Wall clock time and date at job start Tue Mar 31 2020 10:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31893 * 119.61179 * 2 1 4 4 C 1.31852 * 121.71834 * 180.26846 * 3 2 1 5 5 C 1.50701 * 119.61162 * 179.75370 * 4 3 2 6 6 C 1.53006 * 109.47197 * 264.72024 * 5 4 3 7 7 C 1.53006 * 109.47066 * 144.72440 * 5 4 3 8 8 C 1.38221 * 120.76881 * 359.47244 * 4 3 2 9 9 C 1.38626 * 119.16111 * 0.25692 * 8 4 3 10 10 C 1.38175 * 119.61971 * 179.74618 * 2 1 3 11 11 C 1.50703 * 120.41786 * 0.02562 * 10 2 1 12 12 N 1.46903 * 109.47148 * 285.67815 * 11 10 2 13 13 C 1.46845 * 111.00102 * 288.51631 * 12 11 10 14 14 C 1.53033 * 109.52039 * 174.16134 * 13 12 11 15 15 C 1.53118 * 109.28250 * 59.17869 * 14 13 12 16 16 C 1.52998 * 109.52618 * 182.43872 * 15 14 13 17 17 C 1.50706 * 109.47003 * 294.68176 * 16 15 14 18 18 H 1.07993 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99842 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99893 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99842 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46993 * 89.99781 * 21 19 17 23 23 H 1.48500 * 109.46848 * 209.99954 * 21 19 17 24 24 H 1.48496 * 109.47274 * 329.99730 * 21 19 17 25 25 C 1.53121 * 109.15778 * 302.34562 * 15 14 13 26 26 C 1.46847 * 110.99769 * 164.30540 * 12 11 10 27 27 H 1.09002 * 109.47014 * 264.83499 * 1 2 3 28 28 H 1.08995 * 109.47362 * 24.83615 * 1 2 3 29 29 H 1.08999 * 109.46498 * 144.83776 * 1 2 3 30 30 H 1.08995 * 109.47710 * 24.72580 * 5 4 3 31 31 H 1.08995 * 109.47245 * 300.00841 * 6 5 4 32 32 H 1.09006 * 109.46570 * 60.00664 * 6 5 4 33 33 H 1.08992 * 109.47239 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.46746 * 60.00291 * 7 5 4 35 35 H 1.09002 * 109.47355 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.47238 * 299.99846 * 7 5 4 37 37 H 1.07999 * 120.42159 * 180.23036 * 8 4 3 38 38 H 1.08001 * 120.79173 * 179.97438 * 9 8 4 39 39 H 1.08999 * 109.46800 * 45.68065 * 11 10 2 40 40 H 1.09003 * 109.46581 * 165.68226 * 11 10 2 41 41 H 1.09000 * 109.46157 * 294.17725 * 13 12 11 42 42 H 1.09000 * 109.46272 * 54.14345 * 13 12 11 43 43 H 1.09000 * 109.50946 * 299.23454 * 14 13 12 44 44 H 1.09004 * 109.53264 * 179.13640 * 14 13 12 45 45 H 1.09003 * 109.57503 * 62.27440 * 15 14 13 46 46 H 1.09001 * 109.47103 * 54.68142 * 16 15 14 47 47 H 1.09004 * 109.47089 * 174.68109 * 16 15 14 48 48 H 0.97004 * 119.99757 * 179.97438 * 20 19 17 49 49 H 1.08996 * 109.50176 * 297.71280 * 25 15 14 50 50 H 1.08997 * 109.53522 * 177.61139 * 25 15 14 51 51 H 1.09007 * 109.45933 * 305.85697 * 26 12 11 52 52 H 1.08990 * 109.46548 * 65.83427 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1467 0.0000 4 6 3.4764 1.1951 -0.0053 5 6 4.1723 2.5318 -0.0106 6 6 4.5200 2.9201 -1.4492 7 6 5.4557 2.4419 0.8176 8 6 4.2267 0.0343 -0.0001 9 6 3.5767 -1.1901 0.0054 10 6 2.1900 -1.2012 0.0053 11 6 1.4373 -2.5068 0.0105 12 7 0.8680 -2.7385 1.3448 13 6 1.9191 -3.0693 2.3153 14 6 1.3110 -3.1604 3.7166 15 6 0.2234 -4.2382 3.7268 16 6 -0.4302 -4.2921 5.1091 17 6 0.5832 -4.7492 6.1265 18 1 1.5924 -4.9787 5.8180 19 6 0.2217 -4.8754 7.4510 20 7 -1.0074 -4.5964 7.8266 21 14 1.4780 -5.4413 8.7122 22 1 2.1816 -4.2605 9.2743 23 1 0.7877 -6.1727 9.8048 24 1 2.4635 -6.3406 8.0602 25 6 -0.8339 -3.8951 2.6738 26 6 -0.1636 -3.7828 1.3026 27 1 -0.3633 -0.0925 1.0235 28 1 -0.3634 0.9326 -0.4316 29 1 -0.3632 -0.8402 -0.5918 30 1 3.5140 3.2861 0.4203 31 1 5.1783 2.1658 -1.8801 32 1 3.6057 2.9841 -2.0392 33 1 5.0229 3.8870 -1.4531 34 1 6.1142 1.6877 0.3866 35 1 5.9593 3.4086 0.8134 36 1 5.2081 2.1654 1.8425 37 1 5.3057 0.0806 -0.0007 38 1 4.1369 -2.1134 0.0091 39 1 0.6341 -2.4660 -0.7252 40 1 2.1187 -3.3199 -0.2399 41 1 2.3687 -4.0266 2.0516 42 1 2.6840 -2.2929 2.3011 43 1 0.8733 -2.1993 3.9867 44 1 2.0883 -3.4210 4.4350 45 1 0.6669 -5.2067 3.4955 46 1 -0.7933 -3.3002 5.3782 47 1 -1.2658 -4.9918 5.0888 48 1 -1.2618 -4.6855 8.7584 49 1 -1.3052 -2.9456 2.9273 50 1 -1.5892 -4.6805 2.6463 51 1 -0.9114 -3.5244 0.5528 52 1 0.2957 -4.7367 1.0438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574985887.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:16 Heat of formation + Delta-G solvation = 1.653026 kcal Electronic energy + Delta-G solvation = -26838.741195 eV Core-core repulsion = 23415.444912 eV Total energy + Delta-G solvation = -3423.296283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.70838 -38.69881 -36.26606 -34.59732 -32.94625 -32.49051 -31.36868 -30.36334 -28.49690 -27.63093 -27.08771 -25.62633 -23.71578 -22.79368 -22.48003 -22.10978 -20.62518 -19.98489 -18.90563 -16.92082 -16.31073 -16.24436 -15.71507 -15.22460 -14.78895 -14.47664 -14.45139 -14.17115 -14.02421 -13.63285 -13.49966 -13.32288 -13.10183 -12.87445 -12.68678 -12.49897 -12.22914 -12.14445 -12.06635 -11.91805 -11.80767 -11.57260 -11.37556 -11.22707 -11.11116 -10.98490 -10.79493 -10.63536 -10.57469 -10.26708 -9.95933 -9.72647 -9.51843 -9.42431 -9.03643 -8.86891 -8.67652 -8.31241 -8.10435 -5.96066 -3.97372 1.05770 1.25952 3.33073 3.39480 3.42168 3.62934 4.02097 4.18883 4.48444 4.50511 4.68744 4.82380 4.85535 4.87703 4.94849 5.05836 5.23091 5.31093 5.32717 5.37188 5.39257 5.46933 5.51137 5.54848 5.56381 5.63047 5.68541 5.71042 5.73650 5.75490 5.82029 5.88970 5.96571 5.97651 5.98283 6.12876 6.14897 6.18107 6.24385 6.30363 6.45307 6.59105 6.67980 6.71660 6.99336 7.11591 7.21435 7.31091 7.37720 7.72173 7.89068 8.03187 8.04901 8.48003 9.09193 9.65955 11.15293 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015476 B = 0.002869 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.797616 B = 9755.561810 C =10777.756179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.157 3.843 3 N -0.487 5.487 4 C 0.136 3.864 5 C -0.046 4.046 6 C -0.139 4.139 7 C -0.147 4.147 8 C -0.180 4.180 9 C -0.067 4.067 10 C -0.130 4.130 11 C 0.098 3.902 12 N -0.529 5.529 13 C 0.058 3.942 14 C -0.098 4.098 15 C -0.081 4.081 16 C 0.028 3.972 17 C -0.514 4.514 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.111 4.111 26 C 0.060 3.940 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.083 0.917 40 H 0.039 0.961 41 H 0.026 0.974 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.016 0.984 47 H 0.014 0.986 48 H 0.259 0.741 49 H 0.066 0.934 50 H 0.060 0.940 51 H 0.066 0.934 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.222 10.573 -20.721 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.019 3.981 3 N -0.196 5.196 4 C -0.002 4.002 5 C -0.065 4.065 6 C -0.197 4.197 7 C -0.205 4.205 8 C -0.200 4.200 9 C -0.093 4.093 10 C -0.132 4.132 11 C -0.030 4.030 12 N -0.253 5.253 13 C -0.070 4.070 14 C -0.136 4.136 15 C -0.099 4.099 16 C -0.009 4.009 17 C -0.552 4.552 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.149 4.149 26 C -0.068 4.068 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.035 0.965 47 H 0.032 0.968 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.079 0.921 51 H 0.085 0.915 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.389 11.763 -20.405 25.002 hybrid contribution 1.637 -1.963 0.630 2.633 sum 10.026 9.799 -19.775 24.240 Atomic orbital electron populations 1.20681 0.88585 1.02266 1.03910 1.21081 0.97009 0.87229 0.92745 1.67354 1.09276 1.29465 1.13507 1.21113 0.89394 0.94994 0.94688 1.20022 0.96332 0.93147 0.97045 1.21785 1.01639 1.01271 0.95004 1.21924 0.96412 1.02119 1.00047 1.21852 1.01159 0.92749 1.04237 1.21481 0.93849 0.98191 0.95770 1.20559 0.93848 0.96322 1.02517 1.20913 0.97459 0.92486 0.92179 1.61932 1.13401 1.44801 1.05208 1.22199 0.92986 0.98156 0.93645 1.21527 0.98970 0.99833 0.93263 1.21228 0.94794 0.96771 0.97144 1.19112 0.95544 0.97093 0.89119 1.21250 0.97019 1.44408 0.92528 0.92783 1.25017 0.95138 0.95737 0.98613 1.69965 1.17427 1.49419 1.16748 0.86662 0.81585 0.78783 0.81378 1.20725 1.21302 1.19986 1.21684 0.98294 1.01667 0.93251 1.22124 0.93737 0.91928 0.98968 0.89315 0.91463 0.90923 0.89352 0.92641 0.92389 0.92014 0.92240 0.91945 0.92211 0.85052 0.85303 0.89854 0.94252 0.95533 0.91879 0.91965 0.91047 0.93115 0.96541 0.96784 0.93107 0.91564 0.92117 0.91545 0.95386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 9.53 36.01 0.34 -0.76 16 2 C 0.16 2.05 6.78 -82.59 -0.56 1.49 16 3 N -0.49 -6.62 10.19 -5.74 -0.06 -6.68 16 4 C 0.14 1.60 5.79 -82.59 -0.48 1.12 16 5 C -0.05 -0.43 3.23 -91.77 -0.30 -0.72 16 6 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16 7 C -0.15 -1.12 8.62 37.16 0.32 -0.80 16 8 C -0.18 -1.92 9.18 -39.44 -0.36 -2.29 16 9 C -0.07 -0.74 9.22 -39.28 -0.36 -1.10 16 10 C -0.13 -1.58 4.64 -104.48 -0.49 -2.06 16 11 C 0.10 1.12 4.44 -4.97 -0.02 1.10 16 12 N -0.53 -7.33 4.46 -236.12 -1.05 -8.38 16 13 C 0.06 0.89 5.30 -3.84 -0.02 0.87 16 14 C -0.10 -1.86 5.15 -26.65 -0.14 -2.00 16 15 C -0.08 -1.63 2.20 -90.50 -0.20 -1.83 16 16 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 17 C -0.51 -14.38 8.44 -34.44 -0.29 -14.67 16 18 H 0.05 1.47 7.08 -52.49 -0.37 1.10 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 21 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 25 C -0.11 -1.88 5.38 -26.65 -0.14 -2.02 16 26 C 0.06 0.83 5.44 -3.83 -0.02 0.81 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.72 6.47 -51.93 -0.34 0.38 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.40 6.49 -51.93 -0.34 0.06 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.13 1.10 6.31 -52.49 -0.33 0.77 16 38 H 0.13 1.20 8.04 -52.49 -0.42 0.78 16 39 H 0.08 0.84 6.49 -51.93 -0.34 0.51 16 40 H 0.04 0.43 7.91 -51.93 -0.41 0.02 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.96 6.85 -51.93 -0.36 0.60 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.45 7.05 -51.93 -0.37 1.09 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.07 0.79 7.96 -51.93 -0.41 0.37 16 52 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 400.48 15.07 6.04 6.04 Total: -1.00 -30.83 400.48 -11.54 -42.37 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -9.58 Total: -2.23 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -2.60 Total: -21.50 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.37 Total: -41.43 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.83 -11.54 -42.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574985887.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.018 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds