Wall clock time and date at job start Tue Mar 31 2020 11:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47052 * 2 1 4 4 C 1.52999 * 109.47159 * 240.00385 * 2 1 3 5 5 N 1.46896 * 109.47269 * 63.11901 * 4 2 1 6 6 C 1.46898 * 111.00029 * 200.26196 * 5 4 2 7 7 C 1.50708 * 109.46991 * 66.51599 * 6 5 4 8 8 H 1.07998 * 119.99714 * 5.19891 * 7 6 5 9 9 C 1.37878 * 119.99970 * 185.20510 * 7 6 5 10 10 N 1.31509 * 119.99689 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99944 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47023 * 90.00806 * 11 9 7 13 13 H 1.48501 * 109.46954 * 210.00312 * 11 9 7 14 14 H 1.48498 * 109.47568 * 330.00513 * 11 9 7 15 15 C 1.46908 * 110.99868 * 76.31401 * 5 4 2 16 16 C 1.50693 * 109.46783 * 189.99859 * 15 5 4 17 17 C 1.38675 * 120.42129 * 269.71815 * 16 15 5 18 18 C 1.38623 * 118.42238 * 179.79076 * 17 16 15 19 19 C 1.38230 * 119.16318 * 0.50750 * 18 17 16 20 20 N 1.31853 * 120.76080 * 359.73081 * 19 18 17 21 21 C 1.31888 * 121.72604 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.47518 * 120.00110 * 2 1 3 23 23 C 1.53011 * 109.46837 * 300.00176 * 22 2 1 24 24 C 1.52998 * 109.46837 * 180.02562 * 23 22 2 25 25 C 1.53000 * 109.47518 * 59.99824 * 24 23 22 26 26 C 1.52999 * 109.47159 * 300.00275 * 25 24 23 27 27 C 1.52995 * 109.47444 * 180.02562 * 22 2 1 28 28 H 1.09007 * 109.46537 * 176.10996 * 1 2 3 29 29 H 1.08998 * 109.47114 * 296.10179 * 1 2 3 30 30 H 1.08992 * 109.47248 * 56.10997 * 1 2 3 31 31 H 1.09004 * 109.47333 * 183.12451 * 4 2 1 32 32 H 1.08997 * 109.47108 * 303.11806 * 4 2 1 33 33 H 1.08996 * 109.47461 * 186.51264 * 6 5 4 34 34 H 1.09003 * 109.47242 * 306.51531 * 6 5 4 35 35 H 0.97000 * 120.00022 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.46576 * 309.99657 * 15 5 4 37 37 H 1.09001 * 109.47247 * 69.99960 * 15 5 4 38 38 H 1.08006 * 120.78748 * 0.02562 * 17 16 15 39 39 H 1.08005 * 120.42307 * 180.22051 * 18 17 16 40 40 H 1.07996 * 119.62000 * 179.75142 * 19 18 17 41 41 H 1.08003 * 119.61560 * 179.97438 * 21 20 19 42 42 H 1.08994 * 109.47184 * 59.99859 * 22 2 1 43 43 H 1.08994 * 109.46975 * 299.99812 * 23 22 2 44 44 H 1.08998 * 109.46809 * 60.00048 * 23 22 2 45 45 H 1.09003 * 109.47049 * 299.99712 * 24 23 22 46 46 H 1.09000 * 109.46725 * 179.97438 * 24 23 22 47 47 H 1.09000 * 109.47418 * 179.97438 * 25 24 23 48 48 H 1.09004 * 109.46541 * 60.00019 * 25 24 23 49 49 H 1.09003 * 109.46824 * 299.99754 * 26 25 24 50 50 H 1.08998 * 109.46759 * 179.97438 * 26 25 24 51 51 H 1.09006 * 109.46689 * 299.99968 * 27 22 2 52 52 H 1.09003 * 109.47512 * 59.99653 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6129 0.0135 -2.4475 6 6 1.6476 -0.8505 -3.6350 7 6 0.6068 -1.9321 -3.4998 8 1 -0.0737 -1.9249 -2.6612 9 6 0.5236 -2.9309 -4.4467 10 7 -0.3849 -3.8744 -4.3290 11 14 1.7003 -2.9430 -5.8974 12 1 2.9143 -3.7215 -5.5436 13 1 1.0354 -3.5682 -7.0689 14 1 2.0866 -1.5490 -6.2332 15 6 2.4323 1.2163 -2.6475 16 6 1.8186 2.0680 -3.7286 17 6 2.1844 1.8909 -5.0545 18 6 1.5906 2.6942 -6.0157 19 6 0.6680 3.6454 -5.6223 20 7 0.3479 3.7893 -4.3513 21 6 0.8890 3.0397 -3.4107 22 6 2.0401 -0.7212 1.2492 23 6 1.5300 0.0000 2.4985 24 6 2.0407 -0.7208 3.7477 25 6 3.5707 -0.7203 3.7474 26 6 4.0807 -1.4414 2.4981 27 6 3.5701 -0.7207 1.2495 28 1 -0.3633 -1.0254 -0.0697 29 1 -0.3633 0.4521 0.9228 30 1 -0.3633 0.5730 -0.8530 31 1 3.1286 -0.7699 -1.2217 32 1 1.6318 -1.7314 -1.2777 33 1 1.4393 -0.2550 -4.5238 34 1 2.6343 -1.3049 -3.7251 35 1 -0.4433 -4.5773 -4.9949 36 1 2.4763 1.7845 -1.7183 37 1 3.4401 0.9244 -2.9431 38 1 2.9118 1.1424 -5.3321 39 1 1.8489 2.5814 -7.0583 40 1 0.2039 4.2779 -6.3645 41 1 0.6021 3.1869 -2.3799 42 1 1.6768 -1.7489 1.2492 43 1 1.8933 1.0276 2.4985 44 1 0.4401 -0.0001 2.4985 45 1 1.6777 -1.7487 3.7479 46 1 1.6777 -0.2067 4.6377 47 1 3.9344 -1.2335 4.6375 48 1 3.9335 0.3076 3.7472 49 1 3.7177 -2.4693 2.4983 50 1 5.1707 -1.4406 2.4977 51 1 3.9337 -1.2343 0.3594 52 1 3.9331 0.3071 1.2497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590162388.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:07 Heat of formation + Delta-G solvation = -8.785681 kcal Electronic energy + Delta-G solvation = -27537.628909 eV Core-core repulsion = 24113.879970 eV Total energy + Delta-G solvation = -3423.748939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15663 -40.15960 -38.34067 -35.23775 -34.68945 -33.25648 -32.50628 -31.67603 -30.22528 -29.50483 -27.55905 -25.86194 -24.53165 -23.84707 -23.29631 -23.01812 -21.68360 -20.61239 -20.46988 -18.95967 -17.94346 -17.33613 -16.87968 -16.46557 -16.27706 -16.12530 -15.54894 -15.22779 -14.98491 -14.88313 -14.55019 -14.49653 -14.33278 -14.18207 -13.96940 -13.91291 -13.74858 -13.43875 -13.28857 -13.10209 -12.73388 -12.62494 -12.40628 -12.16744 -12.11974 -11.96354 -11.89835 -11.85278 -11.71142 -11.48867 -11.28770 -11.15203 -10.81405 -10.71072 -10.67883 -10.58337 -10.35243 -9.86536 -8.92509 -8.27182 -6.28245 0.24582 0.38681 1.29943 1.31697 1.41827 2.32621 2.85122 3.07025 3.35921 3.61953 3.82539 3.87340 3.91324 3.95209 3.99501 4.08334 4.14493 4.16835 4.33821 4.43524 4.47334 4.52274 4.55187 4.59246 4.65969 4.72995 4.75125 4.81206 4.81998 4.84712 4.90283 4.93694 4.96085 5.06297 5.12424 5.15145 5.21105 5.23205 5.27701 5.32360 5.33143 5.39454 5.40909 5.43678 5.52745 5.57930 5.58707 5.68106 5.75371 5.84345 6.03854 6.42393 6.68301 6.79178 7.08223 7.34455 8.89614 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.004513 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.378333 B = 6203.424889 C = 8052.612464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 H 0.079 0.921 4 C 0.070 3.930 5 N -0.528 5.528 6 C 0.172 3.828 7 C -0.504 4.504 8 H 0.038 0.962 9 C 0.008 3.992 10 N -0.949 5.949 11 Si 0.938 3.062 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.246 1.246 15 C 0.096 3.904 16 C -0.125 4.125 17 C -0.084 4.084 18 C -0.174 4.174 19 C 0.084 3.916 20 N -0.510 5.510 21 C 0.105 3.895 22 C -0.077 4.077 23 C -0.110 4.110 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.113 4.113 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.032 0.968 34 H -0.019 1.019 35 H 0.264 0.736 36 H 0.102 0.898 37 H 0.040 0.960 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.181 0.819 41 H 0.163 0.837 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.050 0.950 50 H 0.067 0.933 51 H 0.050 0.950 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.375 12.846 9.273 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.084 4.084 3 H 0.097 0.903 4 C -0.057 4.057 5 N -0.252 5.252 6 C 0.045 3.955 7 C -0.543 4.543 8 H 0.056 0.944 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.762 3.238 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.170 1.170 15 C -0.032 4.032 16 C -0.128 4.128 17 C -0.110 4.110 18 C -0.194 4.194 19 C -0.073 4.073 20 N -0.219 5.219 21 C -0.052 4.052 22 C -0.096 4.096 23 C -0.147 4.147 24 C -0.157 4.157 25 C -0.152 4.152 26 C -0.157 4.157 27 C -0.151 4.151 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.050 0.950 34 H -0.002 1.002 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.058 0.942 38 H 0.147 0.853 39 H 0.175 0.825 40 H 0.198 0.802 41 H 0.180 0.820 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.069 0.931 50 H 0.086 0.914 51 H 0.069 0.931 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.214 13.479 9.505 18.893 hybrid contribution 1.326 -1.927 -1.377 2.715 sum 10.540 11.552 8.128 17.624 Atomic orbital electron populations 1.21626 0.95716 1.00083 1.00997 1.21045 0.95544 0.99297 0.92520 0.90277 1.22103 0.96834 0.97179 0.89633 1.61841 1.53026 1.06735 1.03557 1.19964 0.93494 0.91450 0.90590 1.21242 1.16088 1.07929 1.09038 0.94391 1.25789 0.97287 0.94961 1.00892 1.70052 1.36736 1.14958 1.37273 0.85844 0.79171 0.79710 0.79050 1.19486 1.21057 1.16978 1.21056 0.93607 0.91240 0.97281 1.20865 0.98889 0.97571 0.95445 1.21749 0.98794 0.97426 0.93062 1.22392 0.98529 0.96894 1.01578 1.23191 0.94596 0.96552 0.93002 1.67690 1.25163 1.26534 1.02491 1.22758 0.91833 0.91116 0.99451 1.21107 0.95609 0.98741 0.94190 1.21587 1.00333 0.99425 0.93343 1.21542 0.96014 1.00348 0.97779 1.21512 0.95376 1.00929 0.97384 1.21526 1.00368 0.99008 0.94789 1.21602 0.94707 1.01061 0.97707 0.95972 0.91526 0.93563 0.94622 0.93471 0.95048 1.00155 0.92699 0.88024 0.94218 0.85312 0.82471 0.80249 0.81962 0.93454 0.91176 0.92045 0.93030 0.91045 0.91508 0.91411 0.93135 0.91437 0.93130 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.77 71.98 0.63 -3.45 16 2 C -0.07 -1.86 2.03 -10.79 -0.02 -1.88 16 3 H 0.08 1.98 6.74 -2.39 -0.02 1.96 16 4 C 0.07 2.51 3.98 86.30 0.34 2.85 16 5 N -0.53 -20.35 3.85 -905.35 -3.49 -23.84 16 6 C 0.17 8.00 3.58 85.56 0.31 8.31 16 7 C -0.50 -28.91 8.67 25.60 0.22 -28.68 16 8 H 0.04 2.45 7.79 -2.91 -0.02 2.43 16 9 C 0.01 0.44 5.47 84.66 0.46 0.90 16 10 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 11 Si 0.94 43.92 27.37 68.60 1.88 45.80 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.25 -10.53 6.69 99.48 0.67 -9.86 16 15 C 0.10 2.91 4.96 85.55 0.42 3.34 16 16 C -0.13 -3.89 4.91 -19.77 -0.10 -3.99 16 17 C -0.08 -2.52 8.03 22.47 0.18 -2.34 16 18 C -0.17 -4.53 10.11 22.36 0.23 -4.30 16 19 C 0.08 2.19 11.18 84.69 0.95 3.14 16 20 N -0.51 -15.72 10.36 -195.84 -2.03 -17.75 16 21 C 0.11 3.20 10.86 84.67 0.92 4.12 16 22 C -0.08 -1.92 1.78 -10.79 -0.02 -1.94 16 23 C -0.11 -2.23 4.86 30.60 0.15 -2.08 16 24 C -0.12 -2.14 5.92 30.59 0.18 -1.96 16 25 C -0.11 -1.89 5.92 30.59 0.18 -1.70 16 26 C -0.12 -2.30 5.92 30.58 0.18 -2.12 16 27 C -0.11 -2.50 4.85 30.57 0.15 -2.35 16 28 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.07 1.75 6.23 -2.39 -0.01 1.74 16 30 H 0.05 1.65 7.81 -2.39 -0.02 1.63 16 31 H 0.04 1.18 6.12 -2.38 -0.01 1.16 16 32 H 0.05 2.11 6.71 -2.39 -0.02 2.09 16 33 H 0.03 1.47 4.91 -2.39 -0.01 1.46 16 34 H -0.02 -0.89 7.26 -2.39 -0.02 -0.90 16 35 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.10 2.56 6.58 -2.39 -0.02 2.54 16 37 H 0.04 1.16 8.07 -2.39 -0.02 1.14 16 38 H 0.13 3.76 7.90 -2.91 -0.02 3.74 16 39 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 40 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.30 6.34 -2.39 -0.02 1.29 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.05 1.26 6.36 -2.38 -0.02 1.24 16 52 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -67.89 390.99 2.85 -65.04 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.82 Total: 24.34 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 5.37 Total: -34.13 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -5.22 Total: -101.05 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -67.89 2.85 -65.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590162388.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.254 kcal (2) G-P(sol) polarization free energy of solvation -67.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds