Wall clock time and date at job start Tue Mar 31 2020 11:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47568 * 2 1 4 4 C 1.53004 * 109.46718 * 119.99565 * 2 1 3 5 5 N 1.46894 * 109.46965 * 188.15001 * 4 2 1 6 6 C 1.46901 * 111.00311 * 67.29715 * 5 4 2 7 7 C 1.50705 * 109.46808 * 63.22739 * 6 5 4 8 8 H 1.07998 * 119.99936 * 4.73151 * 7 6 5 9 9 C 1.37875 * 120.00117 * 184.72569 * 7 6 5 10 10 N 1.31515 * 119.99795 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00093 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47168 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47399 * 120.00239 * 11 9 7 14 14 H 1.48502 * 109.46870 * 239.99842 * 11 9 7 15 15 C 1.46908 * 111.00306 * 191.25307 * 5 4 2 16 16 C 1.50695 * 109.47255 * 172.77675 * 15 5 4 17 17 C 1.38678 * 120.41916 * 275.59115 * 16 15 5 18 18 C 1.38623 * 118.42063 * 179.78612 * 17 16 15 19 19 C 1.38221 * 119.16027 * 0.51413 * 18 17 16 20 20 N 1.31857 * 120.76823 * 359.72624 * 19 18 17 21 21 C 1.31887 * 121.72070 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.47419 * 239.99450 * 2 1 3 23 23 C 1.52994 * 109.47323 * 174.36953 * 22 2 1 24 24 C 1.53001 * 109.47148 * 180.02562 * 23 22 2 25 25 C 1.52994 * 109.47288 * 60.00037 * 24 23 22 26 26 C 1.53001 * 109.46904 * 299.99794 * 25 24 23 27 27 C 1.52998 * 109.47154 * 60.00343 * 26 25 24 28 28 H 1.08997 * 109.47343 * 183.62420 * 1 2 3 29 29 H 1.08996 * 109.47478 * 303.63248 * 1 2 3 30 30 H 1.09000 * 109.47001 * 63.63147 * 1 2 3 31 31 H 1.09002 * 109.47194 * 308.14916 * 4 2 1 32 32 H 1.08998 * 109.47359 * 68.15172 * 4 2 1 33 33 H 1.09002 * 109.47543 * 183.23105 * 6 5 4 34 34 H 1.08999 * 109.46921 * 303.23113 * 6 5 4 35 35 H 0.97001 * 119.99632 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.46613 * 292.77739 * 15 5 4 37 37 H 1.08995 * 109.46786 * 52.77212 * 15 5 4 38 38 H 1.08000 * 120.78441 * 0.02562 * 17 16 15 39 39 H 1.07998 * 120.41527 * 180.22099 * 18 17 16 40 40 H 1.08004 * 119.61906 * 179.74586 * 19 18 17 41 41 H 1.08003 * 119.61602 * 180.02562 * 21 20 19 42 42 H 1.09004 * 109.46995 * 294.37241 * 22 2 1 43 43 H 1.09003 * 109.47278 * 59.99762 * 23 22 2 44 44 H 1.09004 * 109.47321 * 300.00089 * 23 22 2 45 45 H 1.09008 * 109.46996 * 179.97438 * 24 23 22 46 46 H 1.09001 * 109.47090 * 299.99161 * 24 23 22 47 47 H 1.08995 * 109.47333 * 60.00069 * 25 24 23 48 48 H 1.09004 * 109.47148 * 180.02562 * 25 24 23 49 49 H 1.09003 * 109.47187 * 180.02562 * 26 25 24 50 50 H 1.08998 * 109.46947 * 299.99948 * 26 25 24 51 51 H 1.08995 * 109.47056 * 59.99742 * 27 26 25 52 52 H 1.08998 * 109.47653 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.4956 -0.5535 1.3516 6 6 3.8467 0.8473 1.6207 7 6 3.2842 1.2582 2.9571 8 1 2.7886 0.5296 3.5815 9 6 3.4025 2.5643 3.3828 10 7 4.0057 3.4516 2.6223 11 14 2.7059 3.0734 5.0395 12 1 2.0807 1.8975 5.6962 13 1 3.7999 3.5963 5.8969 14 1 1.6829 4.1317 4.8423 15 6 4.0575 -1.4433 2.3767 16 6 5.5622 -1.3747 2.3315 17 6 6.2743 -2.1601 1.4376 18 6 7.6570 -2.0607 1.4282 19 6 8.2760 -1.1962 2.3114 20 7 7.5669 -0.4680 3.1513 21 6 6.2501 -0.5331 3.1847 22 6 2.0401 -0.7213 -1.2491 23 6 3.5634 -0.5999 -1.3219 24 6 4.0734 -1.3208 -2.5714 25 6 3.4512 -0.6855 -3.8164 26 6 1.9277 -0.8070 -3.7436 27 6 1.4177 -0.0861 -2.4942 28 1 -0.3634 -1.0256 0.0650 29 1 -0.3634 0.5691 0.8556 30 1 -0.3633 0.4564 -0.9207 31 1 1.5625 -0.2983 2.1333 32 1 1.8004 -1.7823 1.1796 33 1 4.9314 0.9539 1.6347 34 1 3.4292 1.4829 0.8399 35 1 4.0886 4.3706 2.9216 36 1 3.7088 -1.1296 3.3607 37 1 3.7344 -2.4667 2.1861 38 1 5.7636 -2.8303 0.7621 39 1 8.2432 -2.6547 0.7428 40 1 9.3531 -1.1159 2.3132 41 1 5.7030 0.0791 3.8864 42 1 1.7613 -1.7740 -1.2001 43 1 4.0068 -1.0521 -0.4347 44 1 3.8421 0.4527 -1.3710 45 1 5.1588 -1.2339 -2.6234 46 1 3.7948 -2.3735 -2.5227 47 1 3.7298 0.3671 -3.8650 48 1 3.8142 -1.1993 -4.7065 49 1 1.4844 -0.3548 -4.6308 50 1 1.6491 -1.8596 -3.6950 51 1 1.6964 0.9665 -2.5429 52 1 0.3325 -0.1730 -2.4420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590162387.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:05 Heat of formation + Delta-G solvation = -0.129673 kcal Electronic energy + Delta-G solvation = -28433.623224 eV Core-core repulsion = 25010.249638 eV Total energy + Delta-G solvation = -3423.373587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10357 -40.15414 -38.12968 -35.25155 -34.59442 -33.17231 -32.22918 -31.34849 -29.93778 -29.08597 -27.48465 -25.87519 -24.41886 -24.19493 -23.17327 -22.90802 -21.58912 -20.47024 -20.38276 -18.48186 -17.77928 -17.20846 -16.78171 -16.65399 -16.34943 -15.94831 -15.32080 -15.15835 -14.92335 -14.76348 -14.46487 -14.40342 -14.17309 -14.08498 -13.86999 -13.75999 -13.42157 -13.09445 -12.91402 -12.81455 -12.55776 -12.54020 -12.46059 -12.27882 -12.07502 -11.98457 -11.82931 -11.77842 -11.63737 -11.60536 -11.24313 -11.01545 -10.64525 -10.58537 -10.53541 -10.46509 -10.20949 -9.76094 -8.71990 -8.07008 -6.26901 0.34638 0.54346 1.32669 1.35994 1.44649 2.37699 2.96817 3.15983 3.55228 3.72029 3.87940 4.01332 4.06752 4.08265 4.13048 4.25274 4.30183 4.32821 4.42650 4.54521 4.60869 4.69490 4.71886 4.76096 4.80145 4.82580 4.87613 4.93393 4.95476 5.02634 5.04816 5.05569 5.10414 5.14071 5.28231 5.30524 5.31697 5.36033 5.41999 5.44611 5.46188 5.49722 5.55683 5.56782 5.61801 5.74046 5.83811 5.90826 5.97880 6.07321 6.19867 6.31818 6.62114 6.95803 7.20870 7.43428 8.91541 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009021 B = 0.006048 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.991387 B = 4628.576597 C = 6808.098318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 H 0.033 0.967 4 C 0.069 3.931 5 N -0.511 5.511 6 C 0.212 3.788 7 C -0.538 4.538 8 H 0.057 0.943 9 C 0.016 3.984 10 N -0.924 5.924 11 Si 0.941 3.059 12 H -0.264 1.264 13 H -0.285 1.285 14 H -0.283 1.283 15 C 0.098 3.902 16 C -0.118 4.118 17 C -0.061 4.061 18 C -0.169 4.169 19 C 0.072 3.928 20 N -0.525 5.525 21 C 0.096 3.904 22 C -0.056 4.056 23 C -0.121 4.121 24 C -0.113 4.113 25 C -0.120 4.120 26 C -0.111 4.111 27 C -0.118 4.118 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.018 0.982 32 H 0.082 0.918 33 H -0.004 1.004 34 H 0.005 0.995 35 H 0.259 0.741 36 H 0.030 0.970 37 H 0.098 0.902 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.175 0.825 41 H 0.125 0.875 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.010 0.990 45 H 0.049 0.951 46 H 0.070 0.930 47 H 0.040 0.960 48 H 0.069 0.931 49 H 0.063 0.937 50 H 0.071 0.929 51 H 0.034 0.966 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 -15.059 -9.899 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.052 0.948 4 C -0.059 4.059 5 N -0.233 5.233 6 C 0.086 3.914 7 C -0.577 4.577 8 H 0.075 0.925 9 C -0.183 4.183 10 N -0.565 5.565 11 Si 0.767 3.233 12 H -0.188 1.188 13 H -0.212 1.212 14 H -0.209 1.209 15 C -0.031 4.031 16 C -0.120 4.120 17 C -0.088 4.088 18 C -0.189 4.189 19 C -0.085 4.085 20 N -0.234 5.234 21 C -0.060 4.060 22 C -0.074 4.074 23 C -0.159 4.159 24 C -0.150 4.150 25 C -0.158 4.158 26 C -0.148 4.148 27 C -0.155 4.155 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.014 0.986 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.116 0.884 38 H 0.176 0.824 39 H 0.187 0.813 40 H 0.192 0.808 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.053 0.947 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.713 -14.446 -9.771 17.455 hybrid contribution -0.913 1.351 1.479 2.201 sum -1.626 -13.096 -8.293 15.586 Atomic orbital electron populations 1.21804 0.94483 1.02177 1.01257 1.21093 0.95441 0.98468 0.94924 0.94846 1.22033 0.87696 0.99639 0.96528 1.62713 1.10960 1.06730 1.42873 1.19254 0.94030 0.84783 0.93348 1.21943 1.36449 0.94520 1.04801 0.92480 1.25648 0.95641 0.97077 0.99932 1.70079 1.44340 1.03406 1.38658 0.85768 0.78115 0.78452 0.80960 1.18812 1.21165 1.20902 1.20913 0.89464 0.97781 0.94899 1.20794 0.97137 0.97204 0.96897 1.21737 0.94266 0.97047 0.95703 1.22436 0.95351 1.00536 1.00540 1.23229 1.01219 0.92332 0.91697 1.67616 1.08502 1.23118 1.24159 1.22557 0.89935 0.95530 0.97983 1.20923 0.95175 0.98928 0.92388 1.21933 0.95790 0.98473 0.99701 1.21528 0.99091 0.99851 0.94551 1.21553 0.96100 0.99949 0.98158 1.21476 0.95228 1.00952 0.97136 1.21701 1.00259 0.98570 0.95010 0.91123 0.94474 0.91699 0.96347 0.90015 0.98563 0.97721 0.93165 0.95152 0.88412 0.82413 0.81329 0.80803 0.85780 0.90650 0.87655 0.97146 0.93210 0.91143 0.94149 0.91252 0.91822 0.90996 0.94711 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.80 71.98 0.63 -3.19 16 2 C -0.08 -2.64 2.10 -10.79 -0.02 -2.66 16 3 H 0.03 1.42 6.21 -2.39 -0.01 1.40 16 4 C 0.07 2.36 4.13 86.31 0.36 2.72 16 5 N -0.51 -19.21 1.37 -905.35 -1.24 -20.44 16 6 C 0.21 10.53 4.39 85.56 0.38 10.90 16 7 C -0.54 -28.51 7.20 25.60 0.18 -28.33 16 8 H 0.06 2.97 5.89 -2.91 -0.02 2.96 16 9 C 0.02 0.91 5.46 84.65 0.46 1.37 16 10 N -0.92 -55.66 13.29 21.45 0.28 -55.37 16 11 Si 0.94 44.43 29.54 68.60 2.03 46.45 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 C 0.10 3.35 4.90 85.55 0.42 3.77 16 16 C -0.12 -4.11 4.61 -19.77 -0.09 -4.20 16 17 C -0.06 -1.68 9.88 22.47 0.22 -1.46 16 18 C -0.17 -4.18 10.11 22.36 0.23 -3.95 16 19 C 0.07 2.15 11.18 84.69 0.95 3.10 16 20 N -0.52 -20.56 10.36 -195.84 -2.03 -22.59 16 21 C 0.10 3.96 9.54 84.67 0.81 4.77 16 22 C -0.06 -1.54 1.77 -10.79 -0.02 -1.56 16 23 C -0.12 -3.74 4.43 30.59 0.14 -3.60 16 24 C -0.11 -2.75 5.92 30.59 0.18 -2.56 16 25 C -0.12 -2.70 5.92 30.59 0.18 -2.52 16 26 C -0.11 -2.29 5.92 30.59 0.18 -2.11 16 27 C -0.12 -2.95 4.70 30.59 0.14 -2.81 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.62 6.12 -2.39 -0.01 1.60 16 31 H 0.02 0.73 6.57 -2.39 -0.02 0.71 16 32 H 0.08 2.29 7.92 -2.39 -0.02 2.28 16 33 H 0.00 -0.21 6.35 -2.39 -0.02 -0.22 16 34 H 0.00 0.27 6.24 -2.39 -0.01 0.25 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.03 1.19 6.24 -2.39 -0.01 1.17 16 37 H 0.10 2.66 7.96 -2.39 -0.02 2.64 16 38 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.17 3.93 8.06 -2.91 -0.02 3.90 16 41 H 0.12 5.83 7.82 -2.91 -0.02 5.80 16 42 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 43 H 0.11 3.48 5.24 -2.39 -0.01 3.46 16 44 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 49 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.07 1.59 6.26 -2.39 -0.01 1.58 16 Total: -1.00 -65.07 387.68 5.24 -59.83 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.87 Total: 24.46 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 5.32 Total: -32.33 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -2.98 Total: -98.41 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.07 5.24 -59.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590162387.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.699 kcal (2) G-P(sol) polarization free energy of solvation -65.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds