Wall clock time and date at job start Tue Mar 31 2020 11:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47052 * 2 1 4 4 C 1.52999 * 109.47159 * 240.00385 * 2 1 3 5 5 N 1.46896 * 109.47269 * 63.11901 * 4 2 1 6 6 C 1.46898 * 111.00029 * 200.26196 * 5 4 2 7 7 C 1.50708 * 109.46991 * 66.51599 * 6 5 4 8 8 H 1.07998 * 119.99714 * 5.19891 * 7 6 5 9 9 C 1.37878 * 119.99970 * 185.20510 * 7 6 5 10 10 N 1.31509 * 119.99689 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99944 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47023 * 90.00806 * 11 9 7 13 13 H 1.48501 * 109.46954 * 210.00312 * 11 9 7 14 14 H 1.48498 * 109.47568 * 330.00513 * 11 9 7 15 15 C 1.46908 * 110.99868 * 76.31401 * 5 4 2 16 16 C 1.50693 * 109.46783 * 189.99859 * 15 5 4 17 17 C 1.38675 * 120.42129 * 269.71815 * 16 15 5 18 18 C 1.38623 * 118.42238 * 179.79076 * 17 16 15 19 19 C 1.38230 * 119.16318 * 0.50750 * 18 17 16 20 20 N 1.31853 * 120.76080 * 359.73081 * 19 18 17 21 21 C 1.31888 * 121.72604 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.47518 * 120.00110 * 2 1 3 23 23 C 1.53011 * 109.46837 * 300.00176 * 22 2 1 24 24 C 1.52998 * 109.46837 * 180.02562 * 23 22 2 25 25 C 1.53000 * 109.47518 * 59.99824 * 24 23 22 26 26 C 1.52999 * 109.47159 * 300.00275 * 25 24 23 27 27 C 1.52995 * 109.47444 * 180.02562 * 22 2 1 28 28 H 1.09007 * 109.46537 * 176.10996 * 1 2 3 29 29 H 1.08998 * 109.47114 * 296.10179 * 1 2 3 30 30 H 1.08992 * 109.47248 * 56.10997 * 1 2 3 31 31 H 1.09004 * 109.47333 * 183.12451 * 4 2 1 32 32 H 1.08997 * 109.47108 * 303.11806 * 4 2 1 33 33 H 1.08996 * 109.47461 * 186.51264 * 6 5 4 34 34 H 1.09003 * 109.47242 * 306.51531 * 6 5 4 35 35 H 0.97000 * 120.00022 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.46576 * 309.99657 * 15 5 4 37 37 H 1.09001 * 109.47247 * 69.99960 * 15 5 4 38 38 H 1.08006 * 120.78748 * 0.02562 * 17 16 15 39 39 H 1.08005 * 120.42307 * 180.22051 * 18 17 16 40 40 H 1.07996 * 119.62000 * 179.75142 * 19 18 17 41 41 H 1.08003 * 119.61560 * 179.97438 * 21 20 19 42 42 H 1.08994 * 109.47184 * 59.99859 * 22 2 1 43 43 H 1.08994 * 109.46975 * 299.99812 * 23 22 2 44 44 H 1.08998 * 109.46809 * 60.00048 * 23 22 2 45 45 H 1.09003 * 109.47049 * 299.99712 * 24 23 22 46 46 H 1.09000 * 109.46725 * 179.97438 * 24 23 22 47 47 H 1.09000 * 109.47418 * 179.97438 * 25 24 23 48 48 H 1.09004 * 109.46541 * 60.00019 * 25 24 23 49 49 H 1.09003 * 109.46824 * 299.99754 * 26 25 24 50 50 H 1.08998 * 109.46759 * 179.97438 * 26 25 24 51 51 H 1.09006 * 109.46689 * 299.99968 * 27 22 2 52 52 H 1.09003 * 109.47512 * 59.99653 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6129 0.0135 -2.4475 6 6 1.6476 -0.8505 -3.6350 7 6 0.6068 -1.9321 -3.4998 8 1 -0.0737 -1.9249 -2.6612 9 6 0.5236 -2.9309 -4.4467 10 7 -0.3849 -3.8744 -4.3290 11 14 1.7003 -2.9430 -5.8974 12 1 2.9143 -3.7215 -5.5436 13 1 1.0354 -3.5682 -7.0689 14 1 2.0866 -1.5490 -6.2332 15 6 2.4323 1.2163 -2.6475 16 6 1.8186 2.0680 -3.7286 17 6 2.1844 1.8909 -5.0545 18 6 1.5906 2.6942 -6.0157 19 6 0.6680 3.6454 -5.6223 20 7 0.3479 3.7893 -4.3513 21 6 0.8890 3.0397 -3.4107 22 6 2.0401 -0.7212 1.2492 23 6 1.5300 0.0000 2.4985 24 6 2.0407 -0.7208 3.7477 25 6 3.5707 -0.7203 3.7474 26 6 4.0807 -1.4414 2.4981 27 6 3.5701 -0.7207 1.2495 28 1 -0.3633 -1.0254 -0.0697 29 1 -0.3633 0.4521 0.9228 30 1 -0.3633 0.5730 -0.8530 31 1 3.1286 -0.7699 -1.2217 32 1 1.6318 -1.7314 -1.2777 33 1 1.4393 -0.2550 -4.5238 34 1 2.6343 -1.3049 -3.7251 35 1 -0.4433 -4.5773 -4.9949 36 1 2.4763 1.7845 -1.7183 37 1 3.4401 0.9244 -2.9431 38 1 2.9118 1.1424 -5.3321 39 1 1.8489 2.5814 -7.0583 40 1 0.2039 4.2779 -6.3645 41 1 0.6021 3.1869 -2.3799 42 1 1.6768 -1.7489 1.2492 43 1 1.8933 1.0276 2.4985 44 1 0.4401 -0.0001 2.4985 45 1 1.6777 -1.7487 3.7479 46 1 1.6777 -0.2067 4.6377 47 1 3.9344 -1.2335 4.6375 48 1 3.9335 0.3076 3.7472 49 1 3.7177 -2.4693 2.4983 50 1 5.1707 -1.4406 2.4977 51 1 3.9337 -1.2343 0.3594 52 1 3.9331 0.3071 1.2497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590162388.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:08 Heat of formation + Delta-G solvation = 6.841358 kcal Electronic energy + Delta-G solvation = -27536.951270 eV Core-core repulsion = 24113.879970 eV Total energy + Delta-G solvation = -3423.071300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.96718 -39.10154 -37.00147 -34.02340 -32.74572 -31.96065 -31.23740 -30.77289 -28.90956 -27.93507 -26.25281 -24.34566 -23.33946 -22.63714 -22.19245 -21.81393 -20.29088 -19.65884 -19.18982 -16.88319 -16.80129 -16.06103 -15.72567 -15.28501 -14.71667 -14.54472 -14.42912 -14.06101 -13.80301 -13.79152 -13.29169 -13.23226 -13.02373 -12.83293 -12.78323 -12.50065 -12.36518 -12.23678 -12.00673 -11.79427 -11.33169 -11.16909 -11.04465 -10.99383 -10.89627 -10.80490 -10.65701 -10.53747 -10.29899 -9.99034 -9.89260 -9.70581 -9.63237 -9.44452 -9.29702 -9.12308 -8.68587 -8.58490 -7.39455 -6.07081 -4.03267 1.39949 1.56973 3.23331 3.31609 3.32092 4.05219 4.38746 4.64247 4.70975 4.76695 4.81293 4.93210 5.05358 5.13842 5.21784 5.24963 5.26886 5.29345 5.33031 5.48198 5.52457 5.54170 5.57889 5.59077 5.65390 5.71636 5.81221 5.92051 5.95870 5.98917 6.04750 6.05694 6.09846 6.17483 6.19338 6.25047 6.31474 6.33923 6.37469 6.48127 6.52115 6.56735 6.60249 6.63637 6.79905 6.88926 6.96920 6.98069 7.05505 7.59928 7.87185 8.01839 8.23640 8.63885 9.03755 9.55258 11.06107 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.004513 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.378333 B = 6203.424889 C = 8052.612464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 H 0.058 0.942 4 C 0.064 3.936 5 N -0.517 5.517 6 C 0.159 3.841 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.899 5.899 11 Si 0.871 3.129 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.092 3.908 16 C -0.110 4.110 17 C -0.066 4.066 18 C -0.175 4.175 19 C 0.088 3.912 20 N -0.490 5.490 21 C 0.115 3.885 22 C -0.081 4.081 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.116 4.116 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.092 0.908 33 H 0.031 0.969 34 H -0.019 1.019 35 H 0.263 0.737 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.056 0.944 51 H 0.065 0.935 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.308 10.514 9.256 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 H 0.077 0.923 4 C -0.064 4.064 5 N -0.240 5.240 6 C 0.033 3.967 7 C -0.543 4.543 8 H 0.101 0.899 9 C -0.132 4.132 10 N -0.538 5.538 11 Si 0.699 3.301 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.037 4.037 16 C -0.112 4.112 17 C -0.092 4.092 18 C -0.195 4.195 19 C -0.070 4.070 20 N -0.198 5.198 21 C -0.042 4.042 22 C -0.100 4.100 23 C -0.151 4.151 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.154 4.154 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.110 0.890 33 H 0.049 0.951 34 H -0.001 1.001 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.084 0.916 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.134 11.124 9.467 16.257 hybrid contribution 2.051 -1.224 -1.412 2.775 sum 9.185 9.900 8.055 15.724 Atomic orbital electron populations 1.21709 0.94580 1.02284 1.00597 1.21122 0.96690 0.98524 0.93227 0.92314 1.22184 0.96360 0.99100 0.88731 1.61947 1.51178 1.06265 1.04635 1.20268 0.95377 0.92289 0.88797 1.21014 1.16047 1.06506 1.10711 0.89930 1.24881 0.95380 0.95411 0.97565 1.69884 1.34318 1.13805 1.35795 0.86931 0.81545 0.78463 0.83186 1.20429 1.21203 1.19384 1.21008 0.94003 0.92815 0.95865 1.20801 0.98186 0.97106 0.95118 1.21529 0.98265 0.96784 0.92650 1.22052 0.99290 0.97752 1.00409 1.22616 0.94926 0.96407 0.93014 1.67650 1.24596 1.26003 1.01562 1.22541 0.91874 0.91080 0.98735 1.21172 0.94632 1.00059 0.94179 1.21624 1.00615 0.98949 0.93894 1.21542 0.95480 1.00847 0.97860 1.21525 0.95974 1.00425 0.97617 1.21529 0.99693 0.99626 0.94873 1.21641 0.95840 1.00321 0.97571 0.92822 0.94165 0.91530 0.95900 0.88979 0.95097 1.00142 0.92727 0.90438 0.94986 0.85433 0.85305 0.83324 0.83037 0.91094 0.92428 0.91570 0.92095 0.92555 0.92650 0.92351 0.92048 0.92561 0.91609 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.77 37.16 0.33 -1.77 16 2 C -0.08 -1.10 2.03 -90.62 -0.18 -1.28 16 3 H 0.06 0.80 6.74 -51.93 -0.35 0.45 16 4 C 0.06 1.12 3.98 -3.83 -0.02 1.10 16 5 N -0.52 -9.90 3.85 -237.51 -0.92 -10.82 16 6 C 0.16 3.67 3.58 -4.97 -0.02 3.65 16 7 C -0.50 -13.84 8.67 -34.44 -0.30 -14.14 16 8 H 0.08 2.48 7.79 -52.49 -0.41 2.07 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 11 Si 0.87 21.21 27.37 -169.99 -4.65 16.56 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.24 6.69 56.52 0.38 -5.86 16 15 C 0.09 1.46 4.96 -4.97 -0.02 1.44 16 16 C -0.11 -1.78 4.91 -104.48 -0.51 -2.30 16 17 C -0.07 -1.05 8.03 -39.28 -0.32 -1.37 16 18 C -0.18 -2.51 10.11 -39.44 -0.40 -2.91 16 19 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 20 N -0.49 -7.96 10.36 -13.25 -0.14 -8.09 16 21 C 0.11 1.83 10.86 -17.55 -0.19 1.63 16 22 C -0.08 -1.02 1.78 -90.62 -0.16 -1.18 16 23 C -0.11 -1.25 4.86 -26.73 -0.13 -1.38 16 24 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 25 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 26 C -0.12 -1.24 5.92 -26.76 -0.16 -1.40 16 27 C -0.12 -1.36 4.85 -26.76 -0.13 -1.49 16 28 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.04 0.53 6.23 -51.93 -0.32 0.21 16 30 H 0.07 1.16 7.81 -51.93 -0.41 0.75 16 31 H 0.02 0.38 6.12 -51.93 -0.32 0.06 16 32 H 0.09 1.92 6.71 -51.93 -0.35 1.57 16 33 H 0.03 0.74 4.91 -51.93 -0.26 0.48 16 34 H -0.02 -0.45 7.26 -51.93 -0.38 -0.82 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 36 H 0.08 1.07 6.58 -51.93 -0.34 0.73 16 37 H 0.03 0.50 8.07 -51.93 -0.42 0.08 16 38 H 0.13 2.00 7.90 -52.48 -0.41 1.58 16 39 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.15 2.13 8.06 -52.48 -0.42 1.71 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.74 6.34 -51.93 -0.33 0.42 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 52 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -29.94 390.99 -11.14 -41.08 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -9.28 Total: 2.86 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -2.82 Total: -21.08 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.28 Total: -45.30 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.65 Total: 16.56 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.94 -11.14 -41.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590162388.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.921 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds