Wall clock time and date at job start Tue Mar 31 2020 11:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.53851 * 2 1 4 4 C 1.53124 * 109.50391 * 239.90612 * 2 1 3 5 5 C 1.53113 * 109.16245 * 182.40293 * 4 2 1 6 6 H 1.08998 * 109.50262 * 177.59134 * 5 4 2 7 7 C 1.53000 * 109.53783 * 297.69170 * 5 4 2 8 8 C 1.53044 * 109.27925 * 57.65309 * 5 4 2 9 9 N 1.46843 * 109.52241 * 300.82336 * 8 5 4 10 10 C 1.46905 * 111.00104 * 185.84141 * 9 8 5 11 11 C 1.50694 * 109.47372 * 162.01600 * 10 9 8 12 12 C 1.38260 * 119.99939 * 352.66778 * 11 10 9 13 13 C 1.38212 * 119.99913 * 179.97438 * 12 11 10 14 14 C 1.38257 * 120.00273 * 359.97438 * 13 12 11 15 15 C 1.38212 * 119.99782 * 0.02562 * 14 13 12 16 16 C 1.38203 * 120.00202 * 172.65031 * 11 10 9 17 17 C 1.50705 * 119.99823 * 359.72013 * 16 11 10 18 18 N 1.46909 * 109.47082 * 80.41828 * 17 16 11 19 19 C 1.46895 * 110.99772 * 180.02562 * 18 17 16 20 20 C 1.50705 * 109.46979 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99447 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00211 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99656 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00268 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46824 * 60.00050 * 24 22 20 26 26 H 1.48495 * 109.47249 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46783 * 300.00387 * 24 22 20 28 28 C 1.46850 * 111.20192 * 61.73790 * 9 8 5 29 29 H 1.09002 * 109.47298 * 180.10120 * 1 2 3 30 30 H 1.09001 * 109.47120 * 300.09633 * 1 2 3 31 31 H 1.08991 * 109.47412 * 60.09559 * 1 2 3 32 32 H 1.09000 * 109.52255 * 62.49264 * 4 2 1 33 33 H 1.09002 * 109.56851 * 302.34115 * 4 2 1 34 34 H 1.09001 * 109.47028 * 179.82195 * 7 5 4 35 35 H 1.08996 * 109.47075 * 299.82607 * 7 5 4 36 36 H 1.08996 * 109.46823 * 59.82433 * 7 5 4 37 37 H 1.08997 * 109.46484 * 180.80229 * 8 5 4 38 38 H 1.09003 * 109.45090 * 60.83163 * 8 5 4 39 39 H 1.08993 * 109.46955 * 42.01127 * 10 9 8 40 40 H 1.09005 * 109.46623 * 282.01700 * 10 9 8 41 41 H 1.08003 * 120.00041 * 359.97438 * 12 11 10 42 42 H 1.08001 * 119.99655 * 179.97438 * 13 12 11 43 43 H 1.07997 * 120.00168 * 179.97438 * 14 13 12 44 44 H 1.08003 * 120.00009 * 179.97438 * 15 14 13 45 45 H 1.09003 * 109.47191 * 200.41669 * 17 16 11 46 46 H 1.09000 * 109.47298 * 320.41633 * 17 16 11 47 47 H 1.00900 * 110.99546 * 303.95186 * 18 17 16 48 48 H 1.08999 * 109.47418 * 299.99416 * 19 18 17 49 49 H 1.08998 * 109.47640 * 60.00183 * 19 18 17 50 50 H 0.97007 * 119.99913 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.45806 * 58.27600 * 28 9 8 52 52 H 1.09000 * 109.45870 * 178.24600 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2488 5 6 3.5711 -0.7718 -1.2109 6 1 3.9394 -1.3233 -2.0759 7 6 4.1286 0.6527 -1.2381 8 6 4.0229 -1.4730 0.0723 9 7 3.5092 -0.7422 1.2378 10 6 4.0373 -1.3059 2.4873 11 6 3.8671 -0.3054 3.6013 12 6 3.4263 0.9744 3.3196 13 6 3.2696 1.8919 4.3413 14 6 3.5532 1.5297 5.6452 15 6 3.9939 0.2504 5.9267 16 6 4.1512 -0.6672 4.9045 17 6 4.6253 -2.0642 5.2124 18 7 6.0607 -2.1703 4.9179 19 6 6.5587 -3.5218 5.2061 20 6 8.0309 -3.5923 4.8920 21 1 8.5452 -2.7201 4.5162 22 6 8.7215 -4.7698 5.0853 23 7 8.0953 -5.8318 5.5433 24 14 10.5466 -4.8570 4.6965 25 1 11.2781 -3.8708 5.5317 26 1 11.0503 -6.2229 4.9890 27 1 10.7621 -4.5461 3.2606 28 6 2.0409 -0.7235 1.2480 29 1 -0.3634 -1.0277 0.0018 30 1 -0.3633 0.5153 0.8891 31 1 -0.3634 0.5123 -0.8907 32 1 1.7155 -0.1870 -2.1398 33 1 1.6452 -1.7390 -1.2702 34 1 5.2177 0.6173 -1.2078 35 1 3.8065 1.1515 -2.1521 36 1 3.7589 1.2040 -0.3736 37 1 5.1120 -1.4962 0.1092 38 1 3.6373 -2.4924 0.0839 39 1 5.0956 -1.5354 2.3636 40 1 3.4939 -2.2185 2.7324 41 1 3.2043 1.2572 2.3012 42 1 2.9257 2.8917 4.1212 43 1 3.4312 2.2468 6.4435 44 1 4.2158 -0.0324 6.9452 45 1 4.4537 -2.2821 6.2665 46 1 4.0749 -2.7780 4.5995 47 1 6.2538 -1.9102 3.9623 48 1 6.4004 -3.7503 6.2601 49 1 6.0217 -4.2455 4.5928 50 1 8.5811 -6.6604 5.6790 51 1 1.6648 -1.7465 1.2543 52 1 1.6906 -0.2023 2.1389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577858883.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:04 Heat of formation + Delta-G solvation = 9.675842 kcal Electronic energy + Delta-G solvation = -27206.860633 eV Core-core repulsion = 23783.912246 eV Total energy + Delta-G solvation = -3422.948387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14960 -38.87532 -35.36636 -34.84835 -33.32614 -32.70806 -30.95138 -30.64861 -27.18125 -26.95214 -26.82041 -26.20644 -24.14422 -23.07346 -21.76046 -21.46861 -21.07398 -20.20854 -18.83582 -16.67776 -16.19304 -16.08543 -15.50138 -15.27138 -14.78252 -14.63492 -14.48514 -14.37577 -14.14127 -14.02299 -13.61584 -13.27254 -13.08756 -12.93903 -12.80755 -12.57235 -12.27010 -12.18064 -12.08389 -11.75261 -11.57942 -11.56490 -11.36245 -11.34239 -11.10667 -10.88564 -10.80665 -10.70497 -10.61673 -10.48452 -10.36072 -10.16201 -9.91980 -9.22280 -8.52443 -8.46020 -8.40094 -8.26694 -7.29557 -6.04018 -4.06116 1.60698 1.70988 3.33420 3.37154 3.40671 3.77097 4.01713 4.43372 4.50850 4.61425 4.66823 4.88347 5.02908 5.10560 5.12304 5.23511 5.26811 5.29770 5.31855 5.34539 5.39305 5.44328 5.50844 5.53960 5.55810 5.58120 5.65002 5.68491 5.75153 5.77136 5.81262 5.87617 5.89810 5.94497 6.01883 6.06229 6.12865 6.15271 6.18272 6.35056 6.37531 6.40995 6.69725 6.77240 6.91917 7.07806 7.13856 7.21660 7.30813 7.39295 7.77082 8.10981 8.37356 8.58594 9.02877 9.58872 11.06968 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011597 B = 0.003511 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.772244 B = 7973.466007 C = 9501.245659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.081 0.919 4 C -0.111 4.111 5 C -0.088 4.088 6 H 0.070 0.930 7 C -0.139 4.139 8 C 0.058 3.942 9 N -0.530 5.530 10 C 0.093 3.907 11 C -0.077 4.077 12 C -0.101 4.101 13 C -0.135 4.135 14 C -0.126 4.126 15 C -0.105 4.105 16 C -0.065 4.065 17 C 0.092 3.908 18 N -0.681 5.681 19 C 0.194 3.806 20 C -0.514 4.514 21 H 0.062 0.938 22 C 0.056 3.944 23 N -0.898 5.898 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.277 1.277 28 C 0.055 3.945 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.071 0.929 46 H 0.027 0.973 47 H 0.327 0.673 48 H 0.028 0.972 49 H -0.015 1.015 50 H 0.262 0.738 51 H 0.031 0.969 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.762 13.572 -11.454 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.099 0.901 4 C -0.149 4.149 5 C -0.107 4.107 6 H 0.089 0.911 7 C -0.196 4.196 8 C -0.070 4.070 9 N -0.254 5.254 10 C -0.034 4.034 11 C -0.078 4.078 12 C -0.119 4.119 13 C -0.153 4.153 14 C -0.144 4.144 15 C -0.123 4.123 16 C -0.066 4.066 17 C -0.037 4.037 18 N -0.312 5.312 19 C 0.068 3.932 20 C -0.553 4.553 21 H 0.080 0.920 22 C -0.145 4.145 23 N -0.538 5.538 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.073 4.073 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.150 0.850 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.090 0.910 46 H 0.045 0.955 47 H 0.144 0.856 48 H 0.047 0.953 49 H 0.003 0.997 50 H 0.071 0.929 51 H 0.049 0.951 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.358 14.072 -10.819 23.472 hybrid contribution 0.391 -1.591 -0.715 1.788 sum -14.967 12.481 -11.534 22.646 Atomic orbital electron populations 1.21799 0.95230 1.01723 1.01711 1.21193 0.94820 1.00507 0.94293 0.90107 1.21682 0.95249 1.00280 0.97648 1.21153 0.95268 0.97471 0.96781 0.91116 1.21751 1.00625 0.95735 1.01507 1.22139 1.00309 0.94664 0.89851 1.61779 1.07729 1.54058 1.01838 1.20991 1.00855 0.94225 0.87327 1.19604 1.00037 0.95129 0.93046 1.21058 0.98877 0.92514 0.99463 1.21076 1.01914 0.99171 0.93143 1.21069 1.00438 0.96318 0.96589 1.20974 0.99219 0.93141 0.99007 1.19815 0.97805 0.96521 0.92459 1.20887 0.90949 0.90911 1.00937 1.60771 1.10625 1.31102 1.28672 1.19574 0.94889 0.82267 0.96501 1.21140 0.93883 0.96693 1.43582 0.92000 1.24983 0.98661 0.95567 0.95294 1.69957 1.36379 1.01640 1.45799 0.86541 0.84950 0.76978 0.78833 1.20107 1.21341 1.20244 1.22262 0.87445 0.99014 0.98567 0.92896 0.92566 0.92603 0.91989 0.92403 0.92959 0.93722 0.91183 0.90332 0.94898 0.89191 0.93392 0.84980 0.86850 0.86741 0.86201 0.91016 0.95545 0.85551 0.95345 0.99682 0.92854 0.95119 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.20 37.16 0.34 -0.75 16 2 C -0.09 -0.77 2.53 -90.54 -0.23 -1.00 16 3 H 0.08 0.72 6.58 -51.93 -0.34 0.38 16 4 C -0.11 -0.93 4.79 -26.61 -0.13 -1.06 16 5 C -0.09 -0.81 3.21 -90.54 -0.29 -1.10 16 6 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 7 C -0.14 -1.27 8.76 37.16 0.33 -0.94 16 8 C 0.06 0.64 4.87 -3.83 -0.02 0.62 16 9 N -0.53 -6.11 2.78 -236.11 -0.66 -6.76 16 10 C 0.09 1.29 4.24 -4.98 -0.02 1.27 16 11 C -0.08 -1.12 5.52 -104.63 -0.58 -1.69 16 12 C -0.10 -1.32 7.96 -39.58 -0.32 -1.63 16 13 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 14 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 15 C -0.10 -1.55 9.67 -39.58 -0.38 -1.94 16 16 C -0.07 -1.04 5.39 -104.62 -0.56 -1.60 16 17 C 0.09 1.69 5.27 -4.97 -0.03 1.66 16 18 N -0.68 -14.83 6.48 -116.33 -0.75 -15.58 16 19 C 0.19 5.11 5.44 -4.98 -0.03 5.08 16 20 C -0.51 -14.67 9.32 -34.44 -0.32 -14.99 16 21 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 24 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 C 0.05 0.57 3.88 -3.83 -0.01 0.56 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.69 6.01 -51.93 -0.31 0.38 16 37 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 1.36 6.47 -51.93 -0.34 1.03 16 40 H 0.05 0.70 7.05 -51.93 -0.37 0.33 16 41 H 0.13 1.59 6.27 -52.48 -0.33 1.26 16 42 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 44 H 0.12 1.69 8.04 -52.48 -0.42 1.27 16 45 H 0.07 1.32 8.01 -51.93 -0.42 0.90 16 46 H 0.03 0.48 6.84 -51.93 -0.35 0.13 16 47 H 0.33 6.88 7.13 -39.29 -0.28 6.60 16 48 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 49 H -0.01 -0.40 8.14 -51.93 -0.42 -0.83 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 52 H 0.08 0.87 6.21 -51.93 -0.32 0.55 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -29.56 395.49 -12.23 -41.79 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -9.36 Total: 4.05 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -3.14 Total: -20.08 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.67 Total: -48.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.56 -12.23 -41.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577858883.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.463 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds