Wall clock time and date at job start Tue Mar 31 2020 11:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.53851 * 2 1 4 4 C 1.53124 * 109.50391 * 239.90612 * 2 1 3 5 5 C 1.53113 * 109.16245 * 182.40293 * 4 2 1 6 6 H 1.08998 * 109.50262 * 177.59134 * 5 4 2 7 7 C 1.53000 * 109.53783 * 297.69170 * 5 4 2 8 8 C 1.53044 * 109.27925 * 57.65309 * 5 4 2 9 9 N 1.46843 * 109.52241 * 300.82336 * 8 5 4 10 10 C 1.46905 * 111.00104 * 185.84141 * 9 8 5 11 11 C 1.50694 * 109.47372 * 162.01600 * 10 9 8 12 12 C 1.38260 * 119.99939 * 352.66778 * 11 10 9 13 13 C 1.38212 * 119.99913 * 179.97438 * 12 11 10 14 14 C 1.38257 * 120.00273 * 359.97438 * 13 12 11 15 15 C 1.38212 * 119.99782 * 0.02562 * 14 13 12 16 16 C 1.38203 * 120.00202 * 172.65031 * 11 10 9 17 17 C 1.50705 * 119.99823 * 359.72013 * 16 11 10 18 18 N 1.46909 * 109.47082 * 80.41828 * 17 16 11 19 19 C 1.46895 * 110.99772 * 180.02562 * 18 17 16 20 20 C 1.50705 * 109.46979 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99447 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00211 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99656 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00268 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46824 * 60.00050 * 24 22 20 26 26 H 1.48495 * 109.47249 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46783 * 300.00387 * 24 22 20 28 28 C 1.46850 * 111.20192 * 61.73790 * 9 8 5 29 29 H 1.09002 * 109.47298 * 180.10120 * 1 2 3 30 30 H 1.09001 * 109.47120 * 300.09633 * 1 2 3 31 31 H 1.08991 * 109.47412 * 60.09559 * 1 2 3 32 32 H 1.09000 * 109.52255 * 62.49264 * 4 2 1 33 33 H 1.09002 * 109.56851 * 302.34115 * 4 2 1 34 34 H 1.09001 * 109.47028 * 179.82195 * 7 5 4 35 35 H 1.08996 * 109.47075 * 299.82607 * 7 5 4 36 36 H 1.08996 * 109.46823 * 59.82433 * 7 5 4 37 37 H 1.08997 * 109.46484 * 180.80229 * 8 5 4 38 38 H 1.09003 * 109.45090 * 60.83163 * 8 5 4 39 39 H 1.08993 * 109.46955 * 42.01127 * 10 9 8 40 40 H 1.09005 * 109.46623 * 282.01700 * 10 9 8 41 41 H 1.08003 * 120.00041 * 359.97438 * 12 11 10 42 42 H 1.08001 * 119.99655 * 179.97438 * 13 12 11 43 43 H 1.07997 * 120.00168 * 179.97438 * 14 13 12 44 44 H 1.08003 * 120.00009 * 179.97438 * 15 14 13 45 45 H 1.09003 * 109.47191 * 200.41669 * 17 16 11 46 46 H 1.09000 * 109.47298 * 320.41633 * 17 16 11 47 47 H 1.00900 * 110.99546 * 303.95186 * 18 17 16 48 48 H 1.08999 * 109.47418 * 299.99416 * 19 18 17 49 49 H 1.08998 * 109.47640 * 60.00183 * 19 18 17 50 50 H 0.97007 * 119.99913 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.45806 * 58.27600 * 28 9 8 52 52 H 1.09000 * 109.45870 * 178.24600 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2488 5 6 3.5711 -0.7718 -1.2109 6 1 3.9394 -1.3233 -2.0759 7 6 4.1286 0.6527 -1.2381 8 6 4.0229 -1.4730 0.0723 9 7 3.5092 -0.7422 1.2378 10 6 4.0373 -1.3059 2.4873 11 6 3.8671 -0.3054 3.6013 12 6 3.4263 0.9744 3.3196 13 6 3.2696 1.8919 4.3413 14 6 3.5532 1.5297 5.6452 15 6 3.9939 0.2504 5.9267 16 6 4.1512 -0.6672 4.9045 17 6 4.6253 -2.0642 5.2124 18 7 6.0607 -2.1703 4.9179 19 6 6.5587 -3.5218 5.2061 20 6 8.0309 -3.5923 4.8920 21 1 8.5452 -2.7201 4.5162 22 6 8.7215 -4.7698 5.0853 23 7 8.0953 -5.8318 5.5433 24 14 10.5466 -4.8570 4.6965 25 1 11.2781 -3.8708 5.5317 26 1 11.0503 -6.2229 4.9890 27 1 10.7621 -4.5461 3.2606 28 6 2.0409 -0.7235 1.2480 29 1 -0.3634 -1.0277 0.0018 30 1 -0.3633 0.5153 0.8891 31 1 -0.3634 0.5123 -0.8907 32 1 1.7155 -0.1870 -2.1398 33 1 1.6452 -1.7390 -1.2702 34 1 5.2177 0.6173 -1.2078 35 1 3.8065 1.1515 -2.1521 36 1 3.7589 1.2040 -0.3736 37 1 5.1120 -1.4962 0.1092 38 1 3.6373 -2.4924 0.0839 39 1 5.0956 -1.5354 2.3636 40 1 3.4939 -2.2185 2.7324 41 1 3.2043 1.2572 2.3012 42 1 2.9257 2.8917 4.1212 43 1 3.4312 2.2468 6.4435 44 1 4.2158 -0.0324 6.9452 45 1 4.4537 -2.2821 6.2665 46 1 4.0749 -2.7780 4.5995 47 1 6.2538 -1.9102 3.9623 48 1 6.4004 -3.7503 6.2601 49 1 6.0217 -4.2455 4.5928 50 1 8.5811 -6.6604 5.6790 51 1 1.6648 -1.7465 1.2543 52 1 1.6906 -0.2023 2.1389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577858883.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:04 Heat of formation + Delta-G solvation = -5.459766 kcal Electronic energy + Delta-G solvation = -27207.516962 eV Core-core repulsion = 23783.912246 eV Total energy + Delta-G solvation = -3423.604717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13987 -39.87432 -37.08337 -35.79336 -34.72108 -34.07051 -32.37080 -31.76095 -28.92551 -27.83393 -27.61620 -27.22726 -25.78879 -24.02940 -23.47591 -22.64547 -22.08508 -21.36239 -19.62372 -18.65842 -17.36534 -17.21160 -16.80484 -16.46958 -16.31939 -15.71089 -15.58359 -15.49585 -15.29477 -15.14288 -14.87490 -14.61795 -14.23490 -14.08102 -13.89262 -13.73371 -13.49903 -13.35531 -13.15123 -13.01121 -12.83395 -12.72424 -12.63518 -12.55904 -12.39529 -12.31093 -12.13672 -11.89456 -11.78213 -11.69693 -11.38360 -11.31358 -11.15377 -10.94678 -10.68567 -9.62974 -9.49215 -9.31917 -9.13745 -8.25033 -6.36811 0.49180 0.60701 1.39365 1.43169 1.51251 2.38104 2.80652 2.89668 3.08031 3.68147 3.74826 3.80121 3.90239 3.94621 4.02502 4.10866 4.18532 4.24176 4.30854 4.35939 4.43618 4.48124 4.52615 4.59455 4.63380 4.69642 4.75748 4.76756 4.84200 4.88034 4.89474 4.95263 4.96920 5.03234 5.08519 5.17637 5.19201 5.20643 5.25567 5.28728 5.32543 5.42418 5.45965 5.57008 5.64717 5.68113 5.71517 5.79669 5.97219 6.08798 6.14127 6.22630 6.39024 6.64270 6.83244 7.34114 8.86275 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011597 B = 0.003511 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.772244 B = 7973.466007 C = 9501.245659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.084 0.916 4 C -0.108 4.108 5 C -0.084 4.084 6 H 0.078 0.922 7 C -0.134 4.134 8 C 0.055 3.945 9 N -0.523 5.523 10 C 0.100 3.900 11 C -0.083 4.083 12 C -0.099 4.099 13 C -0.126 4.126 14 C -0.124 4.124 15 C -0.118 4.118 16 C -0.088 4.088 17 C 0.099 3.901 18 N -0.678 5.678 19 C 0.210 3.790 20 C -0.537 4.537 21 H 0.063 0.937 22 C 0.003 3.997 23 N -0.933 5.933 24 Si 0.973 3.027 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.265 1.265 28 C 0.056 3.944 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.023 0.977 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.065 0.935 46 H 0.022 0.978 47 H 0.332 0.668 48 H 0.001 0.999 49 H -0.040 1.040 50 H 0.266 0.734 51 H 0.019 0.981 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.077 16.095 -12.809 26.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.103 0.897 4 C -0.146 4.146 5 C -0.103 4.103 6 H 0.096 0.904 7 C -0.192 4.192 8 C -0.073 4.073 9 N -0.246 5.246 10 C -0.028 4.028 11 C -0.084 4.084 12 C -0.117 4.117 13 C -0.144 4.144 14 C -0.141 4.141 15 C -0.137 4.137 16 C -0.088 4.088 17 C -0.030 4.030 18 N -0.309 5.309 19 C 0.082 3.918 20 C -0.575 4.575 21 H 0.081 0.919 22 C -0.195 4.195 23 N -0.573 5.573 24 Si 0.797 3.203 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.190 1.190 28 C -0.072 4.072 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.162 0.838 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.138 0.862 45 H 0.083 0.917 46 H 0.040 0.960 47 H 0.149 0.851 48 H 0.019 0.981 49 H -0.022 1.022 50 H 0.075 0.925 51 H 0.037 0.963 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.692 16.615 -12.182 25.898 hybrid contribution 0.407 -2.340 -0.275 2.391 sum -15.285 14.275 -12.457 24.343 Atomic orbital electron populations 1.21773 0.94089 1.01764 1.02503 1.21163 0.95671 1.00216 0.93135 0.89749 1.21673 0.94378 1.00314 0.98214 1.21146 0.96032 0.97489 0.95623 0.90353 1.21705 1.00046 0.95449 1.01960 1.22194 0.99696 0.94561 0.90815 1.61834 1.08518 1.53402 1.00882 1.20816 0.99535 0.93847 0.88627 1.19652 1.00367 0.96018 0.92377 1.21227 0.98247 0.91795 1.00468 1.21478 1.00145 1.00314 0.92467 1.21380 0.99198 0.95721 0.97849 1.21119 0.99785 0.94042 0.98726 1.19638 1.00109 0.95328 0.93766 1.20814 0.88752 0.93096 1.00328 1.60654 1.13238 1.28074 1.28951 1.19213 0.94390 0.83996 0.94164 1.21477 0.94903 0.97100 1.44064 0.91913 1.25948 1.03892 0.94968 0.94719 1.70088 1.38497 1.02282 1.46450 0.85383 0.78495 0.77294 0.79136 1.19321 1.20611 1.19024 1.22308 0.86476 0.98666 0.99705 0.93257 0.92328 0.91265 0.90334 0.92825 0.93795 0.92197 0.91823 0.91440 0.95904 0.91170 0.95013 0.83774 0.83546 0.83951 0.86227 0.91673 0.95977 0.85076 0.98094 1.02195 0.92535 0.96272 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.20 71.98 0.66 -1.17 16 2 C -0.08 -1.28 2.53 -10.74 -0.03 -1.31 16 3 H 0.08 1.29 6.58 -2.38 -0.02 1.27 16 4 C -0.11 -1.62 4.79 30.67 0.15 -1.48 16 5 C -0.08 -1.45 3.21 -10.74 -0.03 -1.48 16 6 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 7 C -0.13 -2.22 8.76 71.98 0.63 -1.59 16 8 C 0.06 1.24 4.87 86.33 0.42 1.66 16 9 N -0.52 -12.13 2.78 -900.92 -2.50 -14.63 16 10 C 0.10 2.88 4.24 85.55 0.36 3.25 16 11 C -0.08 -2.42 5.52 -19.87 -0.11 -2.53 16 12 C -0.10 -2.41 7.96 22.27 0.18 -2.24 16 13 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 14 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 15 C -0.12 -3.44 9.67 22.27 0.22 -3.22 16 16 C -0.09 -2.85 5.39 -19.87 -0.11 -2.96 16 17 C 0.10 3.82 5.27 85.56 0.45 4.27 16 18 N -0.68 -31.01 6.48 -521.96 -3.38 -34.39 16 19 C 0.21 11.65 5.44 85.56 0.47 12.12 16 20 C -0.54 -31.47 9.32 25.60 0.24 -31.23 16 21 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 22 C 0.00 0.18 5.46 84.65 0.46 0.64 16 23 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 24 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C 0.06 1.14 3.88 86.32 0.33 1.48 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 1.14 6.01 -2.39 -0.01 1.12 16 37 H 0.07 1.64 7.94 -2.39 -0.02 1.62 16 38 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 2.28 6.47 -2.39 -0.02 2.27 16 40 H 0.03 1.00 7.05 -2.38 -0.02 0.99 16 41 H 0.14 3.14 6.27 -2.91 -0.02 3.12 16 42 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 43 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.12 3.39 8.04 -2.91 -0.02 3.36 16 45 H 0.06 2.55 8.01 -2.39 -0.02 2.53 16 46 H 0.02 0.87 6.84 -2.39 -0.02 0.85 16 47 H 0.33 14.65 7.13 -89.69 -0.64 14.01 16 48 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 49 H -0.04 -2.34 8.14 -2.39 -0.02 -2.36 16 50 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 51 H 0.02 0.43 8.14 -2.38 -0.02 0.41 16 52 H 0.08 1.61 6.21 -2.39 -0.01 1.60 16 Total: -1.00 -64.72 395.49 1.40 -63.32 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.23 Total: 26.57 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 4.74 Total: -30.93 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -5.60 Total: -105.90 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.72 1.40 -63.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577858883.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.860 kcal (2) G-P(sol) polarization free energy of solvation -64.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds