Wall clock time and date at job start Tue Mar 31 2020 11:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47148 * 2 1 4 4 H 1.09000 * 109.47152 * 55.09262 * 3 2 1 5 5 C 1.50697 * 109.47066 * 175.09458 * 3 2 1 6 6 H 1.08002 * 119.99765 * 120.00069 * 5 3 2 7 7 C 1.37869 * 120.00267 * 299.99803 * 5 3 2 8 8 N 1.31518 * 119.99830 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00189 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47423 * 90.00083 * 9 7 5 11 11 H 1.48501 * 109.47132 * 210.00104 * 9 7 5 12 12 H 1.48501 * 109.46956 * 329.99875 * 9 7 5 13 13 N 1.46897 * 109.47065 * 295.09649 * 3 2 1 14 14 C 1.46902 * 111.00312 * 154.20355 * 13 3 2 15 15 C 1.50692 * 109.47445 * 185.22375 * 14 13 3 16 16 C 1.38243 * 119.99904 * 269.72888 * 15 14 13 17 17 C 1.38237 * 119.99720 * 179.76722 * 16 15 14 18 18 C 1.38234 * 120.00025 * 0.50648 * 17 16 15 19 19 C 1.50698 * 119.99815 * 179.72806 * 18 17 16 20 20 N 1.46903 * 109.47157 * 270.01746 * 19 18 17 21 21 C 1.46849 * 110.99948 * 294.21392 * 20 19 18 22 22 C 1.53039 * 109.52176 * 174.15588 * 21 20 19 23 23 C 1.53119 * 109.27826 * 59.18092 * 22 21 20 24 24 C 1.53122 * 109.15919 * 302.34308 * 23 22 21 25 25 C 1.46843 * 111.00393 * 170.00076 * 20 19 18 26 26 C 1.38235 * 120.00172 * 359.74659 * 18 17 16 27 27 C 1.38231 * 119.99954 * 359.97438 * 26 18 17 28 28 H 1.09007 * 109.46844 * 60.06839 * 1 2 3 29 29 H 1.09005 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47440 * 300.06971 * 1 2 3 31 31 H 1.08996 * 109.47397 * 239.99672 * 2 1 3 32 32 H 1.09003 * 109.46847 * 119.99777 * 2 1 3 33 33 H 0.97010 * 119.99558 * 180.02562 * 8 7 5 34 34 H 1.00899 * 110.99998 * 278.16049 * 13 3 2 35 35 H 1.09001 * 109.46784 * 65.22365 * 14 13 3 36 36 H 1.09000 * 109.47420 * 305.23014 * 14 13 3 37 37 H 1.08004 * 119.99942 * 359.97438 * 16 15 14 38 38 H 1.07997 * 119.99961 * 180.23154 * 17 16 15 39 39 H 1.08997 * 109.47639 * 30.02052 * 19 18 17 40 40 H 1.09008 * 109.46999 * 150.02383 * 19 18 17 41 41 H 1.09001 * 109.46371 * 294.17406 * 21 20 19 42 42 H 1.08999 * 109.46328 * 54.14524 * 21 20 19 43 43 H 1.08996 * 109.50501 * 299.24172 * 22 21 20 44 44 H 1.09003 * 109.50247 * 179.11381 * 22 21 20 45 45 H 1.08996 * 109.52824 * 182.43994 * 23 22 21 46 46 H 1.09000 * 109.52703 * 62.24340 * 23 22 21 47 47 H 1.08996 * 109.50761 * 297.71263 * 24 23 22 48 48 H 1.09005 * 109.50217 * 177.59032 * 24 23 22 49 49 H 1.09001 * 109.46080 * 305.86021 * 25 20 19 50 50 H 1.09000 * 109.45950 * 65.82553 * 25 20 19 51 51 H 1.07997 * 120.00261 * 179.97438 * 26 18 17 52 52 H 1.07998 * 120.00493 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9811 0.8428 5 6 3.5421 1.4442 0.1215 6 1 4.1461 1.8892 -0.6554 7 6 4.1452 0.8777 1.2243 8 7 3.4096 0.3354 2.1701 9 14 6.0071 0.8805 1.3752 10 1 6.4449 2.1130 2.0783 11 1 6.4429 -0.3110 2.1470 12 1 6.6135 0.8416 0.0203 13 7 1.6494 2.0999 -1.2542 14 6 1.5525 3.5551 -1.0779 15 6 1.0275 4.1807 -2.3444 16 6 1.9075 4.5963 -3.3262 17 6 1.4257 5.1658 -4.4900 18 6 0.0646 5.3294 -4.6675 19 6 -0.4603 5.9558 -5.9336 20 7 -0.5568 7.4109 -5.7564 21 6 -1.5669 7.7522 -4.7467 22 6 -1.5382 9.2595 -4.4836 23 6 -1.8226 10.0062 -5.7898 24 6 -0.7854 9.5964 -6.8390 25 6 -0.8360 8.0793 -7.0338 26 6 -0.8151 4.9186 -3.6835 27 6 -0.3336 4.3438 -2.5221 28 1 -0.3633 0.5128 -0.8907 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5149 0.8893 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 -0.0628 2.9462 34 1 2.2895 1.8677 -1.9988 35 1 2.5393 3.9605 -0.8543 36 1 0.8735 3.7770 -0.2545 37 1 2.9712 4.4730 -3.1855 38 1 2.1129 5.4871 -5.2587 39 1 0.2186 5.7344 -6.7571 40 1 -1.4473 5.5508 -6.1573 41 1 -2.5542 7.4656 -5.1091 42 1 -1.3506 7.2180 -3.8215 43 1 -0.5555 9.5447 -4.1081 44 1 -2.2987 9.5148 -3.7456 45 1 -1.7603 11.0805 -5.6164 46 1 -2.8209 9.7510 -6.1454 47 1 0.2091 9.8868 -6.5006 48 1 -1.0082 10.0922 -7.7839 49 1 -0.0889 7.7825 -7.7699 50 1 -1.8266 7.7911 -7.3855 51 1 -1.8784 5.0467 -3.8219 52 1 -1.0208 4.0232 -1.7531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564098474.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:40 Heat of formation + Delta-G solvation = 4.960088 kcal Electronic energy + Delta-G solvation = -26180.522678 eV Core-core repulsion = 22757.369800 eV Total energy + Delta-G solvation = -3423.152878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.79309 -38.56563 -36.18217 -34.36513 -32.71801 -31.50029 -31.12753 -30.61474 -30.07967 -27.31054 -25.88939 -24.08060 -23.35700 -22.76127 -22.38983 -21.95662 -20.27347 -19.91939 -19.45685 -16.73425 -16.39670 -15.94690 -15.52252 -15.12674 -14.85217 -14.72650 -14.59151 -14.22667 -13.96802 -13.66681 -13.49654 -13.47570 -13.14817 -12.92544 -12.66941 -12.39991 -12.17521 -12.08226 -11.81000 -11.59346 -11.46285 -11.24892 -11.17103 -11.01169 -10.91139 -10.78388 -10.71646 -10.65514 -10.57512 -10.44220 -10.12595 -9.58446 -9.51191 -9.06425 -8.64611 -8.54660 -8.38090 -8.24916 -7.23870 -5.99855 -4.12950 1.56467 1.70193 3.26557 3.33973 3.36687 3.64790 4.16072 4.39307 4.53584 4.56919 4.65448 4.79931 4.95078 5.00899 5.15675 5.21454 5.24417 5.25273 5.27533 5.32823 5.35488 5.41741 5.49796 5.60905 5.66048 5.68848 5.72512 5.81854 5.85835 5.87713 5.94149 6.09525 6.10821 6.24066 6.37707 6.43692 6.51058 6.54328 6.68119 6.72976 6.76473 6.88153 6.93935 7.04156 7.15545 7.19261 7.29041 7.44579 7.59459 7.77771 8.09298 8.14632 8.32913 8.65721 8.99800 9.54735 11.00162 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.002340 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.836600 B =11964.800710 C =12492.974225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.100 3.900 15 C -0.059 4.059 16 C -0.116 4.116 17 C -0.099 4.099 18 C -0.092 4.092 19 C 0.099 3.901 20 N -0.532 5.532 21 C 0.051 3.949 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.117 4.117 25 C 0.055 3.945 26 C -0.118 4.118 27 C -0.102 4.102 28 H 0.048 0.952 29 H 0.024 0.976 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.090 0.910 33 H 0.261 0.739 34 H 0.328 0.672 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.029 0.971 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.030 0.970 51 H 0.112 0.888 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.525 15.569 -16.234 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.311 5.311 14 C -0.029 4.029 15 C -0.060 4.060 16 C -0.135 4.135 17 C -0.118 4.118 18 C -0.093 4.093 19 C -0.028 4.028 20 N -0.257 5.257 21 C -0.077 4.077 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.073 4.073 26 C -0.136 4.136 27 C -0.121 4.121 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.048 0.952 51 H 0.130 0.870 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.747 15.529 -15.778 24.608 hybrid contribution 1.264 -0.132 -0.038 1.272 sum -9.482 15.397 -15.816 24.023 Atomic orbital electron populations 1.21703 0.99028 0.98342 1.00386 1.21489 0.92094 0.99177 1.01645 1.19165 0.92816 0.91252 0.86072 0.95027 1.21862 0.92749 1.38222 1.05611 0.92873 1.24933 0.97936 0.94965 0.95709 1.69882 1.34827 1.38185 1.09410 0.86656 0.86061 0.77537 0.78098 1.20757 1.21154 1.20002 1.60934 1.55171 1.04961 1.10058 1.20775 0.99042 0.90363 0.92763 1.20137 0.93348 0.96111 0.96382 1.21098 0.99661 0.99061 0.93665 1.20860 0.94487 0.99000 0.97432 1.19508 0.93733 1.00306 0.95771 1.20971 0.99534 0.86667 0.95642 1.61921 1.48025 1.07554 1.08178 1.22189 0.92425 0.96486 0.96575 1.21586 1.02382 0.94424 0.97120 1.21585 0.98718 0.99872 0.95746 1.21581 1.00235 0.94831 0.98788 1.22085 0.99395 0.94646 0.91129 1.20927 0.98657 0.99920 0.94114 1.20982 0.95174 0.98572 0.97350 0.93282 0.95696 0.94532 0.95127 0.89160 0.92879 0.85557 0.94530 0.91351 0.86344 0.86627 0.90173 0.94321 0.95294 0.89780 0.91028 0.91663 0.91936 0.92478 0.91025 0.91739 0.90826 0.95166 0.87046 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.80 37.16 0.36 -2.48 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.21 5.27 1.98 -68.87 -0.14 5.13 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.55 -14.58 8.47 -34.44 -0.29 -14.87 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.01 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.91 11.29 55.43 0.63 -24.28 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 N -0.68 -14.25 5.66 -109.23 -0.62 -14.87 16 14 C 0.10 1.88 5.64 -4.98 -0.03 1.85 16 15 C -0.06 -0.95 5.44 -104.62 -0.57 -1.52 16 16 C -0.12 -1.73 9.70 -39.58 -0.38 -2.12 16 17 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 18 C -0.09 -1.14 4.89 -104.63 -0.51 -1.65 16 19 C 0.10 1.01 5.12 -4.98 -0.03 0.98 16 20 N -0.53 -5.29 4.65 -236.11 -1.10 -6.39 16 21 C 0.05 0.49 5.16 -3.83 -0.02 0.47 16 22 C -0.12 -0.99 6.09 -26.65 -0.16 -1.15 16 23 C -0.12 -0.88 6.00 -26.61 -0.16 -1.04 16 24 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 25 C 0.06 0.45 5.46 -3.84 -0.02 0.43 16 26 C -0.12 -1.50 7.88 -39.59 -0.31 -1.81 16 27 C -0.10 -1.50 9.70 -39.58 -0.38 -1.88 16 28 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 34 H 0.33 6.90 8.45 -39.29 -0.33 6.57 16 35 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 36 H 0.07 1.30 7.87 -51.93 -0.41 0.89 16 37 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 40 H 0.04 0.38 8.07 -51.92 -0.42 -0.04 16 41 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.91 5.75 -51.93 -0.30 0.61 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.55 8.02 -51.93 -0.42 0.14 16 50 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.11 1.22 7.95 -52.49 -0.42 0.80 16 52 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 403.57 15.07 6.08 6.08 Total: -1.00 -27.57 403.57 -13.15 -40.72 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -9.69 Total: 6.00 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -3.43 Total: -23.32 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -1.09 Total: -45.54 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -27.57 -13.15 -40.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564098474.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.676 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds