Wall clock time and date at job start Tue Mar 31 2020 11:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.50671 * 2 1 4 4 C 1.53121 * 109.50122 * 120.07708 * 2 1 3 5 5 C 1.53127 * 109.15974 * 62.32407 * 4 2 1 6 6 H 1.08998 * 109.49992 * 297.71269 * 5 4 2 7 7 C 1.53002 * 109.53420 * 177.61456 * 5 4 2 8 8 C 1.53037 * 109.27941 * 57.65461 * 5 4 2 9 9 N 1.46847 * 109.52098 * 300.82001 * 8 5 4 10 10 C 1.46901 * 110.99755 * 185.83564 * 9 8 5 11 11 C 1.50702 * 109.47003 * 164.02453 * 10 9 8 12 12 C 1.38252 * 120.00151 * 99.29302 * 11 10 9 13 13 C 1.38213 * 120.00351 * 179.97438 * 12 11 10 14 14 C 1.38255 * 119.99965 * 359.97438 * 13 12 11 15 15 C 1.38215 * 120.00056 * 359.80805 * 14 13 12 16 16 C 1.38212 * 119.99821 * 279.32027 * 11 10 9 17 17 C 1.50694 * 120.00451 * 359.97403 * 16 11 10 18 18 N 1.46901 * 109.46917 * 81.55680 * 17 16 11 19 19 C 1.46900 * 110.99988 * 174.62215 * 18 17 16 20 20 C 1.50700 * 109.47061 * 180.02562 * 19 18 17 21 21 H 1.08008 * 120.00130 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00356 * 179.97438 * 20 19 18 23 23 N 1.31524 * 119.99734 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00478 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46997 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47349 * 120.00013 * 24 22 20 27 27 H 1.48503 * 109.47043 * 240.00428 * 24 22 20 28 28 C 1.46849 * 111.19986 * 61.74295 * 9 8 5 29 29 H 1.09002 * 109.47325 * 305.21726 * 1 2 3 30 30 H 1.08999 * 109.47155 * 65.21257 * 1 2 3 31 31 H 1.09003 * 109.47732 * 185.21530 * 1 2 3 32 32 H 1.08995 * 109.52218 * 302.42029 * 4 2 1 33 33 H 1.08998 * 109.57521 * 182.25592 * 4 2 1 34 34 H 1.09006 * 109.47248 * 300.18011 * 7 5 4 35 35 H 1.08996 * 109.46979 * 60.17483 * 7 5 4 36 36 H 1.08996 * 109.47124 * 180.18044 * 7 5 4 37 37 H 1.08995 * 109.46477 * 180.80425 * 8 5 4 38 38 H 1.08999 * 109.46313 * 60.83191 * 8 5 4 39 39 H 1.09002 * 109.47184 * 44.03263 * 10 9 8 40 40 H 1.08992 * 109.47674 * 284.02627 * 10 9 8 41 41 H 1.08003 * 119.99886 * 359.97438 * 12 11 10 42 42 H 1.07996 * 120.00450 * 179.97438 * 13 12 11 43 43 H 1.07998 * 120.00374 * 179.97438 * 14 13 12 44 44 H 1.07995 * 120.00579 * 180.22824 * 15 14 13 45 45 H 1.08995 * 109.47098 * 321.55630 * 17 16 11 46 46 H 1.09004 * 109.47675 * 201.55655 * 17 16 11 47 47 H 1.00898 * 111.00262 * 298.57398 * 18 17 16 48 48 H 1.08991 * 109.47535 * 60.00021 * 19 18 17 49 49 H 1.09005 * 109.46993 * 299.99358 * 19 18 17 50 50 H 0.96993 * 119.99969 * 180.02562 * 23 22 20 51 51 H 1.09003 * 109.46091 * 58.27285 * 28 9 8 52 52 H 1.09000 * 109.46503 * 178.24256 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7234 1.2490 5 6 1.5756 -2.1817 1.2111 6 1 0.4863 -2.2165 1.2298 7 6 2.1315 -2.9279 2.4256 8 6 2.0860 -2.8418 -0.0718 9 7 1.5689 -2.1137 -1.2375 10 6 1.9245 -2.7998 -2.4869 11 6 1.0721 -2.2700 -3.6111 12 6 1.5807 -1.3176 -4.4746 13 6 0.7992 -0.8321 -5.5059 14 6 -0.4911 -1.2992 -5.6744 15 6 -0.9981 -2.2546 -4.8139 16 6 -0.2183 -2.7358 -3.7785 17 6 -0.7728 -3.7739 -2.8373 18 7 -1.2419 -3.1199 -1.6084 19 6 -1.9052 -4.0832 -0.7196 20 6 -2.3724 -3.3773 0.5272 21 1 -2.1939 -2.3189 0.6475 22 6 -3.0275 -4.0825 1.5144 23 7 -3.2444 -5.3714 1.3681 24 14 -3.6059 -3.2076 3.0601 25 1 -3.2407 -1.7703 2.9815 26 1 -5.0802 -3.3384 3.1807 27 1 -2.9560 -3.8187 4.2473 28 6 2.0416 -0.7234 -1.2478 29 1 -0.3634 0.5926 0.8396 30 1 -0.3633 0.4308 -0.9330 31 1 -0.3635 -1.0234 0.0934 32 1 1.6435 -0.2372 2.1398 33 1 3.1303 -0.6892 1.2707 34 1 3.2208 -2.8915 2.4072 35 1 1.7677 -2.4573 3.3389 36 1 1.8022 -3.9665 2.3959 37 1 1.7443 -3.8761 -0.1088 38 1 3.1757 -2.8188 -0.0833 39 1 1.7535 -3.8704 -2.3748 40 1 2.9758 -2.6214 -2.7129 41 1 2.5888 -0.9530 -4.3432 42 1 1.1963 -0.0878 -6.1802 43 1 -1.1020 -0.9195 -6.4801 44 1 -2.0047 -2.6222 -4.9477 45 1 0.0071 -4.4942 -2.5905 46 1 -1.6058 -4.2897 -3.3150 47 1 -0.4829 -2.6538 -1.1343 48 1 -1.2029 -4.8717 -0.4496 49 1 -2.7624 -4.5199 -1.2322 50 1 -3.7056 -5.8675 2.0623 51 1 3.1316 -0.7104 -1.2538 52 1 1.6676 -0.2192 -2.1388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577858880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:01 Heat of formation + Delta-G solvation = -3.519871 kcal Electronic energy + Delta-G solvation = -28764.975557 eV Core-core repulsion = 25341.454961 eV Total energy + Delta-G solvation = -3423.520597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09550 -39.78299 -36.87912 -35.73578 -34.57950 -33.95525 -32.24971 -31.97796 -28.84217 -27.73277 -27.47954 -27.19457 -25.74195 -23.73807 -23.36218 -22.80866 -22.34835 -21.00735 -19.53165 -18.57327 -17.26540 -17.08818 -16.89660 -16.56608 -16.20468 -15.76795 -15.60368 -15.37852 -15.17333 -14.93749 -14.76000 -14.57116 -14.35425 -13.92380 -13.79916 -13.66022 -13.38176 -13.20055 -13.09901 -12.90067 -12.77793 -12.72148 -12.65901 -12.55497 -12.39291 -12.25955 -12.00915 -11.77581 -11.75977 -11.57424 -11.32588 -11.19569 -11.06514 -10.91232 -10.62327 -9.65246 -9.50926 -9.17802 -8.81651 -8.17266 -6.25907 0.51510 0.58334 1.38789 1.39852 1.53466 2.41622 2.78818 3.15738 3.18244 3.77034 3.82452 3.92290 3.95996 3.99794 4.09802 4.17647 4.22201 4.28788 4.36508 4.39971 4.48481 4.54768 4.57137 4.61542 4.70352 4.74154 4.78475 4.82201 4.85997 4.88131 4.92508 4.95872 4.97475 5.14114 5.15647 5.21298 5.24720 5.25279 5.27280 5.34861 5.35675 5.48672 5.53561 5.65101 5.67712 5.70308 5.82294 5.88394 6.10320 6.16673 6.24331 6.27551 6.63888 6.87847 7.25396 7.45600 8.94833 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.005664 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.085189 B = 4942.355947 C = 6439.985839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 H 0.091 0.909 4 C -0.101 4.101 5 C -0.096 4.096 6 H 0.053 0.947 7 C -0.140 4.140 8 C 0.071 3.929 9 N -0.541 5.541 10 C 0.094 3.906 11 C -0.081 4.081 12 C -0.112 4.112 13 C -0.124 4.124 14 C -0.122 4.122 15 C -0.124 4.124 16 C -0.067 4.067 17 C 0.101 3.899 18 N -0.688 5.688 19 C 0.214 3.786 20 C -0.511 4.511 21 H 0.060 0.940 22 C 0.005 3.995 23 N -0.935 5.935 24 Si 0.960 3.040 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.277 1.277 28 C 0.067 3.933 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.114 0.886 45 H 0.017 0.983 46 H 0.050 0.950 47 H 0.368 0.632 48 H -0.050 1.050 49 H -0.012 1.012 50 H 0.262 0.738 51 H 0.049 0.951 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.984 11.271 -8.400 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.109 0.891 4 C -0.139 4.139 5 C -0.115 4.115 6 H 0.071 0.929 7 C -0.198 4.198 8 C -0.057 4.057 9 N -0.266 5.266 10 C -0.033 4.033 11 C -0.082 4.082 12 C -0.131 4.131 13 C -0.141 4.141 14 C -0.140 4.140 15 C -0.142 4.142 16 C -0.068 4.068 17 C -0.028 4.028 18 N -0.327 5.327 19 C 0.086 3.914 20 C -0.549 4.549 21 H 0.078 0.922 22 C -0.193 4.193 23 N -0.576 5.576 24 Si 0.785 3.215 25 H -0.186 1.186 26 H -0.206 1.206 27 H -0.202 1.202 28 C -0.060 4.060 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.159 0.841 44 H 0.132 0.868 45 H 0.035 0.965 46 H 0.069 0.931 47 H 0.194 0.806 48 H -0.032 1.032 49 H 0.007 0.993 50 H 0.071 0.929 51 H 0.067 0.933 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.846 11.352 -8.525 20.541 hybrid contribution 0.405 -1.119 1.150 1.655 sum 15.251 10.233 -7.375 19.792 Atomic orbital electron populations 1.21755 0.95972 1.01897 1.00068 1.21164 0.95317 0.99307 0.94347 0.89118 1.21612 1.00753 0.93785 0.97723 1.21187 1.00395 0.95936 0.93955 0.92872 1.21724 1.01331 0.99432 0.97271 1.22021 0.97338 0.96413 0.89917 1.61587 1.60736 1.03016 1.01271 1.21004 0.96847 0.97707 0.87760 1.19657 0.93902 0.97987 0.96655 1.21207 1.00707 0.96185 0.94958 1.21393 0.94022 1.00377 0.98353 1.21364 0.96566 0.96645 0.99397 1.21154 0.99398 0.98252 0.95416 1.19663 0.94029 0.97795 0.95268 1.20714 0.96620 0.93725 0.91774 1.60708 1.35075 1.30052 1.06836 1.19115 0.91520 0.89790 0.90940 1.21395 1.36044 0.95419 1.02033 0.92202 1.25822 0.96206 0.95435 1.01787 1.70108 1.43438 1.08614 1.35486 0.85467 0.77922 0.79130 0.78989 1.18639 1.20586 1.20235 1.22139 0.97448 0.87788 0.98655 0.93831 0.93891 0.93101 0.91921 0.90487 0.90946 0.92433 0.94317 0.93621 0.93095 0.91827 0.91739 0.84119 0.83331 0.84117 0.86814 0.96511 0.93113 0.80573 1.03235 0.99348 0.92891 0.93279 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 8.81 71.98 0.63 -3.76 16 2 C -0.08 -1.98 3.21 -10.74 -0.03 -2.01 16 3 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.10 -2.39 4.79 30.68 0.15 -2.24 16 5 C -0.10 -2.85 2.53 -10.74 -0.03 -2.88 16 6 H 0.05 2.09 6.47 -2.39 -0.02 2.08 16 7 C -0.14 -3.76 9.20 71.98 0.66 -3.10 16 8 C 0.07 2.02 4.68 86.33 0.40 2.43 16 9 N -0.54 -15.29 1.51 -900.93 -1.36 -16.65 16 10 C 0.09 2.49 4.49 85.56 0.38 2.87 16 11 C -0.08 -2.24 4.81 -19.87 -0.10 -2.34 16 12 C -0.11 -2.44 8.62 22.27 0.19 -2.25 16 13 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 14 C -0.12 -2.83 10.05 22.27 0.22 -2.61 16 15 C -0.12 -3.70 9.67 22.27 0.22 -3.49 16 16 C -0.07 -2.21 5.44 -19.86 -0.11 -2.32 16 17 C 0.10 4.09 5.28 85.55 0.45 4.54 16 18 N -0.69 -32.44 6.45 -522.00 -3.37 -35.81 16 19 C 0.21 12.20 5.43 85.56 0.46 12.66 16 20 C -0.51 -30.03 9.32 25.60 0.24 -29.79 16 21 H 0.06 3.49 7.47 -2.91 -0.02 3.46 16 22 C 0.01 0.30 5.46 84.65 0.46 0.76 16 23 N -0.94 -58.01 13.29 21.45 0.28 -57.73 16 24 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 25 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 28 C 0.07 1.55 4.72 86.33 0.41 1.96 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 2.00 4.24 -2.39 -0.01 1.98 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.54 8.14 -2.38 -0.02 1.53 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.54 7.96 -2.39 -0.02 1.52 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.91 6.21 -2.39 -0.01 1.89 16 40 H 0.06 1.36 7.92 -2.39 -0.02 1.34 16 41 H 0.14 2.28 8.04 -2.91 -0.02 2.25 16 42 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 43 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.11 3.43 8.05 -2.91 -0.02 3.41 16 45 H 0.02 0.69 6.46 -2.39 -0.02 0.67 16 46 H 0.05 2.12 8.00 -2.39 -0.02 2.10 16 47 H 0.37 16.16 4.61 -89.70 -0.41 15.75 16 48 H -0.05 -3.07 8.14 -2.39 -0.02 -3.09 16 49 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 50 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 51 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.07 1.77 6.52 -2.39 -0.02 1.76 16 Total: -1.00 -67.96 392.72 2.89 -65.07 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.46 Total: 31.35 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 4.84 Total: -33.82 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.44 Total: -110.18 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -67.96 2.89 -65.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577858880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.546 kcal (2) G-P(sol) polarization free energy of solvation -67.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds