Wall clock time and date at job start Tue Mar 31 2020 11:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47461 * 2 1 4 4 N 1.46906 * 109.46743 * 119.99698 * 2 1 3 5 5 C 1.46902 * 111.00038 * 72.86292 * 4 2 1 6 6 C 1.53002 * 109.47142 * 75.75911 * 5 4 2 7 7 C 1.50707 * 109.46717 * 174.85428 * 6 5 4 8 8 H 1.07995 * 120.00129 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99516 * 180.27715 * 7 6 5 10 10 N 1.31518 * 120.00194 * 359.72019 * 9 7 6 11 11 Si 1.86796 * 119.99741 * 179.72767 * 9 7 6 12 12 H 1.48502 * 109.47405 * 89.99685 * 11 9 7 13 13 H 1.48506 * 109.46959 * 209.99587 * 11 9 7 14 14 H 1.48501 * 109.47280 * 329.99801 * 11 9 7 15 15 C 1.46897 * 111.00040 * 308.90658 * 4 2 1 16 16 H 1.08997 * 110.27387 * 53.51689 * 15 4 2 17 17 C 1.54599 * 110.30971 * 291.31873 * 15 4 2 18 18 C 1.54936 * 102.92424 * 219.12905 * 17 15 4 19 19 N 1.48533 * 103.22627 * 37.41158 * 18 17 15 20 20 C 1.46899 * 110.99681 * 200.27949 * 19 18 17 21 21 C 1.50696 * 109.47524 * 287.39790 * 20 19 18 22 22 C 1.38234 * 120.00148 * 269.73553 * 21 20 19 23 23 C 1.38241 * 120.00302 * 179.76580 * 22 21 20 24 24 C 1.38235 * 119.99540 * 0.47762 * 23 22 21 25 25 C 1.38237 * 119.99976 * 359.79372 * 24 23 22 26 26 C 1.38230 * 120.00262 * 359.95500 * 25 24 23 27 27 C 1.47899 * 105.82261 * 320.79536 * 19 18 17 28 28 H 1.08999 * 109.47724 * 306.30494 * 1 2 3 29 29 H 1.09006 * 109.47014 * 66.30816 * 1 2 3 30 30 H 1.09002 * 109.47516 * 186.30257 * 1 2 3 31 31 H 1.09002 * 109.47199 * 239.99304 * 2 1 3 32 32 H 1.08998 * 109.47756 * 168.47434 * 3 2 1 33 33 H 1.09007 * 109.46837 * 288.47262 * 3 2 1 34 34 H 1.09000 * 109.47166 * 48.46622 * 3 2 1 35 35 H 1.09000 * 109.46933 * 315.75747 * 5 4 2 36 36 H 1.09000 * 109.47060 * 195.75914 * 5 4 2 37 37 H 1.08997 * 109.47053 * 54.85862 * 6 5 4 38 38 H 1.08994 * 109.47006 * 294.85300 * 6 5 4 39 39 H 0.97003 * 119.99991 * 180.02562 * 10 9 7 40 40 H 1.09001 * 110.72115 * 337.48680 * 17 15 4 41 41 H 1.09003 * 110.72159 * 100.76886 * 17 15 4 42 42 H 1.09003 * 110.66378 * 278.97987 * 18 17 15 43 43 H 1.08996 * 110.80760 * 155.92040 * 18 17 15 44 44 H 1.09001 * 109.47141 * 47.40292 * 20 19 18 45 45 H 1.09007 * 109.46751 * 167.40139 * 20 19 18 46 46 H 1.08003 * 119.99942 * 359.97438 * 22 21 20 47 47 H 1.07990 * 120.00096 * 180.24950 * 23 22 21 48 48 H 1.07996 * 119.99808 * 179.76611 * 24 23 22 49 49 H 1.07997 * 120.00114 * 179.97438 * 25 24 23 50 50 H 1.08005 * 120.00439 * 179.97438 * 26 25 24 51 51 H 1.08996 * 109.91603 * 265.97581 * 27 19 18 52 52 H 1.08998 * 110.08161 * 144.77097 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 1.8140 -2.1430 1.0908 6 6 2.8566 -2.7361 0.1410 7 6 2.7269 -4.2375 0.1271 8 1 1.9762 -4.7203 0.7351 9 6 3.5707 -4.9950 -0.6573 10 7 4.4851 -4.4070 -1.3974 11 14 3.4149 -6.8564 -0.6688 12 1 2.4626 -7.2669 -1.7318 13 1 4.7443 -7.4627 -0.9341 14 1 2.9139 -7.3194 0.6502 15 6 1.3829 -0.1599 2.4115 16 1 0.2979 -0.1852 2.3105 17 6 1.8655 1.2839 2.6809 18 6 2.0158 1.3171 4.2226 19 7 2.5407 -0.0352 4.5421 20 6 2.3035 -0.3724 5.9520 21 6 3.2325 0.4322 6.8242 22 6 4.4758 -0.0711 7.1585 23 6 5.3299 0.6690 7.9546 24 6 4.9367 1.9082 8.4244 25 6 3.6912 2.4090 8.0947 26 6 2.8392 1.6712 7.2944 27 6 1.8237 -0.9681 3.6460 28 1 -0.3634 0.6084 0.8281 29 1 -0.3633 0.4130 -0.9411 30 1 -0.3634 -1.0214 0.1128 31 1 1.8933 -0.5139 -0.8899 32 1 3.1104 1.4494 0.2053 33 1 1.8541 1.8935 -0.9748 34 1 1.5187 2.0121 0.7693 35 1 0.8148 -2.3402 0.7025 36 1 1.9179 -2.5994 2.0752 37 1 3.8552 -2.4609 0.4802 38 1 2.6945 -2.3480 -0.8645 39 1 5.0785 -4.9400 -1.9495 40 1 2.8243 1.4669 2.1959 41 1 1.1204 2.0076 2.3504 42 1 1.0490 1.4771 4.7000 43 1 2.7253 2.0869 4.5260 44 1 1.2704 -0.1418 6.2119 45 1 2.4887 -1.4353 6.1075 46 1 4.7812 -1.0412 6.7950 47 1 6.3027 0.2775 8.2124 48 1 5.6025 2.4847 9.0495 49 1 3.3838 3.3770 8.4621 50 1 1.8659 2.0623 7.0371 51 1 0.9498 -1.3743 4.1554 52 1 2.4861 -1.7786 3.3421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154417.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:00 Heat of formation + Delta-G solvation = 43.707712 kcal Electronic energy + Delta-G solvation = -27085.325364 eV Core-core repulsion = 23663.852710 eV Total energy + Delta-G solvation = -3421.472655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98394 -39.08970 -36.92012 -33.44051 -32.83837 -31.73456 -30.98545 -30.07479 -29.07490 -27.09554 -27.00466 -25.39916 -24.02106 -22.69427 -21.73213 -21.24122 -20.74302 -20.32331 -18.45631 -16.98919 -16.46234 -16.25895 -15.75040 -15.28633 -15.21740 -14.70167 -14.46368 -14.40602 -13.88903 -13.71785 -13.50913 -13.40634 -13.12302 -12.78483 -12.46963 -12.35783 -12.06441 -12.01027 -11.91205 -11.81073 -11.57519 -11.29950 -11.15425 -11.08211 -11.00489 -10.91310 -10.83943 -10.50245 -10.44099 -10.31532 -10.13236 -9.65024 -9.31276 -9.04688 -8.99850 -8.87548 -8.29919 -8.27930 -7.58489 -5.95024 -3.97209 1.24740 1.32611 3.33953 3.40397 3.43305 3.62039 4.20417 4.34916 4.53105 4.63812 4.74532 4.82525 4.90323 4.92857 5.04779 5.14971 5.23688 5.34217 5.40460 5.40922 5.41790 5.48028 5.51742 5.56868 5.59882 5.71920 5.75770 5.89322 5.90225 5.92236 5.95788 5.99065 6.04697 6.09928 6.13900 6.25216 6.32802 6.34985 6.37673 6.42101 6.53188 6.56568 6.63471 6.72687 6.89976 6.96153 7.07328 7.13711 7.60596 7.66915 7.87360 7.99724 8.17193 8.48694 9.10557 9.66082 11.16229 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.003241 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.865182 B = 8638.124737 C =10259.037684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.076 3.924 3 C -0.152 4.152 4 N -0.518 5.518 5 C 0.053 3.947 6 C 0.033 3.967 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.889 3.111 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.072 3.928 16 H 0.045 0.955 17 C -0.115 4.115 18 C 0.034 3.966 19 N -0.501 5.501 20 C 0.082 3.918 21 C -0.069 4.069 22 C -0.097 4.097 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.115 4.115 27 C 0.036 3.964 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.022 0.978 36 H 0.065 0.935 37 H 0.026 0.974 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.036 0.964 43 H 0.079 0.921 44 H 0.041 0.959 45 H 0.083 0.917 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.116 0.884 51 H 0.038 0.962 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 15.129 15.976 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.033 4.033 3 C -0.209 4.209 4 N -0.242 5.242 5 C -0.073 4.073 6 C -0.004 4.004 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.143 4.143 10 N -0.531 5.531 11 Si 0.718 3.282 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.037 4.037 16 H 0.062 0.938 17 C -0.153 4.153 18 C -0.094 4.094 19 N -0.225 5.225 20 C -0.046 4.046 21 C -0.070 4.070 22 C -0.116 4.116 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.133 4.133 27 C -0.091 4.091 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.097 0.903 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.136 0.864 50 H 0.134 0.866 51 H 0.057 0.943 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.120 15.117 15.810 22.259 hybrid contribution -1.829 -1.214 -0.001 2.195 sum -5.949 13.903 15.809 21.877 Atomic orbital electron populations 1.22447 0.98568 1.01822 1.01301 1.21666 0.91835 0.95174 0.94621 1.22244 1.02149 0.95616 1.00884 1.62497 1.56213 1.05295 1.00163 1.22511 0.98979 0.84607 1.01245 1.19023 0.93988 0.94050 0.93375 1.21199 1.17013 0.92013 1.25722 0.92970 1.24980 0.95319 0.98352 0.95607 1.69977 1.20019 1.35267 1.27868 0.86641 0.77302 0.86021 0.78286 1.20802 1.21230 1.19935 1.22430 0.95906 0.94383 0.91003 0.93772 1.22933 1.02604 0.95577 0.94206 1.23316 0.97607 0.92154 0.96340 1.64799 1.53589 1.02253 1.01883 1.21234 0.95774 0.99391 0.88165 1.19740 0.95357 0.94915 0.96976 1.21092 0.93213 1.00261 0.97032 1.21164 0.99599 0.94980 0.98181 1.21119 0.96505 0.96209 1.00492 1.21073 0.94491 0.99721 0.98898 1.21023 0.99701 0.94409 0.98179 1.23171 0.97193 0.96563 0.92198 0.93057 0.92656 0.92396 0.89263 0.91625 0.93393 0.92148 0.96022 0.91641 0.95604 0.96880 0.93068 0.88839 0.91498 0.94546 0.90307 0.94046 0.89856 0.85794 0.86151 0.86414 0.86395 0.86616 0.94347 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 8.26 37.15 0.31 -2.28 16 2 C 0.08 1.22 2.81 -67.72 -0.19 1.03 16 3 C -0.15 -2.06 7.80 37.15 0.29 -1.77 16 4 N -0.52 -9.13 4.27 -217.11 -0.93 -10.06 16 5 C 0.05 1.10 4.53 -3.82 -0.02 1.08 16 6 C 0.03 0.86 5.01 -27.88 -0.14 0.72 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 11 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.07 1.06 2.28 -66.35 -0.15 0.91 16 16 H 0.04 0.64 6.00 -51.93 -0.31 0.33 16 17 C -0.12 -1.46 4.56 -24.87 -0.11 -1.58 16 18 C 0.03 0.40 5.68 -1.90 -0.01 0.39 16 19 N -0.50 -6.78 5.23 -231.89 -1.21 -7.99 16 20 C 0.08 0.95 4.86 -4.98 -0.02 0.93 16 21 C -0.07 -0.79 5.16 -104.63 -0.54 -1.33 16 22 C -0.10 -1.11 9.70 -39.58 -0.38 -1.49 16 23 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 26 C -0.11 -1.17 8.83 -39.58 -0.35 -1.52 16 27 C 0.04 0.53 5.64 -2.75 -0.02 0.51 16 28 H 0.05 0.66 6.51 -51.93 -0.34 0.32 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.90 6.44 -51.93 -0.33 0.56 16 31 H 0.09 1.68 6.66 -51.93 -0.35 1.34 16 32 H 0.06 0.96 7.50 -51.93 -0.39 0.57 16 33 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.06 0.72 4.68 -51.93 -0.24 0.48 16 35 H 0.02 0.45 6.28 -51.93 -0.33 0.12 16 36 H 0.07 1.34 5.37 -51.93 -0.28 1.06 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.01 0.36 6.93 -51.93 -0.36 0.00 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.09 1.33 6.37 -51.93 -0.33 1.00 16 41 H 0.07 0.74 6.66 -51.93 -0.35 0.39 16 42 H 0.04 0.39 7.81 -51.93 -0.41 -0.01 16 43 H 0.08 0.93 7.84 -51.93 -0.41 0.53 16 44 H 0.04 0.44 7.77 -51.93 -0.40 0.04 16 45 H 0.08 0.96 8.02 -51.92 -0.42 0.54 16 46 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 49 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 50 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 51 H 0.04 0.52 7.77 -51.93 -0.40 0.11 16 52 H 0.10 1.80 5.87 -51.93 -0.30 1.49 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -30.35 388.73 -12.38 -42.73 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.87 Total: 1.59 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.94 Total: -22.58 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -1.41 Total: -44.35 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.35 -12.38 -42.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154417.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.441 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds