Wall clock time and date at job start Tue Mar 31 2020 11:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47070 * 2 1 4 4 H 1.09001 * 109.47410 * 184.46219 * 3 2 1 5 5 C 1.50701 * 109.47393 * 304.45928 * 3 2 1 6 6 H 1.07998 * 119.99991 * 115.14596 * 5 3 2 7 7 C 1.37879 * 119.99991 * 295.14989 * 5 3 2 8 8 N 1.31511 * 120.00126 * 352.97123 * 7 5 3 9 9 Si 1.86800 * 119.99925 * 172.96798 * 7 5 3 10 10 H 1.48502 * 109.47100 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47351 * 300.00077 * 9 7 5 12 12 H 1.48497 * 109.47212 * 60.00352 * 9 7 5 13 13 N 1.46897 * 109.47301 * 64.45943 * 3 2 1 14 14 C 1.46899 * 110.99929 * 85.30098 * 13 3 2 15 15 C 1.50699 * 109.47214 * 185.03781 * 14 13 3 16 16 C 1.38260 * 119.99795 * 269.72333 * 15 14 13 17 17 C 1.38221 * 119.99972 * 179.74014 * 16 15 14 18 18 C 1.38253 * 119.99799 * 0.55732 * 17 16 15 19 19 C 1.38220 * 119.99882 * 359.69919 * 18 17 16 20 20 C 1.50704 * 119.99551 * 180.02562 * 19 18 17 21 21 N 1.46899 * 109.46917 * 270.01728 * 20 19 18 22 22 C 1.46839 * 111.00374 * 294.21292 * 21 20 19 23 23 C 1.53041 * 109.52304 * 174.16232 * 22 21 20 24 24 C 1.53119 * 109.27553 * 59.18088 * 23 22 21 25 25 C 1.53121 * 109.16039 * 302.34198 * 24 23 22 26 26 C 1.46851 * 110.99732 * 170.00007 * 21 20 19 27 27 C 1.38208 * 120.00287 * 89.99927 * 15 14 13 28 28 H 1.09001 * 109.46937 * 185.53911 * 1 2 3 29 29 H 1.08993 * 109.46731 * 305.53766 * 1 2 3 30 30 H 1.08997 * 109.47208 * 65.53992 * 1 2 3 31 31 H 1.09009 * 109.47037 * 240.00466 * 2 1 3 32 32 H 1.08992 * 109.47619 * 120.00340 * 2 1 3 33 33 H 0.96996 * 120.00069 * 356.30728 * 8 7 5 34 34 H 1.00905 * 111.00328 * 209.25517 * 13 3 2 35 35 H 1.09003 * 109.47374 * 305.03471 * 14 13 3 36 36 H 1.08998 * 109.47277 * 65.03674 * 14 13 3 37 37 H 1.07998 * 120.00074 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.99708 * 180.27731 * 17 16 15 39 39 H 1.07999 * 120.00257 * 179.71918 * 18 17 16 40 40 H 1.08994 * 109.47577 * 30.02425 * 20 19 18 41 41 H 1.09000 * 109.46523 * 150.02120 * 20 19 18 42 42 H 1.08998 * 109.46212 * 294.17688 * 22 21 20 43 43 H 1.08998 * 109.46298 * 54.14520 * 22 21 20 44 44 H 1.08998 * 109.50001 * 299.23426 * 23 22 21 45 45 H 1.08997 * 109.50277 * 179.12066 * 23 22 21 46 46 H 1.09008 * 109.52122 * 182.44247 * 24 23 22 47 47 H 1.08997 * 109.52709 * 62.24995 * 24 23 22 48 48 H 1.08998 * 109.50432 * 297.71730 * 25 24 23 49 49 H 1.09002 * 109.50199 * 177.59885 * 25 24 23 50 50 H 1.09004 * 109.46351 * 305.86420 * 26 21 20 51 51 H 1.09006 * 109.45745 * 65.82631 * 26 21 20 52 52 H 1.08000 * 120.00291 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1270 1.4436 -0.0800 5 6 1.4495 2.1841 -1.1715 6 1 0.7753 3.0108 -1.0030 7 6 1.7699 1.8071 -2.4585 8 7 2.6939 0.8945 -2.6656 9 14 0.8914 2.5926 -3.9078 10 1 1.4140 2.0184 -5.1737 11 1 -0.5657 2.3248 -3.8079 12 1 1.1274 4.0587 -3.8943 13 7 1.6402 2.1032 1.2496 14 6 2.6092 1.8344 2.3205 15 6 2.1050 2.4223 3.6133 16 6 2.4390 3.7184 3.9600 17 6 1.9722 4.2594 5.1431 18 6 1.1808 3.5007 5.9854 19 6 0.8513 2.2032 5.6413 20 6 -0.0118 1.3763 6.5592 21 7 0.8405 0.6478 7.5083 22 6 1.6723 -0.3439 6.8148 23 6 2.6471 -0.9789 7.8091 24 6 1.8553 -1.6478 8.9362 25 6 0.9613 -0.6035 9.6107 26 6 0.0355 0.0206 8.5642 27 6 1.3135 1.6639 4.4551 28 1 -0.3633 -1.0229 0.0992 29 1 -0.3632 0.5973 0.8362 30 1 -0.3633 0.4255 -0.9354 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.1875 0.5254 -1.9167 34 1 1.5198 3.0955 1.1116 35 1 2.7344 0.7577 2.4355 36 1 3.5676 2.2864 2.0652 37 1 3.0608 4.3096 3.3041 38 1 2.2294 5.2734 5.4117 39 1 0.8198 3.9218 6.9120 40 1 -0.6897 2.0304 7.1075 41 1 -0.5905 0.6647 5.9703 42 1 1.0345 -1.1174 6.3871 43 1 2.2331 0.1455 6.0185 44 1 3.2944 -0.2079 8.2269 45 1 3.2536 -1.7261 7.2974 46 1 2.5462 -2.0640 9.6694 47 1 1.2369 -2.4449 8.5236 48 1 1.5822 0.1734 10.0569 49 1 0.3635 -1.0826 10.3861 50 1 -0.5926 0.7747 9.0385 51 1 -0.5947 -0.7547 8.1282 52 1 1.0566 0.6499 4.1867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565168032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:45 Heat of formation + Delta-G solvation = -10.360575 kcal Electronic energy + Delta-G solvation = -26712.701649 eV Core-core repulsion = 23288.884418 eV Total energy + Delta-G solvation = -3423.817232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80904 -39.51745 -38.27945 -35.46543 -34.59837 -33.03123 -32.08789 -31.49866 -31.42497 -28.07097 -27.24479 -25.81356 -25.23348 -24.00232 -23.95480 -22.84319 -21.43401 -21.00181 -20.57882 -19.01179 -17.40517 -17.08843 -16.77625 -16.30069 -16.14165 -15.97369 -15.65636 -15.39793 -15.35910 -15.23397 -14.83880 -14.44205 -14.35574 -14.22045 -13.89379 -13.75104 -13.61732 -13.37191 -13.16775 -13.06366 -12.90925 -12.70868 -12.61866 -12.16001 -12.08624 -12.04850 -11.96395 -11.88931 -11.70376 -11.60471 -11.53229 -11.29818 -11.21592 -10.61053 -10.43580 -9.71609 -9.61439 -9.25895 -9.14745 -8.57946 -6.29029 0.43225 0.51383 1.53700 1.60565 1.79469 2.56893 2.69944 3.15180 3.21279 3.63629 3.75187 3.83808 3.89158 3.99613 4.04889 4.07268 4.22726 4.30803 4.31583 4.37755 4.39731 4.47188 4.53170 4.58254 4.59594 4.63937 4.65745 4.69036 4.72727 4.79384 4.85588 4.94191 5.01559 5.03815 5.06914 5.13101 5.17770 5.19211 5.21489 5.28708 5.36655 5.46362 5.49640 5.58668 5.66148 5.68995 5.74757 5.87800 6.06365 6.07689 6.12286 6.19490 6.46806 6.58881 6.78583 7.49399 8.78916 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.002719 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.624082 B =10295.731295 C =10963.713462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.208 3.792 4 H -0.041 1.041 5 C -0.597 4.597 6 H 0.049 0.951 7 C -0.023 4.023 8 N -0.935 5.935 9 Si 1.108 2.892 10 H -0.287 1.287 11 H -0.273 1.273 12 H -0.272 1.272 13 N -0.667 5.667 14 C 0.102 3.898 15 C -0.082 4.082 16 C -0.126 4.126 17 C -0.119 4.119 18 C -0.103 4.103 19 C -0.082 4.082 20 C 0.099 3.901 21 N -0.536 5.536 22 C 0.050 3.950 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.112 4.112 26 C 0.052 3.948 27 C -0.101 4.101 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.258 0.742 34 H 0.333 0.667 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.118 0.882 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.099 0.901 41 H 0.035 0.965 42 H 0.025 0.975 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.029 0.971 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 0.210 25.581 25.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.099 3.901 4 H -0.023 1.023 5 C -0.635 4.635 6 H 0.068 0.932 7 C -0.222 4.222 8 N -0.572 5.572 9 Si 0.930 3.070 10 H -0.213 1.213 11 H -0.198 1.198 12 H -0.197 1.197 13 N -0.297 5.297 14 C -0.027 4.027 15 C -0.083 4.083 16 C -0.145 4.145 17 C -0.137 4.137 18 C -0.122 4.122 19 C -0.082 4.082 20 C -0.028 4.028 21 N -0.261 5.261 22 C -0.077 4.077 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.150 4.150 26 C -0.075 4.075 27 C -0.120 4.120 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.150 0.850 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.136 0.864 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.118 0.882 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.105 0.895 51 H 0.048 0.952 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.321 -0.020 24.355 24.736 hybrid contribution 0.816 -0.254 0.375 0.933 sum -3.506 -0.274 24.730 24.979 Atomic orbital electron populations 1.21285 0.95113 0.98902 1.01085 1.21365 0.97443 0.97367 0.97617 1.19079 0.90971 0.92572 0.87435 1.02340 1.22198 1.30415 1.18160 0.92766 0.93243 1.27001 0.96334 0.95780 1.03067 1.70902 1.22626 1.28629 1.35066 0.83046 0.75496 0.75623 0.72794 1.21281 1.19809 1.19749 1.60551 1.46947 1.15781 1.06403 1.20815 0.92752 0.99538 0.89640 1.19740 0.98572 0.94971 0.94972 1.21185 1.00814 0.94575 0.97915 1.21338 0.97760 1.00720 0.93846 1.21202 0.97846 0.93366 0.99776 1.19804 0.98916 0.95171 0.94321 1.21001 0.93110 0.96009 0.92710 1.61968 1.23724 1.27629 1.12735 1.22148 0.95839 0.93082 0.96678 1.21565 0.97547 0.99568 0.96596 1.21588 0.98747 0.97795 0.97671 1.21570 0.98026 0.98211 0.97207 1.22194 0.94977 0.97750 0.92593 1.20847 0.97592 0.99338 0.94246 0.94075 0.92669 0.94618 0.94949 0.94851 0.93183 0.84992 0.91899 0.96189 0.86369 0.83795 0.83966 0.88243 0.94664 0.95698 0.91766 0.91722 0.91400 0.90794 0.92430 0.91427 0.89971 0.89546 0.95236 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.72 9.43 71.98 0.68 -4.04 16 2 C -0.10 -4.77 5.51 30.59 0.17 -4.60 16 3 C 0.21 10.52 1.93 44.17 0.09 10.60 16 4 H -0.04 -2.29 7.22 -2.39 -0.02 -2.31 16 5 C -0.60 -32.78 7.13 25.60 0.18 -32.59 16 6 H 0.05 2.71 7.67 -2.91 -0.02 2.68 16 7 C -0.02 -1.29 5.26 84.66 0.45 -0.84 16 8 N -0.93 -56.43 12.94 21.45 0.28 -56.16 16 9 Si 1.11 50.06 29.91 68.60 2.05 52.11 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 13 N -0.67 -28.54 5.60 -499.48 -2.80 -31.34 16 14 C 0.10 3.77 5.58 85.56 0.48 4.24 16 15 C -0.08 -2.59 5.44 -19.87 -0.11 -2.69 16 16 C -0.13 -3.52 9.70 22.27 0.22 -3.30 16 17 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 18 C -0.10 -2.26 9.70 22.27 0.22 -2.04 16 19 C -0.08 -1.97 4.89 -19.86 -0.10 -2.07 16 20 C 0.10 1.98 5.12 85.56 0.44 2.42 16 21 N -0.54 -10.37 4.65 -900.94 -4.19 -14.55 16 22 C 0.05 1.06 5.16 86.33 0.45 1.51 16 23 C -0.11 -2.03 6.09 30.65 0.19 -1.84 16 24 C -0.12 -1.70 6.00 30.67 0.18 -1.51 16 25 C -0.11 -1.46 6.09 30.64 0.19 -1.27 16 26 C 0.05 0.79 5.46 86.32 0.47 1.26 16 27 C -0.10 -2.93 7.53 22.27 0.17 -2.76 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 2.37 7.59 -2.39 -0.02 2.36 16 30 H 0.03 1.70 7.31 -2.39 -0.02 1.69 16 31 H 0.03 1.71 6.35 -2.38 -0.02 1.69 16 32 H 0.03 1.47 7.33 -2.39 -0.02 1.45 16 33 H 0.26 15.81 6.03 -92.71 -0.56 15.25 16 34 H 0.33 14.38 8.29 -89.69 -0.74 13.64 16 35 H 0.06 2.38 7.24 -2.39 -0.02 2.36 16 36 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 37 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.10 1.62 7.93 -2.39 -0.02 1.60 16 41 H 0.04 0.76 8.07 -2.39 -0.02 0.74 16 42 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.06 1.59 5.75 -2.39 -0.01 1.57 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.09 1.09 8.02 -2.39 -0.02 1.07 16 51 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 52 H 0.11 3.23 7.95 -2.91 -0.02 3.20 16 Total: -1.00 -62.35 398.78 0.25 -62.10 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.33 Total: 29.87 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 4.57 Total: -42.04 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -6.71 Total: -102.04 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.05 Total: 52.11 kcal Total: -62.35 0.25 -62.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565168032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.741 kcal (2) G-P(sol) polarization free energy of solvation -62.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds