Wall clock time and date at job start Tue Mar 31 2020 11:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47070 * 2 1 4 4 H 1.09001 * 109.47410 * 184.46219 * 3 2 1 5 5 C 1.50701 * 109.47393 * 304.45928 * 3 2 1 6 6 H 1.07998 * 119.99991 * 115.14596 * 5 3 2 7 7 C 1.37879 * 119.99991 * 295.14989 * 5 3 2 8 8 N 1.31511 * 120.00126 * 352.97123 * 7 5 3 9 9 Si 1.86800 * 119.99925 * 172.96798 * 7 5 3 10 10 H 1.48502 * 109.47100 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47351 * 300.00077 * 9 7 5 12 12 H 1.48497 * 109.47212 * 60.00352 * 9 7 5 13 13 N 1.46897 * 109.47301 * 64.45943 * 3 2 1 14 14 C 1.46899 * 110.99929 * 85.30098 * 13 3 2 15 15 C 1.50699 * 109.47214 * 185.03781 * 14 13 3 16 16 C 1.38260 * 119.99795 * 269.72333 * 15 14 13 17 17 C 1.38221 * 119.99972 * 179.74014 * 16 15 14 18 18 C 1.38253 * 119.99799 * 0.55732 * 17 16 15 19 19 C 1.38220 * 119.99882 * 359.69919 * 18 17 16 20 20 C 1.50704 * 119.99551 * 180.02562 * 19 18 17 21 21 N 1.46899 * 109.46917 * 270.01728 * 20 19 18 22 22 C 1.46839 * 111.00374 * 294.21292 * 21 20 19 23 23 C 1.53041 * 109.52304 * 174.16232 * 22 21 20 24 24 C 1.53119 * 109.27553 * 59.18088 * 23 22 21 25 25 C 1.53121 * 109.16039 * 302.34198 * 24 23 22 26 26 C 1.46851 * 110.99732 * 170.00007 * 21 20 19 27 27 C 1.38208 * 120.00287 * 89.99927 * 15 14 13 28 28 H 1.09001 * 109.46937 * 185.53911 * 1 2 3 29 29 H 1.08993 * 109.46731 * 305.53766 * 1 2 3 30 30 H 1.08997 * 109.47208 * 65.53992 * 1 2 3 31 31 H 1.09009 * 109.47037 * 240.00466 * 2 1 3 32 32 H 1.08992 * 109.47619 * 120.00340 * 2 1 3 33 33 H 0.96996 * 120.00069 * 356.30728 * 8 7 5 34 34 H 1.00905 * 111.00328 * 209.25517 * 13 3 2 35 35 H 1.09003 * 109.47374 * 305.03471 * 14 13 3 36 36 H 1.08998 * 109.47277 * 65.03674 * 14 13 3 37 37 H 1.07998 * 120.00074 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.99708 * 180.27731 * 17 16 15 39 39 H 1.07999 * 120.00257 * 179.71918 * 18 17 16 40 40 H 1.08994 * 109.47577 * 30.02425 * 20 19 18 41 41 H 1.09000 * 109.46523 * 150.02120 * 20 19 18 42 42 H 1.08998 * 109.46212 * 294.17688 * 22 21 20 43 43 H 1.08998 * 109.46298 * 54.14520 * 22 21 20 44 44 H 1.08998 * 109.50001 * 299.23426 * 23 22 21 45 45 H 1.08997 * 109.50277 * 179.12066 * 23 22 21 46 46 H 1.09008 * 109.52122 * 182.44247 * 24 23 22 47 47 H 1.08997 * 109.52709 * 62.24995 * 24 23 22 48 48 H 1.08998 * 109.50432 * 297.71730 * 25 24 23 49 49 H 1.09002 * 109.50199 * 177.59885 * 25 24 23 50 50 H 1.09004 * 109.46351 * 305.86420 * 26 21 20 51 51 H 1.09006 * 109.45745 * 65.82631 * 26 21 20 52 52 H 1.08000 * 120.00291 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1270 1.4436 -0.0800 5 6 1.4495 2.1841 -1.1715 6 1 0.7753 3.0108 -1.0030 7 6 1.7699 1.8071 -2.4585 8 7 2.6939 0.8945 -2.6656 9 14 0.8914 2.5926 -3.9078 10 1 1.4140 2.0184 -5.1737 11 1 -0.5657 2.3248 -3.8079 12 1 1.1274 4.0587 -3.8943 13 7 1.6402 2.1032 1.2496 14 6 2.6092 1.8344 2.3205 15 6 2.1050 2.4223 3.6133 16 6 2.4390 3.7184 3.9600 17 6 1.9722 4.2594 5.1431 18 6 1.1808 3.5007 5.9854 19 6 0.8513 2.2032 5.6413 20 6 -0.0118 1.3763 6.5592 21 7 0.8405 0.6478 7.5083 22 6 1.6723 -0.3439 6.8148 23 6 2.6471 -0.9789 7.8091 24 6 1.8553 -1.6478 8.9362 25 6 0.9613 -0.6035 9.6107 26 6 0.0355 0.0206 8.5642 27 6 1.3135 1.6639 4.4551 28 1 -0.3633 -1.0229 0.0992 29 1 -0.3632 0.5973 0.8362 30 1 -0.3633 0.4255 -0.9354 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.1875 0.5254 -1.9167 34 1 1.5198 3.0955 1.1116 35 1 2.7344 0.7577 2.4355 36 1 3.5676 2.2864 2.0652 37 1 3.0608 4.3096 3.3041 38 1 2.2294 5.2734 5.4117 39 1 0.8198 3.9218 6.9120 40 1 -0.6897 2.0304 7.1075 41 1 -0.5905 0.6647 5.9703 42 1 1.0345 -1.1174 6.3871 43 1 2.2331 0.1455 6.0185 44 1 3.2944 -0.2079 8.2269 45 1 3.2536 -1.7261 7.2974 46 1 2.5462 -2.0640 9.6694 47 1 1.2369 -2.4449 8.5236 48 1 1.5822 0.1734 10.0569 49 1 0.3635 -1.0826 10.3861 50 1 -0.5926 0.7747 9.0385 51 1 -0.5947 -0.7547 8.1282 52 1 1.0566 0.6499 4.1867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565168032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:47 Heat of formation + Delta-G solvation = 4.355256 kcal Electronic energy + Delta-G solvation = -26712.063523 eV Core-core repulsion = 23288.884418 eV Total energy + Delta-G solvation = -3423.179105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.83808 -38.59245 -36.50849 -34.36705 -33.14545 -31.26789 -31.23226 -30.60793 -29.95013 -26.51893 -26.12748 -24.05448 -23.43616 -23.24084 -23.12342 -21.76782 -20.15251 -19.83355 -19.24619 -17.06329 -16.34108 -16.26284 -15.58911 -15.28323 -14.83322 -14.63192 -14.30174 -14.12856 -14.03039 -13.74206 -13.63978 -13.50444 -13.41263 -12.86019 -12.70894 -12.47275 -12.19363 -12.14566 -11.99546 -11.63127 -11.55717 -11.43285 -11.14795 -11.05467 -10.90342 -10.78820 -10.66476 -10.62307 -10.45442 -10.13092 -10.09376 -9.90286 -9.68962 -8.71194 -8.62106 -8.43742 -8.38539 -8.30649 -7.37922 -6.36009 -4.06737 1.49515 1.60093 3.42880 3.45259 3.63099 3.63564 4.10019 4.51752 4.56205 4.59422 4.68700 4.79666 4.91074 5.03552 5.07416 5.18974 5.25215 5.29623 5.30903 5.35817 5.39332 5.42578 5.47689 5.54710 5.65117 5.66091 5.69973 5.72434 5.75555 5.88183 5.90208 5.97647 6.06933 6.13592 6.24875 6.27416 6.32358 6.45836 6.60994 6.63690 6.70686 6.87590 6.88785 6.95622 6.96966 7.05720 7.19689 7.28600 7.46898 7.55651 7.86989 8.09789 8.50460 8.57809 8.86352 9.63378 11.00808 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.002719 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.624082 B =10295.731295 C =10963.713462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.104 4.104 3 C 0.204 3.796 4 H -0.008 1.008 5 C -0.593 4.593 6 H 0.053 0.947 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 1.064 2.936 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.673 5.673 14 C 0.094 3.906 15 C -0.064 4.064 16 C -0.115 4.115 17 C -0.122 4.122 18 C -0.107 4.107 19 C -0.083 4.083 20 C 0.097 3.903 21 N -0.532 5.532 22 C 0.050 3.950 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.116 4.116 26 C 0.055 3.945 27 C -0.093 4.093 28 H 0.015 0.985 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.018 0.982 33 H 0.270 0.730 34 H 0.335 0.665 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.032 0.968 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.031 0.969 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 -0.673 23.287 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.143 4.143 3 C 0.096 3.904 4 H 0.009 0.991 5 C -0.632 4.632 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.546 5.546 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.304 5.304 14 C -0.035 4.035 15 C -0.064 4.064 16 C -0.134 4.134 17 C -0.140 4.140 18 C -0.126 4.126 19 C -0.083 4.083 20 C -0.030 4.030 21 N -0.257 5.257 22 C -0.078 4.078 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.153 4.153 26 C -0.073 4.073 27 C -0.112 4.112 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.091 0.909 51 H 0.050 0.950 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.847 -0.907 22.025 22.226 hybrid contribution 0.333 0.015 0.971 1.027 sum -2.514 -0.892 22.996 23.150 Atomic orbital electron populations 1.21414 0.96492 0.97411 1.02217 1.21473 0.96367 0.98250 0.98219 1.19244 0.93086 0.91744 0.86323 0.99087 1.21937 1.31060 1.18364 0.91816 0.92869 1.25687 0.96376 0.95926 1.00069 1.70790 1.21234 1.27030 1.35571 0.83619 0.75785 0.75513 0.75860 1.20876 1.21367 1.21568 1.60598 1.46151 1.16240 1.07369 1.20898 0.93587 0.99795 0.89226 1.19947 0.96812 0.93934 0.95722 1.21074 1.00356 0.95082 0.96848 1.21035 0.98609 0.99525 0.94869 1.20853 0.98790 0.93851 0.99089 1.19590 0.99285 0.94568 0.94857 1.20993 0.93310 0.95990 0.92754 1.61940 1.23469 1.27538 1.12713 1.22199 0.95712 0.93257 0.96645 1.21578 0.97777 0.99664 0.96409 1.21590 0.98611 0.97794 0.97970 1.21572 0.98138 0.98417 0.97215 1.22089 0.94833 0.97413 0.92975 1.20871 0.97209 0.99714 0.93394 0.96587 0.93043 0.92464 0.92402 0.96295 0.91856 0.84751 0.91214 0.95502 0.86510 0.86498 0.86599 0.90116 0.93960 0.95026 0.89862 0.91154 0.91595 0.91945 0.92372 0.91117 0.91731 0.90855 0.95026 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.43 37.16 0.35 -2.28 16 2 C -0.10 -2.46 5.51 -26.73 -0.15 -2.61 16 3 C 0.20 5.00 1.93 -68.87 -0.13 4.86 16 4 H -0.01 -0.22 7.22 -51.93 -0.37 -0.60 16 5 C -0.59 -16.01 7.13 -34.44 -0.25 -16.26 16 6 H 0.05 1.45 7.67 -52.49 -0.40 1.05 16 7 C 0.02 0.67 5.26 -17.82 -0.09 0.58 16 8 N -0.91 -26.76 12.94 55.43 0.72 -26.04 16 9 Si 1.06 24.86 29.91 -169.99 -5.08 19.78 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.67 -14.09 5.60 -109.23 -0.61 -14.71 16 14 C 0.09 1.69 5.58 -4.98 -0.03 1.66 16 15 C -0.06 -1.00 5.44 -104.63 -0.57 -1.56 16 16 C -0.11 -1.64 9.70 -39.58 -0.38 -2.03 16 17 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 18 C -0.11 -1.32 9.70 -39.58 -0.38 -1.70 16 19 C -0.08 -1.06 4.89 -104.62 -0.51 -1.57 16 20 C 0.10 1.06 5.12 -4.97 -0.03 1.03 16 21 N -0.53 -5.58 4.65 -236.12 -1.10 -6.68 16 22 C 0.05 0.53 5.16 -3.84 -0.02 0.51 16 23 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 24 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16 25 C -0.12 -0.89 6.09 -26.65 -0.16 -1.05 16 26 C 0.05 0.48 5.46 -3.84 -0.02 0.45 16 27 C -0.09 -1.35 7.53 -39.59 -0.30 -1.65 16 28 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 1.12 7.59 -51.93 -0.39 0.73 16 30 H 0.06 1.38 7.31 -51.93 -0.38 1.00 16 31 H 0.06 1.49 6.35 -51.92 -0.33 1.16 16 32 H 0.02 0.40 7.33 -51.93 -0.38 0.02 16 33 H 0.27 7.93 6.03 -40.82 -0.25 7.69 16 34 H 0.33 7.11 8.29 -39.29 -0.33 6.78 16 35 H 0.07 1.26 7.24 -51.93 -0.38 0.89 16 36 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 41 H 0.04 0.48 8.07 -51.93 -0.42 0.06 16 42 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 1.01 5.75 -51.93 -0.30 0.71 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.57 8.02 -51.93 -0.42 0.16 16 51 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 52 H 0.12 1.71 7.95 -52.49 -0.42 1.29 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -28.70 398.78 -12.92 -41.62 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -9.46 Total: 5.94 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -3.39 Total: -25.91 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.99 Total: -47.43 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.70 -12.92 -41.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565168032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.974 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds