 -5.4394 18 6 0.9346 4.2560 -5.6279 19 6 0.4263 5.0759 -6.7856 20 7 1.2883 4.8590 -7.9551 21 6 2.6398 5.3816 -7.7169 22 6 3.5462 5.0105 -8.8928 23 6 2.9698 5.6025 -10.1819 24 6 1.5443 5.0803 -10.3812 25 6 0.6959 5.4494 -9.1622 26 6 1.8619 4.7932 -4.7547 27 6 2.3283 4.0411 -3.6929 28 1 -0.3633 -1.0244 0.0809 29 1 -0.3633 0.5824 0.8467 30 1 -0.3633 0.4422 -0.9277 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.3763 0.4589 1.7532 34 1 1.4025 3.1320 -0.9887 35 1 3.3967 2.2332 -2.1086 36 1 2.3648 0.8750 -2.6174 37 1 0.5884 1.2028 -4.2362 38 1 -0.2500 2.5464 -6.1217 39 1 -0.5934 4.7739 -7.0248 40 1 0.4386 6.1320 -6.5160 41 1 2.5977 6.4664 -7.6189 42 1 3.0398 4.9495 -6.7996 43 1 3.5998 3.9256 -8.9828 44 1 4.5453 5.4119 -8.7230 45 1 3.5887 5.3044 -11.0282 46 1 2.9523 6.6899 -10.1074 47 1 1.5663 3.9965 -10.4947 48 1 1.1131 5.5316 -11.2749 49 1 -0.3160 5.0665 -9.2946 50 1 0.6630 6.5338 -9.0575 51 1 2.2220 5.8007 -4.9023 52 1 3.0531 4.4608 -3.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564098473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:37 Heat of formation + Delta-G solvation = 4.078477 kcal Electronic energy + Delta-G solvation = -26231.318697 eV Core-core repulsion = 22808.127590 eV Total energy + Delta-G solvation = -3423.191107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.87386 -38.65824 -36.51201 -34.49776 -32.94317 -31.35821 -31.12576 -30.67108 -30.07450 -27.27161 -25.53180 -23.92728 -23.42934 -23.34937 -22.46557 -22.34188 -20.42730 -19.96349 -19.28241 -17.10335 -16.44466 -15.99503 -15.64384 -15.26009 -14.80653 -14.67857 -14.30742 -14.18049 -14.01177 -13.72987 -13.68168 -13.49637 -13.38903 -13.24502 -12.70709 -12.54654 -12.28911 -12.18742 -11.82624 -11.77315 -11.54617 -11.46104 -11.15077 -11.03979 -10.85531 -10.80931 -10.76780 -10.69180 -10.50472 -10.12251 -10.07856 -9.90217 -9.70353 -8.72897 -8.68484 -8.56716 -8.34209 -8.22497 -7.35848 -6.36393 -4.06303 1.46000 1.59874 3.43023 3.46167 3.57999 3.63859 4.07090 4.49361 4.51793 4.52574 4.61401 4.74103 4.87350 4.96116 5.08577 5.13946 5.16546 5.20633 5.22451 5.30840 5.36502 5.36793 5.44797 5.48983 5.56857 5.62083 5.64847 5.70673 5.75736 5.81961 5.89545 5.96520 6.05915 6.06720 6.24825 6.27248 6.34535 6.43716 6.56384 6.62655 6.68404 6.82527 6.88043 6.91933 6.98257 7.06970 7.18453 7.25704 7.49470 7.55219 7.88400 8.10899 8.51864 8.59047 8.87232 9.64354 11.00986 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028077 B = 0.002218 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.018782 B =12620.274917 C =12776.727978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C 0.203 3.797 4 H -0.007 1.007 5 C -0.595 4.595 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.672 5.672 14 C 0.094 3.906 15 C -0.064 4.064 16 C -0.100 4.100 17 C -0.100 4.100 18 C -0.089 4.089 19 C 0.098 3.902 20 N -0.532 5.532 21 C 0.051 3.949 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.116 4.116 25 C 0.055 3.945 26 C -0.115 4.115 27 C -0.116 4.116 28 H 0.017 0.983 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.018 0.982 32 H 0.058 0.942 33 H 0.270 0.730 34 H 0.335 0.665 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.039 0.961 41 H 0.029 0.971 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.031 0.969 51 H 0.113 0.887 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 9.010 -24.291 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.144 4.144 3 C 0.095 3.905 4 H 0.010 0.990 5 C -0.634 4.634 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.545 5.545 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.303 5.303 14 C -0.035 4.035 15 C -0.065 4.065 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.090 4.090 19 C -0.029 4.029 20 N -0.257 5.257 21 C -0.077 4.077 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.073 4.073 26 C -0.134 4.134 27 C -0.135 4.135 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.152 0.848 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.049 0.951 51 H 0.131 0.869 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.693 7.948 -22.867 24.358 hybrid contribution 0.628 1.465 -1.289 2.050 sum -2.064 9.413 -24.156 26.007 Atomic orbital electron populations 1.21425 0.96493 0.97812 1.01982 1.21493 0.96289 0.98294 0.98357 1.19271 0.92222 0.91342 0.87636 0.98997 1.21940 1.31151 1.18546 0.91744 0.92873 1.25710 0.94781 0.96078 1.01597 1.70805 1.22037 1.28881 1.32784 0.83585 0.75801 0.75604 0.75577 1.20895 1.21603 1.21337 1.60684 1.49003 1.16107 1.04470 1.20950 0.94297 0.98451 0.89851 1.20024 0.96153 0.94379 0.95961 1.21031 0.96524 1.00090 0.94230 1.20912 0.99908 0.93512 0.97489 1.19540 0.98317 0.95114 0.96031 1.20980 0.96549 0.96972 0.88399 1.61924 1.02389 1.58788 1.02552 1.22192 0.89138 0.96971 0.99404 1.21584 0.97955 1.01826 0.94131 1.21588 0.96429 1.00014 0.97904 1.21581 0.95151 1.01994 0.96696 1.22089 0.98277 0.96695 0.90206 1.20897 0.97737 0.99377 0.95382 1.21028 1.00527 0.94167 0.97734 0.96390 0.92173 0.93368 0.96293 0.92338 0.91840 0.84784 0.95467 0.91186 0.86064 0.86433 0.90057 0.94250 0.95255 0.89867 0.91041 0.91665 0.91907 0.92456 0.91022 0.91696 0.90781 0.95124 0.86919 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.52 37.16 0.35 -2.28 16 2 C -0.11 -2.50 5.49 -26.73 -0.15 -2.64 16 3 C 0.20 5.01 1.93 -68.86 -0.13 4.88 16 4 H -0.01 -0.20 7.08 -51.93 -0.37 -0.57 16 5 C -0.60 -16.14 7.24 -34.44 -0.25 -16.39 16 6 H 0.05 1.45 7.67 -52.49 -0.40 1.05 16 7 C 0.02 0.65 5.18 -17.82 -0.09 0.55 16 8 N -0.91 -26.84 13.04 55.43 0.72 -26.12 16 9 Si 1.07 24.94 29.91 -169.99 -5.09 19.85 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.67 -14.15 5.57 -109.22 -0.61 -14.75 16 14 C 0.09 1.69 5.66 -4.98 -0.03 1.67 16 15 C -0.06 -1.01 5.35 -104.63 -0.56 -1.57 16 16 C -0.10 -1.45 9.70 -39.59 -0.38 -1.84 16 17 C -0.10 -1.27 9.70 -39.58 -0.38 -1.66 16 18 C -0.09 -1.08 4.89 -104.62 -0.51 -1.59 16 19 C 0.10 0.97 5.12 -4.98 -0.03 0.94 16 20 N -0.53 -5.12 4.65 -236.11 -1.10 -6.22 16 21 C 0.05 0.47 5.16 -3.83 -0.02 0.46 16 22 C -0.12 -0.96 6.09 -26.65 -0.16 -1.12 16 23 C -0.12 -0.86 6.00 -26.61 -0.16 -1.02 16 24 C -0.12 -0.82 6.09 -26.65 -0.16 -0.98 16 25 C 0.06 0.43 5.46 -3.84 -0.02 0.41 16 26 C -0.12 -1.44 7.88 -39.59 -0.31 -1.76 16 27 C -0.12 -1.66 9.70 -39.59 -0.38 -2.05 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 1.43 7.12 -51.93 -0.37 1.06 16 30 H 0.05 1.01 7.71 -51.93 -0.40 0.61 16 31 H 0.02 0.41 7.64 -51.93 -0.40 0.01 16 32 H 0.06 1.51 6.37 -51.93 -0.33 1.18 16 33 H 0.27 7.97 6.03 -40.82 -0.25 7.73 16 34 H 0.33 7.16 8.17 -39.29 -0.32 6.84 16 35 H 0.03 0.51 7.89 -51.93 -0.41 0.10 16 36 H 0.07 1.27 7.58 -51.93 -0.39 0.87 16 37 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.08 0.74 7.93 -51.93 -0.41 0.32 16 40 H 0.04 0.38 8.07 -51.93 -0.42 -0.04 16 41 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.88 5.75 -51.93 -0.30 0.58 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.54 8.02 -51.93 -0.42 0.12 16 50 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.11 1.21 7.95 -52.48 -0.42 0.80 16 52 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -28.82 399.08 -12.90 -41.73 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -9.47 Total: 5.47 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -3.38 Total: -25.98 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.98 Total: -47.09 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.09 Total: 19.85 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.82 -12.90 -41.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564098473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.808 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds