Wall clock time and date at job start Tue Mar 31 2020 11:15:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52994 * 109.47070 * 2 1
4 4 H 1.09001 * 109.47410 * 184.46219 * 3 2 1
5 5 C 1.50701 * 109.47393 * 304.45928 * 3 2 1
6 6 H 1.07998 * 119.99991 * 115.14596 * 5 3 2
7 7 C 1.37879 * 119.99991 * 295.14989 * 5 3 2
8 8 N 1.31511 * 120.00126 * 352.97123 * 7 5 3
9 9 Si 1.86800 * 119.99925 * 172.96798 * 7 5 3
10 10 H 1.48502 * 109.47100 * 180.02562 * 9 7 5
11 11 H 1.48495 * 109.47351 * 300.00077 * 9 7 5
12 12 H 1.48497 * 109.47212 * 60.00352 * 9 7 5
13 13 N 1.46897 * 109.47301 * 64.45943 * 3 2 1
14 14 C 1.46899 * 110.99929 * 85.30098 * 13 3 2
15 15 C 1.50699 * 109.47214 * 185.03781 * 14 13 3
16 16 C 1.38260 * 119.99795 * 269.72333 * 15 14 13
17 17 C 1.38221 * 119.99972 * 179.74014 * 16 15 14
18 18 C 1.38253 * 119.99799 * 0.55732 * 17 16 15
19 19 C 1.38220 * 119.99882 * 359.69919 * 18 17 16
20 20 C 1.50704 * 119.99551 * 180.02562 * 19 18 17
21 21 N 1.46899 * 109.46917 * 270.01728 * 20 19 18
22 22 C 1.46839 * 111.00374 * 294.21292 * 21 20 19
23 23 C 1.53041 * 109.52304 * 174.16232 * 22 21 20
24 24 C 1.53119 * 109.27553 * 59.18088 * 23 22 21
25 25 C 1.53121 * 109.16039 * 302.34198 * 24 23 22
26 26 C 1.46851 * 110.99732 * 170.00007 * 21 20 19
27 27 C 1.38208 * 120.00287 * 89.99927 * 15 14 13
28 28 H 1.09001 * 109.46937 * 185.53911 * 1 2 3
29 29 H 1.08993 * 109.46731 * 305.53766 * 1 2 3
30 30 H 1.08997 * 109.47208 * 65.53992 * 1 2 3
31 31 H 1.09009 * 109.47037 * 240.00466 * 2 1 3
32 32 H 1.08992 * 109.47619 * 120.00340 * 2 1 3
33 33 H 0.96996 * 120.00069 * 356.30728 * 8 7 5
34 34 H 1.00905 * 111.00328 * 209.25517 * 13 3 2
35 35 H 1.09003 * 109.47374 * 305.03471 * 14 13 3
36 36 H 1.08998 * 109.47277 * 65.03674 * 14 13 3
37 37 H 1.07998 * 120.00074 * 0.02562 * 16 15 14
38 38 H 1.08000 * 119.99708 * 180.27731 * 17 16 15
39 39 H 1.07999 * 120.00257 * 179.71918 * 18 17 16
40 40 H 1.08994 * 109.47577 * 30.02425 * 20 19 18
41 41 H 1.09000 * 109.46523 * 150.02120 * 20 19 18
42 42 H 1.08998 * 109.46212 * 294.17688 * 22 21 20
43 43 H 1.08998 * 109.46298 * 54.14520 * 22 21 20
44 44 H 1.08998 * 109.50001 * 299.23426 * 23 22 21
45 45 H 1.08997 * 109.50277 * 179.12066 * 23 22 21
46 46 H 1.09008 * 109.52122 * 182.44247 * 24 23 22
47 47 H 1.08997 * 109.52709 * 62.24995 * 24 23 22
48 48 H 1.08998 * 109.50432 * 297.71730 * 25 24 23
49 49 H 1.09002 * 109.50199 * 177.59885 * 25 24 23
50 50 H 1.09004 * 109.46351 * 305.86420 * 26 21 20
51 51 H 1.09006 * 109.45745 * 65.82631 * 26 21 20
52 52 H 1.08000 * 120.00291 * 0.02562 * 27 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 3.1270 1.4436 -0.0800
5 6 1.4495 2.1841 -1.1715
6 1 0.7753 3.0108 -1.0030
7 6 1.7699 1.8071 -2.4585
8 7 2.6939 0.8945 -2.6656
9 14 0.8914 2.5926 -3.9078
10 1 1.4140 2.0184 -5.1737
11 1 -0.5657 2.3248 -3.8079
12 1 1.1274 4.0587 -3.8943
13 7 1.6402 2.1032 1.2496
14 6 2.6092 1.8344 2.3205
15 6 2.1050 2.4223 3.6133
16 6 2.4390 3.7184 3.9600
17 6 1.9722 4.2594 5.1431
18 6 1.1808 3.5007 5.9854
19 6 0.8513 2.2032 5.6413
20 6 -0.0118 1.3763 6.5592
21 7 0.8405 0.6478 7.5083
22 6 1.6723 -0.3439 6.8148
23 6 2.6471 -0.9789 7.8091
24 6 1.8553 -1.6478 8.9362
25 6 0.9613 -0.6035 9.6107
26 6 0.0355 0.0206 8.5642
27 6 1.3135 1.6639 4.4551
28 1 -0.3633 -1.0229 0.0992
29 1 -0.3632 0.5973 0.8362
30 1 -0.3633 0.4255 -0.9354
31 1 1.8934 -0.5138 -0.8901
32 1 1.8934 -0.5138 0.8899
33 1 3.1875 0.5254 -1.9167
34 1 1.5198 3.0955 1.1116
35 1 2.7344 0.7577 2.4355
36 1 3.5676 2.2864 2.0652
37 1 3.0608 4.3096 3.3041
38 1 2.2294 5.2734 5.4117
39 1 0.8198 3.9218 6.9120
40 1 -0.6897 2.0304 7.1075
41 1 -0.5905 0.6647 5.9703
42 1 1.0345 -1.1174 6.3871
43 1 2.2331 0.1455 6.0185
44 1 3.2944 -0.2079 8.2269
45 1 3.2536 -1.7261 7.2974
46 1 2.5462 -2.0640 9.6694
47 1 1.2369 -2.4449 8.5236
48 1 1.5822 0.1734 10.0569
49 1 0.3635 -1.0826 10.3861
50 1 -0.5926 0.7747 9.0385
51 1 -0.5947 -0.7547 8.1282
52 1 1.0566 0.6499 4.1867
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000565168032.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:15:47
Heat of formation + Delta-G solvation = 4.355256 kcal
Electronic energy + Delta-G solvation = -26712.063523 eV
Core-core repulsion = 23288.884418 eV
Total energy + Delta-G solvation = -3423.179105 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-39.83808 -38.59245 -36.50849 -34.36705 -33.14545 -31.26789 -31.23226 -30.60793
-29.95013 -26.51893 -26.12748 -24.05448 -23.43616 -23.24084 -23.12342 -21.76782
-20.15251 -19.83355 -19.24619 -17.06329 -16.34108 -16.26284 -15.58911 -15.28323
-14.83322 -14.63192 -14.30174 -14.12856 -14.03039 -13.74206 -13.63978 -13.50444
-13.41263 -12.86019 -12.70894 -12.47275 -12.19363 -12.14566 -11.99546 -11.63127
-11.55717 -11.43285 -11.14795 -11.05467 -10.90342 -10.78820 -10.66476 -10.62307
-10.45442 -10.13092 -10.09376 -9.90286 -9.68962 -8.71194 -8.62106 -8.43742
-8.38539 -8.30649 -7.37922 -6.36009 -4.06737 1.49515 1.60093 3.42880
3.45259 3.63099 3.63564 4.10019 4.51752 4.56205 4.59422 4.68700
4.79666 4.91074 5.03552 5.07416 5.18974 5.25215 5.29623 5.30903
5.35817 5.39332 5.42578 5.47689 5.54710 5.65117 5.66091 5.69973
5.72434 5.75555 5.88183 5.90208 5.97647 6.06933 6.13592 6.24875
6.27416 6.32358 6.45836 6.60994 6.63690 6.70686 6.87590 6.88785
6.95622 6.96966 7.05720 7.19689 7.28600 7.46898 7.55651 7.86989
8.09789 8.50460 8.57809 8.86352 9.63378 11.00808
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.019337 B = 0.002719 C = 0.002553
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1447.624082 B =10295.731295 C =10963.713462
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.104 4.104
3 C 0.204 3.796
4 H -0.008 1.008
5 C -0.593 4.593
6 H 0.053 0.947
7 C 0.024 3.976
8 N -0.910 5.910
9 Si 1.064 2.936
10 H -0.283 1.283
11 H -0.287 1.287
12 H -0.289 1.289
13 N -0.673 5.673
14 C 0.094 3.906
15 C -0.064 4.064
16 C -0.115 4.115
17 C -0.122 4.122
18 C -0.107 4.107
19 C -0.083 4.083
20 C 0.097 3.903
21 N -0.532 5.532
22 C 0.050 3.950
23 C -0.116 4.116
24 C -0.122 4.122
25 C -0.116 4.116
26 C 0.055 3.945
27 C -0.093 4.093
28 H 0.015 0.985
29 H 0.050 0.950
30 H 0.056 0.944
31 H 0.057 0.943
32 H 0.018 0.982
33 H 0.270 0.730
34 H 0.335 0.665
35 H 0.069 0.931
36 H 0.027 0.973
37 H 0.117 0.883
38 H 0.117 0.883
39 H 0.116 0.884
40 H 0.080 0.920
41 H 0.042 0.958
42 H 0.032 0.968
43 H 0.083 0.917
44 H 0.070 0.930
45 H 0.065 0.935
46 H 0.062 0.938
47 H 0.058 0.942
48 H 0.070 0.930
49 H 0.064 0.936
50 H 0.073 0.927
51 H 0.031 0.969
52 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.611 -0.673 23.287 23.442
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.143 4.143
3 C 0.096 3.904
4 H 0.009 0.991
5 C -0.632 4.632
6 H 0.071 0.929
7 C -0.181 4.181
8 N -0.546 5.546
9 Si 0.892 3.108
10 H -0.209 1.209
11 H -0.214 1.214
12 H -0.216 1.216
13 N -0.304 5.304
14 C -0.035 4.035
15 C -0.064 4.064
16 C -0.134 4.134
17 C -0.140 4.140
18 C -0.126 4.126
19 C -0.083 4.083
20 C -0.030 4.030
21 N -0.257 5.257
22 C -0.078 4.078
23 C -0.154 4.154
24 C -0.160 4.160
25 C -0.153 4.153
26 C -0.073 4.073
27 C -0.112 4.112
28 H 0.034 0.966
29 H 0.070 0.930
30 H 0.075 0.925
31 H 0.076 0.924
32 H 0.037 0.963
33 H 0.081 0.919
34 H 0.152 0.848
35 H 0.088 0.912
36 H 0.045 0.955
37 H 0.135 0.865
38 H 0.135 0.865
39 H 0.134 0.866
40 H 0.099 0.901
41 H 0.060 0.940
42 H 0.050 0.950
43 H 0.101 0.899
44 H 0.088 0.912
45 H 0.084 0.916
46 H 0.081 0.919
47 H 0.076 0.924
48 H 0.089 0.911
49 H 0.083 0.917
50 H 0.091 0.909
51 H 0.050 0.950
52 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -2.847 -0.907 22.025 22.226
hybrid contribution 0.333 0.015 0.971 1.027
sum -2.514 -0.892 22.996 23.150
Atomic orbital electron populations
1.21414 0.96492 0.97411 1.02217 1.21473 0.96367 0.98250 0.98219
1.19244 0.93086 0.91744 0.86323 0.99087 1.21937 1.31060 1.18364
0.91816 0.92869 1.25687 0.96376 0.95926 1.00069 1.70790 1.21234
1.27030 1.35571 0.83619 0.75785 0.75513 0.75860 1.20876 1.21367
1.21568 1.60598 1.46151 1.16240 1.07369 1.20898 0.93587 0.99795
0.89226 1.19947 0.96812 0.93934 0.95722 1.21074 1.00356 0.95082
0.96848 1.21035 0.98609 0.99525 0.94869 1.20853 0.98790 0.93851
0.99089 1.19590 0.99285 0.94568 0.94857 1.20993 0.93310 0.95990
0.92754 1.61940 1.23469 1.27538 1.12713 1.22199 0.95712 0.93257
0.96645 1.21578 0.97777 0.99664 0.96409 1.21590 0.98611 0.97794
0.97970 1.21572 0.98138 0.98417 0.97215 1.22089 0.94833 0.97413
0.92975 1.20871 0.97209 0.99714 0.93394 0.96587 0.93043 0.92464
0.92402 0.96295 0.91856 0.84751 0.91214 0.95502 0.86510 0.86498
0.86599 0.90116 0.93960 0.95026 0.89862 0.91154 0.91595 0.91945
0.92372 0.91117 0.91731 0.90855 0.95026 0.86559
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.63 9.43 37.16 0.35 -2.28 16
2 C -0.10 -2.46 5.51 -26.73 -0.15 -2.61 16
3 C 0.20 5.00 1.93 -68.87 -0.13 4.86 16
4 H -0.01 -0.22 7.22 -51.93 -0.37 -0.60 16
5 C -0.59 -16.01 7.13 -34.44 -0.25 -16.26 16
6 H 0.05 1.45 7.67 -52.49 -0.40 1.05 16
7 C 0.02 0.67 5.26 -17.82 -0.09 0.58 16
8 N -0.91 -26.76 12.94 55.43 0.72 -26.04 16
9 Si 1.06 24.86 29.91 -169.99 -5.08 19.78 16
10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16
12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16
13 N -0.67 -14.09 5.60 -109.23 -0.61 -14.71 16
14 C 0.09 1.69 5.58 -4.98 -0.03 1.66 16
15 C -0.06 -1.00 5.44 -104.63 -0.57 -1.56 16
16 C -0.11 -1.64 9.70 -39.58 -0.38 -2.03 16
17 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16
18 C -0.11 -1.32 9.70 -39.58 -0.38 -1.70 16
19 C -0.08 -1.06 4.89 -104.62 -0.51 -1.57 16
20 C 0.10 1.06 5.12 -4.97 -0.03 1.03 16
21 N -0.53 -5.58 4.65 -236.12 -1.10 -6.68 16
22 C 0.05 0.53 5.16 -3.84 -0.02 0.51 16
23 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16
24 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16
25 C -0.12 -0.89 6.09 -26.65 -0.16 -1.05 16
26 C 0.05 0.48 5.46 -3.84 -0.02 0.45 16
27 C -0.09 -1.35 7.53 -39.59 -0.30 -1.65 16
28 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16
29 H 0.05 1.12 7.59 -51.93 -0.39 0.73 16
30 H 0.06 1.38 7.31 -51.93 -0.38 1.00 16
31 H 0.06 1.49 6.35 -51.92 -0.33 1.16 16
32 H 0.02 0.40 7.33 -51.93 -0.38 0.02 16
33 H 0.27 7.93 6.03 -40.82 -0.25 7.69 16
34 H 0.33 7.11 8.29 -39.29 -0.33 6.78 16
35 H 0.07 1.26 7.24 -51.93 -0.38 0.89 16
36 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16
37 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16
38 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16
39 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16
40 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16
41 H 0.04 0.48 8.07 -51.93 -0.42 0.06 16
42 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16
43 H 0.08 1.01 5.75 -51.93 -0.30 0.71 16
44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16
45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
46 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16
47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
48 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
50 H 0.07 0.57 8.02 -51.93 -0.42 0.16 16
51 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16
52 H 0.12 1.71 7.95 -52.49 -0.42 1.29 16
LS Contribution 398.78 15.07 6.01 6.01
Total: -1.00 -28.70 398.78 -12.92 -41.62
By element:
Atomic # 1 Polarization: 15.40 SS G_CDS: -9.46 Total: 5.94 kcal
Atomic # 6 Polarization: -22.52 SS G_CDS: -3.39 Total: -25.91 kcal
Atomic # 7 Polarization: -46.44 SS G_CDS: -0.99 Total: -47.43 kcal
Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -28.70 -12.92 -41.62 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000565168032.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.974 kcal
(2) G-P(sol) polarization free energy of solvation -28.699 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.275 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.920 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.355 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds