Wall clock time and date at job start Tue Mar 31 2020 11:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 H 1.09001 * 109.46446 * 181.77522 * 3 2 1 5 5 C 1.50697 * 109.47259 * 61.77968 * 3 2 1 6 6 H 1.07996 * 120.00245 * 244.97601 * 5 3 2 7 7 C 1.37880 * 119.99853 * 64.97803 * 5 3 2 8 8 N 1.31511 * 120.00555 * 9.71045 * 7 5 3 9 9 Si 1.86801 * 119.99803 * 189.70953 * 7 5 3 10 10 H 1.48498 * 109.47305 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47159 * 300.00200 * 9 7 5 12 12 H 1.48504 * 109.47112 * 60.00079 * 9 7 5 13 13 N 1.46899 * 109.47144 * 301.77660 * 3 2 1 14 14 C 1.46902 * 110.99978 * 274.09303 * 13 3 2 15 15 C 1.50697 * 109.46998 * 184.30100 * 14 13 3 16 16 C 1.38233 * 120.00198 * 269.72798 * 15 14 13 17 17 C 1.38232 * 120.00236 * 179.77121 * 16 15 14 18 18 C 1.38237 * 120.00042 * 0.49533 * 17 16 15 19 19 C 1.50699 * 120.00199 * 179.72711 * 18 17 16 20 20 N 1.46896 * 109.47274 * 270.02928 * 19 18 17 21 21 C 1.46846 * 110.99736 * 294.20625 * 20 19 18 22 22 C 1.53038 * 109.52163 * 174.16147 * 21 20 19 23 23 C 1.53117 * 109.27978 * 59.18296 * 22 21 20 24 24 C 1.53123 * 109.15838 * 302.34548 * 23 22 21 25 25 C 1.46844 * 110.99980 * 170.00393 * 20 19 18 26 26 C 1.38233 * 119.99516 * 359.75768 * 18 17 16 27 27 C 1.38229 * 120.00386 * 359.97438 * 26 18 17 28 28 H 1.08993 * 109.47192 * 184.51272 * 1 2 3 29 29 H 1.08998 * 109.46825 * 304.51874 * 1 2 3 30 30 H 1.09000 * 109.47061 * 64.51460 * 1 2 3 31 31 H 1.08994 * 109.47112 * 239.99566 * 2 1 3 32 32 H 1.09006 * 109.46655 * 119.99749 * 2 1 3 33 33 H 0.97008 * 119.99528 * 357.02398 * 8 7 5 34 34 H 1.00899 * 110.99779 * 150.13751 * 13 3 2 35 35 H 1.08999 * 109.46909 * 304.29896 * 14 13 3 36 36 H 1.08998 * 109.47080 * 64.30019 * 14 13 3 37 37 H 1.08008 * 119.99788 * 359.97438 * 16 15 14 38 38 H 1.07995 * 120.00179 * 180.23201 * 17 16 15 39 39 H 1.09005 * 109.47012 * 30.02793 * 19 18 17 40 40 H 1.09000 * 109.47214 * 150.02279 * 19 18 17 41 41 H 1.09004 * 109.46768 * 294.18055 * 21 20 19 42 42 H 1.09005 * 109.46156 * 54.15112 * 21 20 19 43 43 H 1.08997 * 109.50823 * 299.23732 * 22 21 20 44 44 H 1.09007 * 109.50421 * 179.12045 * 22 21 20 45 45 H 1.09001 * 109.52571 * 182.44005 * 23 22 21 46 46 H 1.09008 * 109.52358 * 62.24527 * 23 22 21 47 47 H 1.08998 * 109.50333 * 297.70888 * 24 23 22 48 48 H 1.09007 * 109.49899 * 177.59445 * 24 23 22 49 49 H 1.09005 * 109.45917 * 305.84789 * 25 20 19 50 50 H 1.08995 * 109.46826 * 65.81830 * 25 20 19 51 51 H 1.08003 * 119.99572 * 179.97438 * 26 18 17 52 52 H 1.08007 * 119.99952 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4426 -0.0318 5 6 1.5740 2.1401 1.2519 6 1 0.8861 2.9698 1.1836 7 6 2.0260 1.7190 2.4846 8 7 3.0028 0.8420 2.5624 9 14 1.2507 2.3943 4.0442 10 1 1.9102 1.7869 5.2280 11 1 1.4220 3.8689 4.0837 12 1 -0.1969 2.0636 4.0607 13 7 1.5156 2.1473 -1.1774 14 6 2.3771 1.9310 -2.3474 15 6 1.8680 2.7513 -3.5045 16 6 0.9447 2.2122 -4.3807 17 6 0.4742 2.9663 -5.4394 18 6 0.9346 4.2560 -5.6279 19 6 0.4263 5.0759 -6.7856 20 7 1.2883 4.8590 -7.9551 21 6 2.6398 5.3816 -7.7169 22 6 3.5462 5.0105 -8.8928 23 6 2.9698 5.6025 -10.1819 24 6 1.5443 5.0803 -10.3812 25 6 0.6959 5.4494 -9.1622 26 6 1.8619 4.7932 -4.7547 27 6 2.3283 4.0411 -3.6929 28 1 -0.3633 -1.0244 0.0809 29 1 -0.3633 0.5824 0.8467 30 1 -0.3633 0.4422 -0.9277 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.3763 0.4589 1.7532 34 1 1.4025 3.1320 -0.9887 35 1 3.3967 2.2332 -2.1086 36 1 2.3648 0.8750 -2.6174 37 1 0.5884 1.2028 -4.2362 38 1 -0.2500 2.5464 -6.1217 39 1 -0.5934 4.7739 -7.0248 40 1 0.4386 6.1320 -6.5160 41 1 2.5977 6.4664 -7.6189 42 1 3.0398 4.9495 -6.7996 43 1 3.5998 3.9256 -8.9828 44 1 4.5453 5.4119 -8.7230 45 1 3.5887 5.3044 -11.0282 46 1 2.9523 6.6899 -10.1074 47 1 1.5663 3.9965 -10.4947 48 1 1.1131 5.5316 -11.2749 49 1 -0.3160 5.0665 -9.2946 50 1 0.6630 6.5338 -9.0575 51 1 2.2220 5.8007 -4.9023 52 1 3.0531 4.4608 -3.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564098473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:36 Heat of formation + Delta-G solvation = -10.694246 kcal Electronic energy + Delta-G solvation = -26231.959291 eV Core-core repulsion = 22808.127590 eV Total energy + Delta-G solvation = -3423.831701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79893 -39.54574 -38.25950 -35.59879 -34.38485 -32.97198 -32.01099 -31.66228 -31.36516 -28.61734 -27.03414 -25.48151 -25.02520 -24.08550 -23.47435 -23.30198 -21.56346 -21.17857 -20.58166 -19.04960 -17.26326 -17.00655 -16.74101 -16.35596 -16.10413 -15.75545 -15.61386 -15.48895 -15.29954 -15.18900 -14.93334 -14.41914 -14.29297 -14.22981 -14.09322 -13.87565 -13.67278 -13.27135 -13.17767 -12.97267 -12.88411 -12.70211 -12.61914 -12.16842 -12.09278 -11.98890 -11.95878 -11.79724 -11.74105 -11.59982 -11.54757 -11.28589 -11.20423 -10.65707 -10.35714 -9.77999 -9.61219 -9.23217 -9.11253 -8.58805 -6.29165 0.37518 0.53237 1.53908 1.61391 1.80113 2.56772 2.68433 3.17611 3.21379 3.63799 3.78533 3.86669 3.90954 3.99054 4.01459 4.08883 4.14104 4.21916 4.33321 4.39588 4.47479 4.51125 4.54801 4.57904 4.62170 4.67392 4.67971 4.69614 4.75444 4.80716 4.86518 4.95373 5.03892 5.04940 5.07855 5.10727 5.18551 5.20644 5.22904 5.30457 5.36261 5.46964 5.48371 5.54627 5.68254 5.69488 5.76283 5.88812 6.06964 6.09040 6.13540 6.20584 6.47692 6.59262 6.79228 7.49852 8.78524 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028077 B = 0.002218 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.018782 B =12620.274917 C =12776.727978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C 0.207 3.793 4 H -0.041 1.041 5 C -0.599 4.599 6 H 0.049 0.951 7 C -0.025 4.025 8 N -0.934 5.934 9 Si 1.110 2.890 10 H -0.287 1.287 11 H -0.273 1.273 12 H -0.272 1.272 13 N -0.665 5.665 14 C 0.101 3.899 15 C -0.084 4.084 16 C -0.109 4.109 17 C -0.100 4.100 18 C -0.082 4.082 19 C 0.100 3.900 20 N -0.542 5.542 21 C 0.051 3.949 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.115 4.115 25 C 0.054 3.946 26 C -0.112 4.112 27 C -0.126 4.126 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.258 0.742 34 H 0.332 0.668 35 H 0.016 0.984 36 H 0.068 0.932 37 H 0.122 0.878 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.046 0.954 41 H 0.033 0.967 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.034 0.966 51 H 0.131 0.869 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 10.343 -26.212 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C 0.098 3.902 4 H -0.024 1.024 5 C -0.637 4.637 6 H 0.067 0.933 7 C -0.224 4.224 8 N -0.571 5.571 9 Si 0.933 3.067 10 H -0.213 1.213 11 H -0.198 1.198 12 H -0.197 1.197 13 N -0.295 5.295 14 C -0.028 4.028 15 C -0.084 4.084 16 C -0.127 4.127 17 C -0.119 4.119 18 C -0.083 4.083 19 C -0.027 4.027 20 N -0.267 5.267 21 C -0.077 4.077 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.073 4.073 26 C -0.131 4.131 27 C -0.144 4.144 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.149 0.851 35 H 0.034 0.966 36 H 0.086 0.914 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.053 0.947 51 H 0.149 0.851 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.300 9.288 -24.826 26.853 hybrid contribution 1.151 1.085 -0.828 1.785 sum -3.149 10.373 -25.654 27.850 Atomic orbital electron populations 1.21304 0.94841 0.98998 1.01444 1.21389 0.97612 0.97263 0.97714 1.19115 0.90227 0.92367 0.88476 1.02385 1.22205 1.30422 1.18281 0.92833 0.93262 1.27047 0.94528 0.95821 1.04983 1.70918 1.23596 1.30465 1.32135 0.83010 0.75701 0.75935 0.72073 1.21283 1.19827 1.19704 1.60634 1.49317 1.15537 1.03973 1.20867 0.93342 0.98921 0.89679 1.19805 0.97879 0.94894 0.95869 1.21108 0.96472 1.00454 0.94678 1.21139 0.99976 0.93665 0.97075 1.19843 0.97203 0.94989 0.96232 1.20985 0.97064 0.96880 0.87748 1.61919 1.02447 1.59368 1.02960 1.22168 0.89326 0.97031 0.99171 1.21577 0.98247 1.01135 0.94497 1.21582 0.96568 1.00158 0.97425 1.21582 0.95087 1.01548 0.97021 1.22160 0.98721 0.96871 0.89585 1.21088 0.97426 0.99989 0.94579 1.21092 1.00813 0.93969 0.98549 0.94076 0.94270 0.92435 0.94849 0.95000 0.93186 0.85124 0.96618 0.91386 0.85985 0.84441 0.88814 0.93569 0.94857 0.91421 0.92275 0.91051 0.91099 0.92015 0.91899 0.90088 0.89980 0.94728 0.85088 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.70 9.52 71.98 0.69 -4.01 16 2 C -0.10 -4.84 5.49 30.60 0.17 -4.67 16 3 C 0.21 10.48 1.93 44.17 0.09 10.57 16 4 H -0.04 -2.33 7.08 -2.39 -0.02 -2.35 16 5 C -0.60 -33.01 7.24 25.60 0.19 -32.83 16 6 H 0.05 2.71 7.67 -2.91 -0.02 2.68 16 7 C -0.02 -1.40 5.18 84.66 0.44 -0.96 16 8 N -0.93 -56.57 13.04 21.45 0.28 -56.29 16 9 Si 1.11 50.18 29.91 68.60 2.05 52.23 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 13 N -0.66 -28.44 5.57 -499.47 -2.78 -31.22 16 14 C 0.10 3.74 5.66 85.56 0.48 4.22 16 15 C -0.08 -2.63 5.35 -19.87 -0.11 -2.73 16 16 C -0.11 -3.06 9.70 22.27 0.22 -2.84 16 17 C -0.10 -2.38 9.70 22.27 0.22 -2.16 16 18 C -0.08 -1.81 4.89 -19.87 -0.10 -1.91 16 19 C 0.10 1.72 5.12 85.56 0.44 2.16 16 20 N -0.54 -9.21 4.65 -900.93 -4.19 -13.39 16 21 C 0.05 0.87 5.16 86.33 0.45 1.31 16 22 C -0.12 -1.75 6.09 30.65 0.19 -1.56 16 23 C -0.12 -1.43 6.00 30.67 0.18 -1.24 16 24 C -0.11 -1.34 6.09 30.65 0.19 -1.15 16 25 C 0.05 0.71 5.46 86.33 0.47 1.18 16 26 C -0.11 -2.66 7.88 22.27 0.18 -2.48 16 27 C -0.13 -3.57 9.70 22.27 0.22 -3.36 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.83 7.12 -2.39 -0.02 1.82 16 30 H 0.06 2.35 7.71 -2.39 -0.02 2.34 16 31 H 0.03 1.47 7.64 -2.39 -0.02 1.45 16 32 H 0.03 1.68 6.37 -2.38 -0.02 1.67 16 33 H 0.26 15.87 6.03 -92.70 -0.56 15.31 16 34 H 0.33 14.43 8.17 -89.69 -0.73 13.70 16 35 H 0.02 0.61 7.89 -2.39 -0.02 0.59 16 36 H 0.07 2.51 7.58 -2.39 -0.02 2.49 16 37 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.09 1.39 7.93 -2.38 -0.02 1.38 16 40 H 0.05 0.75 8.07 -2.39 -0.02 0.73 16 41 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.07 1.35 5.75 -2.38 -0.01 1.34 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 44 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.08 0.95 8.02 -2.38 -0.02 0.93 16 50 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.13 2.58 7.95 -2.91 -0.02 2.56 16 52 H 0.11 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -62.32 399.08 0.29 -62.03 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.35 Total: 29.12 kcal Atomic # 6 Polarization: -47.05 SS G_CDS: 4.58 Total: -42.47 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -6.69 Total: -100.91 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.23 kcal Total: -62.32 0.29 -62.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564098473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.336 kcal (2) G-P(sol) polarization free energy of solvation -62.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds