Wall clock time and date at job start Tue Mar 31 2020 10:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31893 * 119.61179 * 2 1 4 4 C 1.31852 * 121.71834 * 180.26846 * 3 2 1 5 5 C 1.50701 * 119.61162 * 179.75370 * 4 3 2 6 6 C 1.53006 * 109.47197 * 264.72024 * 5 4 3 7 7 C 1.53006 * 109.47066 * 144.72440 * 5 4 3 8 8 C 1.38221 * 120.76881 * 359.47244 * 4 3 2 9 9 C 1.38626 * 119.16111 * 0.25692 * 8 4 3 10 10 C 1.38175 * 119.61971 * 179.74618 * 2 1 3 11 11 C 1.50703 * 120.41786 * 0.02562 * 10 2 1 12 12 N 1.46903 * 109.47148 * 285.67815 * 11 10 2 13 13 C 1.46845 * 111.00102 * 288.51631 * 12 11 10 14 14 C 1.53033 * 109.52039 * 174.16134 * 13 12 11 15 15 C 1.53118 * 109.28250 * 59.17869 * 14 13 12 16 16 C 1.52998 * 109.52618 * 182.43872 * 15 14 13 17 17 C 1.50706 * 109.47003 * 294.68176 * 16 15 14 18 18 H 1.07993 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99842 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99893 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99842 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46993 * 89.99781 * 21 19 17 23 23 H 1.48500 * 109.46848 * 209.99954 * 21 19 17 24 24 H 1.48496 * 109.47274 * 329.99730 * 21 19 17 25 25 C 1.53121 * 109.15778 * 302.34562 * 15 14 13 26 26 C 1.46847 * 110.99769 * 164.30540 * 12 11 10 27 27 H 1.09002 * 109.47014 * 264.83499 * 1 2 3 28 28 H 1.08995 * 109.47362 * 24.83615 * 1 2 3 29 29 H 1.08999 * 109.46498 * 144.83776 * 1 2 3 30 30 H 1.08995 * 109.47710 * 24.72580 * 5 4 3 31 31 H 1.08995 * 109.47245 * 300.00841 * 6 5 4 32 32 H 1.09006 * 109.46570 * 60.00664 * 6 5 4 33 33 H 1.08992 * 109.47239 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.46746 * 60.00291 * 7 5 4 35 35 H 1.09002 * 109.47355 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.47238 * 299.99846 * 7 5 4 37 37 H 1.07999 * 120.42159 * 180.23036 * 8 4 3 38 38 H 1.08001 * 120.79173 * 179.97438 * 9 8 4 39 39 H 1.08999 * 109.46800 * 45.68065 * 11 10 2 40 40 H 1.09003 * 109.46581 * 165.68226 * 11 10 2 41 41 H 1.09000 * 109.46157 * 294.17725 * 13 12 11 42 42 H 1.09000 * 109.46272 * 54.14345 * 13 12 11 43 43 H 1.09000 * 109.50946 * 299.23454 * 14 13 12 44 44 H 1.09004 * 109.53264 * 179.13640 * 14 13 12 45 45 H 1.09003 * 109.57503 * 62.27440 * 15 14 13 46 46 H 1.09001 * 109.47103 * 54.68142 * 16 15 14 47 47 H 1.09004 * 109.47089 * 174.68109 * 16 15 14 48 48 H 0.97004 * 119.99757 * 179.97438 * 20 19 17 49 49 H 1.08996 * 109.50176 * 297.71280 * 25 15 14 50 50 H 1.08997 * 109.53522 * 177.61139 * 25 15 14 51 51 H 1.09007 * 109.45933 * 305.85697 * 26 12 11 52 52 H 1.08990 * 109.46548 * 65.83427 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1467 0.0000 4 6 3.4764 1.1951 -0.0053 5 6 4.1723 2.5318 -0.0106 6 6 4.5200 2.9201 -1.4492 7 6 5.4557 2.4419 0.8176 8 6 4.2267 0.0343 -0.0001 9 6 3.5767 -1.1901 0.0054 10 6 2.1900 -1.2012 0.0053 11 6 1.4373 -2.5068 0.0105 12 7 0.8680 -2.7385 1.3448 13 6 1.9191 -3.0693 2.3153 14 6 1.3110 -3.1604 3.7166 15 6 0.2234 -4.2382 3.7268 16 6 -0.4302 -4.2921 5.1091 17 6 0.5832 -4.7492 6.1265 18 1 1.5924 -4.9787 5.8180 19 6 0.2217 -4.8754 7.4510 20 7 -1.0074 -4.5964 7.8266 21 14 1.4780 -5.4413 8.7122 22 1 2.1816 -4.2605 9.2743 23 1 0.7877 -6.1727 9.8048 24 1 2.4635 -6.3406 8.0602 25 6 -0.8339 -3.8951 2.6738 26 6 -0.1636 -3.7828 1.3026 27 1 -0.3633 -0.0925 1.0235 28 1 -0.3634 0.9326 -0.4316 29 1 -0.3632 -0.8402 -0.5918 30 1 3.5140 3.2861 0.4203 31 1 5.1783 2.1658 -1.8801 32 1 3.6057 2.9841 -2.0392 33 1 5.0229 3.8870 -1.4531 34 1 6.1142 1.6877 0.3866 35 1 5.9593 3.4086 0.8134 36 1 5.2081 2.1654 1.8425 37 1 5.3057 0.0806 -0.0007 38 1 4.1369 -2.1134 0.0091 39 1 0.6341 -2.4660 -0.7252 40 1 2.1187 -3.3199 -0.2399 41 1 2.3687 -4.0266 2.0516 42 1 2.6840 -2.2929 2.3011 43 1 0.8733 -2.1993 3.9867 44 1 2.0883 -3.4210 4.4350 45 1 0.6669 -5.2067 3.4955 46 1 -0.7933 -3.3002 5.3782 47 1 -1.2658 -4.9918 5.0888 48 1 -1.2618 -4.6855 8.7584 49 1 -1.3052 -2.9456 2.9273 50 1 -1.5892 -4.6805 2.6463 51 1 -0.9114 -3.5244 0.5528 52 1 0.2957 -4.7367 1.0438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574985887.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:15 Heat of formation + Delta-G solvation = -14.536957 kcal Electronic energy + Delta-G solvation = -26839.443245 eV Core-core repulsion = 23415.444912 eV Total energy + Delta-G solvation = -3423.998333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58110 -39.94955 -37.18789 -35.99597 -34.47390 -33.64347 -32.55787 -31.68156 -29.95136 -28.60497 -27.88400 -26.85682 -25.27395 -24.05694 -23.38350 -23.21585 -22.10257 -20.78258 -20.42466 -18.43488 -17.78666 -17.13518 -16.89167 -16.48267 -16.16182 -15.67090 -15.45517 -15.14557 -15.00355 -14.93986 -14.74826 -14.39632 -14.12717 -14.06395 -13.88530 -13.70723 -13.34567 -13.19952 -13.14576 -13.03402 -12.88765 -12.82209 -12.68700 -12.57826 -12.31678 -12.16810 -12.03605 -12.01307 -11.86832 -11.77840 -11.62231 -11.26101 -10.88809 -10.72098 -10.59419 -10.52191 -10.29781 -9.55234 -9.17360 -8.17945 -6.27445 0.18995 0.40167 1.38099 1.39277 1.49932 2.40749 2.71949 3.14082 3.16656 3.24437 3.75502 3.82702 3.97375 4.02438 4.05377 4.11255 4.15301 4.17805 4.24403 4.34178 4.40203 4.50765 4.56181 4.64249 4.66227 4.72377 4.78477 4.79787 4.82386 4.84130 4.89295 4.92154 4.96759 4.97253 5.00181 5.09082 5.11338 5.16640 5.27942 5.31630 5.33201 5.36768 5.39538 5.42588 5.45094 5.50101 5.58368 5.81313 5.87244 5.89932 6.18042 6.23717 6.30635 6.88974 7.15951 7.40809 8.93997 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015476 B = 0.002869 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.797616 B = 9755.561810 C =10777.756179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.136 3.864 3 N -0.516 5.516 4 C 0.123 3.877 5 C -0.047 4.047 6 C -0.133 4.133 7 C -0.143 4.143 8 C -0.181 4.181 9 C -0.071 4.071 10 C -0.140 4.140 11 C 0.103 3.897 12 N -0.538 5.538 13 C 0.072 3.928 14 C -0.092 4.092 15 C -0.073 4.073 16 C 0.034 3.966 17 C -0.528 4.528 18 H 0.059 0.941 19 C -0.003 4.003 20 N -0.936 5.936 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.262 1.262 25 C -0.107 4.107 26 C 0.068 3.932 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.101 0.899 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.067 0.933 43 H 0.041 0.959 44 H 0.052 0.948 45 H 0.049 0.951 46 H -0.016 1.016 47 H -0.013 1.013 48 H 0.262 0.738 49 H 0.053 0.947 50 H 0.063 0.937 51 H 0.095 0.905 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.530 10.075 -22.481 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.001 4.001 3 N -0.226 5.226 4 C -0.015 4.015 5 C -0.067 4.067 6 C -0.191 4.191 7 C -0.201 4.201 8 C -0.200 4.200 9 C -0.097 4.097 10 C -0.142 4.142 11 C -0.024 4.024 12 N -0.263 5.263 13 C -0.056 4.056 14 C -0.130 4.130 15 C -0.091 4.091 16 C -0.003 4.003 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.200 4.200 20 N -0.577 5.577 21 Si 0.784 3.216 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.186 1.186 25 C -0.145 4.145 26 C -0.059 4.059 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.173 0.827 38 H 0.167 0.833 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.003 0.997 47 H 0.005 0.995 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.113 0.887 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.704 11.266 -22.186 27.088 hybrid contribution 0.892 -1.748 1.188 2.294 sum 11.596 9.518 -20.998 25.807 Atomic orbital electron populations 1.20639 0.88106 1.03037 1.03098 1.21352 0.97661 0.87677 0.93421 1.67361 1.10462 1.30153 1.14590 1.21588 0.89136 0.96531 0.94292 1.20094 0.96626 0.91684 0.98260 1.21742 1.01285 1.02424 0.93642 1.21901 0.95786 1.03443 0.98926 1.22138 1.02362 0.92266 1.03269 1.21797 0.93698 0.99209 0.94977 1.20670 0.94461 0.96194 1.02908 1.20940 0.98262 0.92472 0.90754 1.61840 1.13153 1.44837 1.06491 1.21950 0.93145 0.98840 0.91645 1.21381 0.97907 0.98017 0.95681 1.21069 0.95842 0.97293 0.94937 1.19007 0.94701 0.94231 0.92386 1.21652 0.97591 1.44039 0.93370 0.92250 1.25963 0.97207 0.95844 1.01032 1.70107 1.19577 1.50628 1.17338 0.85529 0.79015 0.78565 0.78464 1.20007 1.20856 1.18644 1.21592 0.97503 1.00972 0.94384 1.22046 0.94220 0.92527 0.97095 0.90979 0.91445 0.89259 0.90752 0.91870 0.93712 0.90314 0.90983 0.90393 0.93548 0.82699 0.83255 0.88076 0.92804 0.94563 0.91435 0.94062 0.92953 0.93215 0.99727 0.99488 0.92966 0.92865 0.91842 0.88682 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.04 9.53 71.24 0.68 -1.36 16 2 C 0.14 3.45 6.78 42.54 0.29 3.74 16 3 N -0.52 -13.94 10.19 -172.08 -1.75 -15.69 16 4 C 0.12 2.76 5.79 42.55 0.25 3.01 16 5 C -0.05 -0.83 3.23 -11.54 -0.04 -0.86 16 6 C -0.13 -1.83 9.18 71.98 0.66 -1.17 16 7 C -0.14 -1.92 8.62 71.98 0.62 -1.30 16 8 C -0.18 -3.49 9.18 22.36 0.21 -3.28 16 9 C -0.07 -1.40 9.22 22.47 0.21 -1.19 16 10 C -0.14 -3.12 4.64 -19.77 -0.09 -3.21 16 11 C 0.10 2.05 4.44 85.56 0.38 2.43 16 12 N -0.54 -13.78 4.46 -900.93 -4.02 -17.80 16 13 C 0.07 2.11 5.30 86.32 0.46 2.57 16 14 C -0.09 -3.52 5.15 30.64 0.16 -3.37 16 15 C -0.07 -2.99 2.20 -10.71 -0.02 -3.02 16 16 C 0.03 1.81 4.45 29.85 0.13 1.95 16 17 C -0.53 -30.29 8.44 25.60 0.22 -30.08 16 18 H 0.06 3.27 7.08 -2.91 -0.02 3.24 16 19 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 20 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16 21 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 25 C -0.11 -3.57 5.38 30.65 0.16 -3.41 16 26 C 0.07 1.71 5.44 86.33 0.47 2.18 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.61 6.47 -2.39 -0.02 1.59 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.78 6.49 -2.38 -0.02 0.76 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.16 2.14 6.31 -2.91 -0.02 2.12 16 38 H 0.15 2.26 8.04 -2.91 -0.02 2.24 16 39 H 0.10 1.67 6.49 -2.39 -0.02 1.65 16 40 H 0.05 0.95 7.91 -2.39 -0.02 0.93 16 41 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 1.93 6.85 -2.39 -0.02 1.92 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 2.16 7.05 -2.38 -0.02 2.15 16 45 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 46 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 47 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 48 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 49 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.09 1.90 7.96 -2.38 -0.02 1.89 16 52 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -68.88 400.48 2.60 -66.29 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.86 Total: 14.17 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 5.20 Total: -36.10 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -5.48 Total: -91.40 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.88 2.60 -66.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574985887.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.750 kcal (2) G-P(sol) polarization free energy of solvation -68.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds