Wall clock time and date at job start Tue Mar 31 2020 11:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47568 * 2 1 4 4 C 1.53004 * 109.46718 * 119.99565 * 2 1 3 5 5 N 1.46894 * 109.46965 * 188.15001 * 4 2 1 6 6 C 1.46901 * 111.00311 * 67.29715 * 5 4 2 7 7 C 1.50705 * 109.46808 * 63.22739 * 6 5 4 8 8 H 1.07998 * 119.99936 * 4.73151 * 7 6 5 9 9 C 1.37875 * 120.00117 * 184.72569 * 7 6 5 10 10 N 1.31515 * 119.99795 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00093 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47168 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47399 * 120.00239 * 11 9 7 14 14 H 1.48502 * 109.46870 * 239.99842 * 11 9 7 15 15 C 1.46908 * 111.00306 * 191.25307 * 5 4 2 16 16 C 1.50695 * 109.47255 * 172.77675 * 15 5 4 17 17 C 1.38678 * 120.41916 * 275.59115 * 16 15 5 18 18 C 1.38623 * 118.42063 * 179.78612 * 17 16 15 19 19 C 1.38221 * 119.16027 * 0.51413 * 18 17 16 20 20 N 1.31857 * 120.76823 * 359.72624 * 19 18 17 21 21 C 1.31887 * 121.72070 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.47419 * 239.99450 * 2 1 3 23 23 C 1.52994 * 109.47323 * 174.36953 * 22 2 1 24 24 C 1.53001 * 109.47148 * 180.02562 * 23 22 2 25 25 C 1.52994 * 109.47288 * 60.00037 * 24 23 22 26 26 C 1.53001 * 109.46904 * 299.99794 * 25 24 23 27 27 C 1.52998 * 109.47154 * 60.00343 * 26 25 24 28 28 H 1.08997 * 109.47343 * 183.62420 * 1 2 3 29 29 H 1.08996 * 109.47478 * 303.63248 * 1 2 3 30 30 H 1.09000 * 109.47001 * 63.63147 * 1 2 3 31 31 H 1.09002 * 109.47194 * 308.14916 * 4 2 1 32 32 H 1.08998 * 109.47359 * 68.15172 * 4 2 1 33 33 H 1.09002 * 109.47543 * 183.23105 * 6 5 4 34 34 H 1.08999 * 109.46921 * 303.23113 * 6 5 4 35 35 H 0.97001 * 119.99632 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.46613 * 292.77739 * 15 5 4 37 37 H 1.08995 * 109.46786 * 52.77212 * 15 5 4 38 38 H 1.08000 * 120.78441 * 0.02562 * 17 16 15 39 39 H 1.07998 * 120.41527 * 180.22099 * 18 17 16 40 40 H 1.08004 * 119.61906 * 179.74586 * 19 18 17 41 41 H 1.08003 * 119.61602 * 180.02562 * 21 20 19 42 42 H 1.09004 * 109.46995 * 294.37241 * 22 2 1 43 43 H 1.09003 * 109.47278 * 59.99762 * 23 22 2 44 44 H 1.09004 * 109.47321 * 300.00089 * 23 22 2 45 45 H 1.09008 * 109.46996 * 179.97438 * 24 23 22 46 46 H 1.09001 * 109.47090 * 299.99161 * 24 23 22 47 47 H 1.08995 * 109.47333 * 60.00069 * 25 24 23 48 48 H 1.09004 * 109.47148 * 180.02562 * 25 24 23 49 49 H 1.09003 * 109.47187 * 180.02562 * 26 25 24 50 50 H 1.08998 * 109.46947 * 299.99948 * 26 25 24 51 51 H 1.08995 * 109.47056 * 59.99742 * 27 26 25 52 52 H 1.08998 * 109.47653 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.4956 -0.5535 1.3516 6 6 3.8467 0.8473 1.6207 7 6 3.2842 1.2582 2.9571 8 1 2.7886 0.5296 3.5815 9 6 3.4025 2.5643 3.3828 10 7 4.0057 3.4516 2.6223 11 14 2.7059 3.0734 5.0395 12 1 2.0807 1.8975 5.6962 13 1 3.7999 3.5963 5.8969 14 1 1.6829 4.1317 4.8423 15 6 4.0575 -1.4433 2.3767 16 6 5.5622 -1.3747 2.3315 17 6 6.2743 -2.1601 1.4376 18 6 7.6570 -2.0607 1.4282 19 6 8.2760 -1.1962 2.3114 20 7 7.5669 -0.4680 3.1513 21 6 6.2501 -0.5331 3.1847 22 6 2.0401 -0.7213 -1.2491 23 6 3.5634 -0.5999 -1.3219 24 6 4.0734 -1.3208 -2.5714 25 6 3.4512 -0.6855 -3.8164 26 6 1.9277 -0.8070 -3.7436 27 6 1.4177 -0.0861 -2.4942 28 1 -0.3634 -1.0256 0.0650 29 1 -0.3634 0.5691 0.8556 30 1 -0.3633 0.4564 -0.9207 31 1 1.5625 -0.2983 2.1333 32 1 1.8004 -1.7823 1.1796 33 1 4.9314 0.9539 1.6347 34 1 3.4292 1.4829 0.8399 35 1 4.0886 4.3706 2.9216 36 1 3.7088 -1.1296 3.3607 37 1 3.7344 -2.4667 2.1861 38 1 5.7636 -2.8303 0.7621 39 1 8.2432 -2.6547 0.7428 40 1 9.3531 -1.1159 2.3132 41 1 5.7030 0.0791 3.8864 42 1 1.7613 -1.7740 -1.2001 43 1 4.0068 -1.0521 -0.4347 44 1 3.8421 0.4527 -1.3710 45 1 5.1588 -1.2339 -2.6234 46 1 3.7948 -2.3735 -2.5227 47 1 3.7298 0.3671 -3.8650 48 1 3.8142 -1.1993 -4.7065 49 1 1.4844 -0.3548 -4.6308 50 1 1.6491 -1.8596 -3.6950 51 1 1.6964 0.9665 -2.5429 52 1 0.3325 -0.1730 -2.4420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590162387.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:05 Heat of formation + Delta-G solvation = 11.235884 kcal Electronic energy + Delta-G solvation = -28433.130377 eV Core-core repulsion = 25010.249638 eV Total energy + Delta-G solvation = -3422.880739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.76816 -38.91102 -36.72089 -33.95892 -32.67853 -31.77890 -30.94283 -30.21068 -28.76919 -27.21395 -26.16102 -24.13324 -23.07196 -22.85454 -22.01312 -21.70244 -20.13598 -19.32693 -18.95462 -16.67183 -16.39358 -15.78284 -15.45629 -15.05956 -14.80057 -14.52242 -14.01754 -13.84683 -13.69328 -13.53882 -13.17776 -13.04954 -12.82787 -12.65610 -12.56054 -12.37650 -12.16665 -11.63914 -11.35276 -11.30547 -11.14626 -11.03091 -10.90822 -10.80215 -10.78437 -10.66595 -10.55972 -10.29728 -10.11624 -10.02174 -9.82174 -9.60695 -9.41851 -9.26309 -9.23112 -8.88935 -8.46782 -8.38718 -7.05191 -6.03249 -4.12824 1.63505 1.80407 3.25260 3.34798 3.35705 4.29988 4.39003 4.94060 4.99375 5.05962 5.09639 5.14448 5.23122 5.26793 5.44910 5.45390 5.49374 5.55465 5.61238 5.70900 5.74769 5.84597 5.90105 5.92224 5.94924 5.98788 6.04016 6.09947 6.12042 6.22296 6.28893 6.31991 6.34269 6.39300 6.44627 6.50755 6.52626 6.55221 6.56654 6.64667 6.76706 6.88087 6.91150 6.92188 7.14941 7.22037 7.29740 7.40564 7.56427 7.90468 8.00371 8.23057 8.26750 8.52537 8.97483 9.53922 11.00864 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009021 B = 0.006048 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.991387 B = 4628.576597 C = 6808.098318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 H 0.081 0.919 4 C 0.068 3.932 5 N -0.525 5.525 6 C 0.184 3.816 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.070 3.930 10 N -0.884 5.884 11 Si 0.881 3.119 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.285 1.285 15 C 0.095 3.905 16 C -0.107 4.107 17 C -0.065 4.065 18 C -0.185 4.185 19 C 0.082 3.918 20 N -0.490 5.490 21 C 0.126 3.874 22 C -0.064 4.064 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.119 4.119 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.038 0.962 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.161 0.839 42 H 0.055 0.945 43 H 0.118 0.882 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.048 0.952 49 H 0.051 0.949 50 H 0.055 0.945 51 H 0.058 0.942 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 -11.438 -8.126 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.099 0.901 4 C -0.060 4.060 5 N -0.247 5.247 6 C 0.059 3.941 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.134 4.134 10 N -0.523 5.523 11 Si 0.709 3.291 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.211 1.211 15 C -0.033 4.033 16 C -0.109 4.109 17 C -0.092 4.092 18 C -0.205 4.205 19 C -0.075 4.075 20 N -0.199 5.199 21 C -0.031 4.031 22 C -0.082 4.082 23 C -0.164 4.164 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.153 4.153 27 C -0.157 4.157 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.162 0.838 41 H 0.179 0.821 42 H 0.073 0.927 43 H 0.135 0.865 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.077 0.923 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.177 -10.808 -8.009 13.453 hybrid contribution -1.166 0.277 0.960 1.535 sum -1.342 -10.530 -7.049 12.742 Atomic orbital electron populations 1.21856 0.96408 1.00781 1.01288 1.21158 0.93848 1.01056 0.94097 0.90067 1.21949 0.89064 0.97835 0.97185 1.62747 1.09897 1.09439 1.42668 1.19816 0.96631 0.82267 0.95379 1.21682 1.37963 0.94776 1.04321 0.92545 1.24903 0.94981 0.96695 0.96783 1.69946 1.42301 1.03196 1.36818 0.86711 0.78958 0.78680 0.84712 1.19886 1.20928 1.21095 1.20852 0.89189 0.96626 0.96633 1.20806 0.97194 0.96653 0.96290 1.21378 0.93597 0.97681 0.96508 1.21979 0.95488 1.01728 1.01339 1.22614 0.99838 0.92797 0.92236 1.67722 1.08543 1.21426 1.22176 1.22957 0.89288 0.94101 0.96790 1.20992 0.96097 0.98213 0.92925 1.22068 0.94769 1.00911 0.98688 1.21581 0.99196 0.99206 0.95581 1.21547 0.95497 1.00829 0.97819 1.21495 0.95858 1.00192 0.97722 1.21726 0.99466 0.99812 0.94679 0.93587 0.92967 0.92827 0.93623 0.93346 0.95351 0.94426 0.92902 0.92754 0.92021 0.85483 0.85776 0.83837 0.82140 0.92690 0.86474 0.92991 0.92992 0.93091 0.92366 0.93279 0.93059 0.92650 0.92322 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.80 37.16 0.33 -1.75 16 2 C -0.08 -1.35 2.10 -90.62 -0.19 -1.54 16 3 H 0.08 1.61 6.21 -51.93 -0.32 1.28 16 4 C 0.07 1.17 4.13 -3.83 -0.02 1.16 16 5 N -0.52 -9.65 1.37 -237.51 -0.32 -9.98 16 6 C 0.18 4.27 4.39 -4.97 -0.02 4.24 16 7 C -0.55 -13.73 7.20 -34.44 -0.25 -13.98 16 8 H 0.06 1.41 5.89 -52.49 -0.31 1.10 16 9 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 10 N -0.88 -25.08 13.29 55.43 0.74 -24.34 16 11 Si 0.88 20.74 29.54 -169.99 -5.02 15.72 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.10 1.65 4.90 -4.97 -0.02 1.62 16 16 C -0.11 -1.86 4.61 -104.48 -0.48 -2.34 16 17 C -0.07 -0.97 9.88 -39.28 -0.39 -1.36 16 18 C -0.19 -2.59 10.11 -39.45 -0.40 -2.99 16 19 C 0.08 1.28 11.18 -17.55 -0.20 1.08 16 20 N -0.49 -9.32 10.36 -13.25 -0.14 -9.46 16 21 C 0.13 2.45 9.54 -17.55 -0.17 2.28 16 22 C -0.06 -0.92 1.77 -90.62 -0.16 -1.08 16 23 C -0.13 -1.97 4.43 -26.73 -0.12 -2.09 16 24 C -0.12 -1.58 5.92 -26.73 -0.16 -1.73 16 25 C -0.12 -1.48 5.92 -26.73 -0.16 -1.63 16 26 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 27 C -0.12 -1.58 4.70 -26.73 -0.13 -1.71 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.70 6.12 -51.93 -0.32 0.39 16 31 H 0.05 0.89 6.57 -51.93 -0.34 0.55 16 32 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 33 H 0.03 0.74 6.35 -51.93 -0.33 0.41 16 34 H 0.04 0.97 6.24 -51.93 -0.32 0.65 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.05 1.03 6.24 -51.93 -0.32 0.71 16 37 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 38 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.16 3.40 7.82 -52.48 -0.41 2.99 16 42 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.12 1.98 5.24 -51.93 -0.27 1.71 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.06 0.71 6.26 -51.93 -0.32 0.39 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -27.17 387.68 -10.84 -38.01 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -9.15 Total: 5.80 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -2.78 Total: -21.59 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.27 Total: -43.78 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.17 -10.84 -38.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590162387.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.248 kcal (2) G-P(sol) polarization free energy of solvation -27.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds