Wall clock time and date at job start Tue Mar 31 2020 11:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.50671 * 2 1 4 4 C 1.53121 * 109.50122 * 120.07708 * 2 1 3 5 5 C 1.53127 * 109.15974 * 62.32407 * 4 2 1 6 6 H 1.08998 * 109.49992 * 297.71269 * 5 4 2 7 7 C 1.53002 * 109.53420 * 177.61456 * 5 4 2 8 8 C 1.53037 * 109.27941 * 57.65461 * 5 4 2 9 9 N 1.46847 * 109.52098 * 300.82001 * 8 5 4 10 10 C 1.46901 * 110.99755 * 185.83564 * 9 8 5 11 11 C 1.50702 * 109.47003 * 164.02453 * 10 9 8 12 12 C 1.38252 * 120.00151 * 99.29302 * 11 10 9 13 13 C 1.38213 * 120.00351 * 179.97438 * 12 11 10 14 14 C 1.38255 * 119.99965 * 359.97438 * 13 12 11 15 15 C 1.38215 * 120.00056 * 359.80805 * 14 13 12 16 16 C 1.38212 * 119.99821 * 279.32027 * 11 10 9 17 17 C 1.50694 * 120.00451 * 359.97403 * 16 11 10 18 18 N 1.46901 * 109.46917 * 81.55680 * 17 16 11 19 19 C 1.46900 * 110.99988 * 174.62215 * 18 17 16 20 20 C 1.50700 * 109.47061 * 180.02562 * 19 18 17 21 21 H 1.08008 * 120.00130 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00356 * 179.97438 * 20 19 18 23 23 N 1.31524 * 119.99734 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00478 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46997 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47349 * 120.00013 * 24 22 20 27 27 H 1.48503 * 109.47043 * 240.00428 * 24 22 20 28 28 C 1.46849 * 111.19986 * 61.74295 * 9 8 5 29 29 H 1.09002 * 109.47325 * 305.21726 * 1 2 3 30 30 H 1.08999 * 109.47155 * 65.21257 * 1 2 3 31 31 H 1.09003 * 109.47732 * 185.21530 * 1 2 3 32 32 H 1.08995 * 109.52218 * 302.42029 * 4 2 1 33 33 H 1.08998 * 109.57521 * 182.25592 * 4 2 1 34 34 H 1.09006 * 109.47248 * 300.18011 * 7 5 4 35 35 H 1.08996 * 109.46979 * 60.17483 * 7 5 4 36 36 H 1.08996 * 109.47124 * 180.18044 * 7 5 4 37 37 H 1.08995 * 109.46477 * 180.80425 * 8 5 4 38 38 H 1.08999 * 109.46313 * 60.83191 * 8 5 4 39 39 H 1.09002 * 109.47184 * 44.03263 * 10 9 8 40 40 H 1.08992 * 109.47674 * 284.02627 * 10 9 8 41 41 H 1.08003 * 119.99886 * 359.97438 * 12 11 10 42 42 H 1.07996 * 120.00450 * 179.97438 * 13 12 11 43 43 H 1.07998 * 120.00374 * 179.97438 * 14 13 12 44 44 H 1.07995 * 120.00579 * 180.22824 * 15 14 13 45 45 H 1.08995 * 109.47098 * 321.55630 * 17 16 11 46 46 H 1.09004 * 109.47675 * 201.55655 * 17 16 11 47 47 H 1.00898 * 111.00262 * 298.57398 * 18 17 16 48 48 H 1.08991 * 109.47535 * 60.00021 * 19 18 17 49 49 H 1.09005 * 109.46993 * 299.99358 * 19 18 17 50 50 H 0.96993 * 119.99969 * 180.02562 * 23 22 20 51 51 H 1.09003 * 109.46091 * 58.27285 * 28 9 8 52 52 H 1.09000 * 109.46503 * 178.24256 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7234 1.2490 5 6 1.5756 -2.1817 1.2111 6 1 0.4863 -2.2165 1.2298 7 6 2.1315 -2.9279 2.4256 8 6 2.0860 -2.8418 -0.0718 9 7 1.5689 -2.1137 -1.2375 10 6 1.9245 -2.7998 -2.4869 11 6 1.0721 -2.2700 -3.6111 12 6 1.5807 -1.3176 -4.4746 13 6 0.7992 -0.8321 -5.5059 14 6 -0.4911 -1.2992 -5.6744 15 6 -0.9981 -2.2546 -4.8139 16 6 -0.2183 -2.7358 -3.7785 17 6 -0.7728 -3.7739 -2.8373 18 7 -1.2419 -3.1199 -1.6084 19 6 -1.9052 -4.0832 -0.7196 20 6 -2.3724 -3.3773 0.5272 21 1 -2.1939 -2.3189 0.6475 22 6 -3.0275 -4.0825 1.5144 23 7 -3.2444 -5.3714 1.3681 24 14 -3.6059 -3.2076 3.0601 25 1 -3.2407 -1.7703 2.9815 26 1 -5.0802 -3.3384 3.1807 27 1 -2.9560 -3.8187 4.2473 28 6 2.0416 -0.7234 -1.2478 29 1 -0.3634 0.5926 0.8396 30 1 -0.3633 0.4308 -0.9330 31 1 -0.3635 -1.0234 0.0934 32 1 1.6435 -0.2372 2.1398 33 1 3.1303 -0.6892 1.2707 34 1 3.2208 -2.8915 2.4072 35 1 1.7677 -2.4573 3.3389 36 1 1.8022 -3.9665 2.3959 37 1 1.7443 -3.8761 -0.1088 38 1 3.1757 -2.8188 -0.0833 39 1 1.7535 -3.8704 -2.3748 40 1 2.9758 -2.6214 -2.7129 41 1 2.5888 -0.9530 -4.3432 42 1 1.1963 -0.0878 -6.1802 43 1 -1.1020 -0.9195 -6.4801 44 1 -2.0047 -2.6222 -4.9477 45 1 0.0071 -4.4942 -2.5905 46 1 -1.6058 -4.2897 -3.3150 47 1 -0.4829 -2.6538 -1.1343 48 1 -1.2029 -4.8717 -0.4496 49 1 -2.7624 -4.5199 -1.2322 50 1 -3.7056 -5.8675 2.0623 51 1 3.1316 -0.7104 -1.2538 52 1 1.6676 -0.2192 -2.1388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577858880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:02 Heat of formation + Delta-G solvation = 11.050098 kcal Electronic energy + Delta-G solvation = -28764.343756 eV Core-core repulsion = 25341.454961 eV Total energy + Delta-G solvation = -3422.888795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.97885 -38.68592 -35.17464 -34.55517 -32.84373 -32.55483 -30.99500 -30.67913 -27.04298 -26.55726 -26.31834 -26.06021 -24.07723 -22.64553 -21.69156 -21.46273 -21.03910 -19.84774 -18.43572 -16.57640 -16.04979 -15.86716 -15.64455 -15.07318 -14.71270 -14.48572 -14.26127 -14.19899 -13.83471 -13.64075 -13.36916 -13.13067 -12.98407 -12.73522 -12.54520 -12.19070 -12.10189 -11.91410 -11.74920 -11.62747 -11.31279 -11.23247 -11.11884 -11.09331 -10.81235 -10.68757 -10.62978 -10.55830 -10.38987 -10.19397 -10.01263 -9.85333 -9.72288 -9.05257 -8.58928 -8.42347 -8.33816 -8.07244 -6.98582 -5.94927 -3.94884 1.57659 1.66828 3.34284 3.42156 3.47082 3.85495 4.27259 4.50479 4.87939 4.90760 4.98815 5.08438 5.12506 5.19859 5.25291 5.32865 5.39131 5.41442 5.46057 5.59260 5.65889 5.67960 5.72954 5.78292 5.86336 5.89271 5.91083 5.97342 6.01782 6.04090 6.09283 6.10805 6.20801 6.22290 6.33663 6.41562 6.43770 6.44605 6.49140 6.61031 6.67553 6.73713 6.75933 7.03009 7.11111 7.23743 7.29140 7.32657 7.42181 7.60057 7.91347 8.26558 8.67736 8.97440 9.18692 9.69645 11.16394 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.005664 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.085189 B = 4942.355947 C = 6439.985839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.108 4.108 5 C -0.096 4.096 6 H 0.100 0.900 7 C -0.143 4.143 8 C 0.065 3.935 9 N -0.521 5.521 10 C 0.092 3.908 11 C -0.076 4.076 12 C -0.116 4.116 13 C -0.133 4.133 14 C -0.122 4.122 15 C -0.106 4.106 16 C -0.040 4.040 17 C 0.097 3.903 18 N -0.689 5.689 19 C 0.196 3.804 20 C -0.499 4.499 21 H 0.062 0.938 22 C 0.056 3.944 23 N -0.899 5.899 24 Si 0.890 3.110 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.286 1.286 28 C 0.064 3.936 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.027 0.973 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.022 0.978 46 H 0.064 0.936 47 H 0.358 0.642 48 H -0.020 1.020 49 H 0.021 0.979 50 H 0.258 0.742 51 H 0.025 0.975 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.462 8.172 -7.884 17.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.115 4.115 6 H 0.118 0.882 7 C -0.201 4.201 8 C -0.063 4.063 9 N -0.245 5.245 10 C -0.036 4.036 11 C -0.077 4.077 12 C -0.135 4.135 13 C -0.151 4.151 14 C -0.140 4.140 15 C -0.124 4.124 16 C -0.041 4.041 17 C -0.033 4.033 18 N -0.326 5.326 19 C 0.069 3.931 20 C -0.538 4.538 21 H 0.080 0.920 22 C -0.144 4.144 23 N -0.539 5.539 24 Si 0.718 3.282 25 H -0.196 1.196 26 H -0.212 1.212 27 H -0.212 1.212 28 C -0.064 4.064 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.045 0.955 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.039 0.961 46 H 0.082 0.918 47 H 0.183 0.817 48 H -0.002 1.002 49 H 0.039 0.961 50 H 0.068 0.932 51 H 0.044 0.956 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.309 8.239 -7.994 16.831 hybrid contribution 1.189 -0.148 1.091 1.621 sum 13.497 8.091 -6.903 17.184 Atomic orbital electron populations 1.21841 0.93436 1.04392 1.00447 1.21152 0.97653 0.97748 0.94002 0.91737 1.21663 0.99393 0.95784 0.97773 1.21266 1.03191 0.93843 0.93170 0.88182 1.21752 0.99741 1.00894 0.97710 1.22147 0.96210 0.98009 0.89932 1.61691 1.59683 1.02004 1.01135 1.21035 0.95557 0.98838 0.88121 1.19554 0.94706 0.97471 0.95979 1.20904 0.99442 0.97381 0.95751 1.20954 0.94767 1.00766 0.98612 1.21071 0.95671 0.97732 0.99528 1.21063 0.99498 0.97100 0.94785 1.19874 0.92482 0.97000 0.94722 1.20781 0.97209 0.92662 0.92637 1.60782 1.34165 1.31122 1.06562 1.19500 0.93073 0.89892 0.90665 1.21187 1.35865 0.95480 1.01277 0.91984 1.24943 0.96318 0.94766 0.98417 1.69977 1.42758 1.07016 1.34193 0.86566 0.78428 0.79989 0.83232 1.19575 1.21168 1.21225 1.22130 0.96188 0.89129 0.98956 0.93946 0.93217 0.89476 0.91979 0.92989 0.93605 0.92607 0.92251 0.90679 0.95506 0.89895 0.94354 0.86973 0.86800 0.86626 0.86097 0.96057 0.91751 0.81677 1.00219 0.96103 0.93199 0.95642 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.81 37.16 0.33 -1.95 16 2 C -0.09 -1.14 3.21 -90.54 -0.29 -1.43 16 3 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.11 -1.40 4.79 -26.60 -0.13 -1.53 16 5 C -0.10 -1.42 2.53 -90.53 -0.23 -1.65 16 6 H 0.10 1.86 6.47 -51.93 -0.34 1.52 16 7 C -0.14 -1.94 9.20 37.16 0.34 -1.60 16 8 C 0.06 0.92 4.68 -3.83 -0.02 0.91 16 9 N -0.52 -7.49 1.51 -236.12 -0.36 -7.85 16 10 C 0.09 1.25 4.49 -4.97 -0.02 1.23 16 11 C -0.08 -1.10 4.81 -104.63 -0.50 -1.60 16 12 C -0.12 -1.46 8.62 -39.59 -0.34 -1.81 16 13 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 14 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 15 C -0.11 -1.58 9.67 -39.58 -0.38 -1.97 16 16 C -0.04 -0.64 5.44 -104.62 -0.57 -1.21 16 17 C 0.10 1.81 5.28 -4.98 -0.03 1.79 16 18 N -0.69 -15.14 6.45 -116.34 -0.75 -15.89 16 19 C 0.20 5.15 5.43 -4.98 -0.03 5.12 16 20 C -0.50 -13.94 9.32 -34.44 -0.32 -14.26 16 21 H 0.06 1.72 7.47 -52.48 -0.39 1.33 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 23 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 24 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.06 0.83 4.72 -3.83 -0.02 0.81 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.65 4.24 -51.93 -0.22 1.43 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 38 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 1.19 6.21 -51.93 -0.32 0.87 16 40 H 0.04 0.46 7.92 -51.93 -0.41 0.05 16 41 H 0.11 1.20 8.04 -52.48 -0.42 0.78 16 42 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.12 1.74 8.05 -52.49 -0.42 1.32 16 45 H 0.02 0.40 6.46 -51.93 -0.34 0.06 16 46 H 0.06 1.22 8.00 -51.93 -0.42 0.80 16 47 H 0.36 7.40 4.61 -39.29 -0.18 7.22 16 48 H -0.02 -0.56 8.14 -51.93 -0.42 -0.98 16 49 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 51 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 52 H 0.08 1.02 6.52 -51.93 -0.34 0.69 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -29.51 392.72 -11.84 -41.35 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -9.26 Total: 7.49 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -3.10 Total: -21.62 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.37 Total: -49.79 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.51 -11.84 -41.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577858880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.398 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds