Wall clock time and date at job start Tue Mar 31 2020 11:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47461 * 2 1 4 4 N 1.46906 * 109.46743 * 119.99698 * 2 1 3 5 5 C 1.46902 * 111.00038 * 72.86292 * 4 2 1 6 6 C 1.53002 * 109.47142 * 75.75911 * 5 4 2 7 7 C 1.50707 * 109.46717 * 174.85428 * 6 5 4 8 8 H 1.07995 * 120.00129 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99516 * 180.27715 * 7 6 5 10 10 N 1.31518 * 120.00194 * 359.72019 * 9 7 6 11 11 Si 1.86796 * 119.99741 * 179.72767 * 9 7 6 12 12 H 1.48502 * 109.47405 * 89.99685 * 11 9 7 13 13 H 1.48506 * 109.46959 * 209.99587 * 11 9 7 14 14 H 1.48501 * 109.47280 * 329.99801 * 11 9 7 15 15 C 1.46897 * 111.00040 * 308.90658 * 4 2 1 16 16 H 1.08997 * 110.27387 * 53.51689 * 15 4 2 17 17 C 1.54599 * 110.30971 * 291.31873 * 15 4 2 18 18 C 1.54936 * 102.92424 * 219.12905 * 17 15 4 19 19 N 1.48533 * 103.22627 * 37.41158 * 18 17 15 20 20 C 1.46899 * 110.99681 * 200.27949 * 19 18 17 21 21 C 1.50696 * 109.47524 * 287.39790 * 20 19 18 22 22 C 1.38234 * 120.00148 * 269.73553 * 21 20 19 23 23 C 1.38241 * 120.00302 * 179.76580 * 22 21 20 24 24 C 1.38235 * 119.99540 * 0.47762 * 23 22 21 25 25 C 1.38237 * 119.99976 * 359.79372 * 24 23 22 26 26 C 1.38230 * 120.00262 * 359.95500 * 25 24 23 27 27 C 1.47899 * 105.82261 * 320.79536 * 19 18 17 28 28 H 1.08999 * 109.47724 * 306.30494 * 1 2 3 29 29 H 1.09006 * 109.47014 * 66.30816 * 1 2 3 30 30 H 1.09002 * 109.47516 * 186.30257 * 1 2 3 31 31 H 1.09002 * 109.47199 * 239.99304 * 2 1 3 32 32 H 1.08998 * 109.47756 * 168.47434 * 3 2 1 33 33 H 1.09007 * 109.46837 * 288.47262 * 3 2 1 34 34 H 1.09000 * 109.47166 * 48.46622 * 3 2 1 35 35 H 1.09000 * 109.46933 * 315.75747 * 5 4 2 36 36 H 1.09000 * 109.47060 * 195.75914 * 5 4 2 37 37 H 1.08997 * 109.47053 * 54.85862 * 6 5 4 38 38 H 1.08994 * 109.47006 * 294.85300 * 6 5 4 39 39 H 0.97003 * 119.99991 * 180.02562 * 10 9 7 40 40 H 1.09001 * 110.72115 * 337.48680 * 17 15 4 41 41 H 1.09003 * 110.72159 * 100.76886 * 17 15 4 42 42 H 1.09003 * 110.66378 * 278.97987 * 18 17 15 43 43 H 1.08996 * 110.80760 * 155.92040 * 18 17 15 44 44 H 1.09001 * 109.47141 * 47.40292 * 20 19 18 45 45 H 1.09007 * 109.46751 * 167.40139 * 20 19 18 46 46 H 1.08003 * 119.99942 * 359.97438 * 22 21 20 47 47 H 1.07990 * 120.00096 * 180.24950 * 23 22 21 48 48 H 1.07996 * 119.99808 * 179.76611 * 24 23 22 49 49 H 1.07997 * 120.00114 * 179.97438 * 25 24 23 50 50 H 1.08005 * 120.00439 * 179.97438 * 26 25 24 51 51 H 1.08996 * 109.91603 * 265.97581 * 27 19 18 52 52 H 1.08998 * 110.08161 * 144.77097 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 1.8140 -2.1430 1.0908 6 6 2.8566 -2.7361 0.1410 7 6 2.7269 -4.2375 0.1271 8 1 1.9762 -4.7203 0.7351 9 6 3.5707 -4.9950 -0.6573 10 7 4.4851 -4.4070 -1.3974 11 14 3.4149 -6.8564 -0.6688 12 1 2.4626 -7.2669 -1.7318 13 1 4.7443 -7.4627 -0.9341 14 1 2.9139 -7.3194 0.6502 15 6 1.3829 -0.1599 2.4115 16 1 0.2979 -0.1852 2.3105 17 6 1.8655 1.2839 2.6809 18 6 2.0158 1.3171 4.2226 19 7 2.5407 -0.0352 4.5421 20 6 2.3035 -0.3724 5.9520 21 6 3.2325 0.4322 6.8242 22 6 4.4758 -0.0711 7.1585 23 6 5.3299 0.6690 7.9546 24 6 4.9367 1.9082 8.4244 25 6 3.6912 2.4090 8.0947 26 6 2.8392 1.6712 7.2944 27 6 1.8237 -0.9681 3.6460 28 1 -0.3634 0.6084 0.8281 29 1 -0.3633 0.4130 -0.9411 30 1 -0.3634 -1.0214 0.1128 31 1 1.8933 -0.5139 -0.8899 32 1 3.1104 1.4494 0.2053 33 1 1.8541 1.8935 -0.9748 34 1 1.5187 2.0121 0.7693 35 1 0.8148 -2.3402 0.7025 36 1 1.9179 -2.5994 2.0752 37 1 3.8552 -2.4609 0.4802 38 1 2.6945 -2.3480 -0.8645 39 1 5.0785 -4.9400 -1.9495 40 1 2.8243 1.4669 2.1959 41 1 1.1204 2.0076 2.3504 42 1 1.0490 1.4771 4.7000 43 1 2.7253 2.0869 4.5260 44 1 1.2704 -0.1418 6.2119 45 1 2.4887 -1.4353 6.1075 46 1 4.7812 -1.0412 6.7950 47 1 6.3027 0.2775 8.2124 48 1 5.6025 2.4847 9.0495 49 1 3.3838 3.3770 8.4621 50 1 1.8659 2.0623 7.0371 51 1 0.9498 -1.3743 4.1554 52 1 2.4861 -1.7786 3.3421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592154417.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:00 Heat of formation + Delta-G solvation = 26.186866 kcal Electronic energy + Delta-G solvation = -27086.085125 eV Core-core repulsion = 23663.852710 eV Total energy + Delta-G solvation = -3422.232416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.07492 -40.00628 -38.06881 -35.44564 -33.79604 -33.39426 -31.73818 -31.13761 -30.60749 -28.42959 -28.12903 -26.57274 -25.73597 -23.48027 -23.04826 -22.49286 -21.85101 -21.45832 -19.84437 -18.56034 -17.84497 -17.24503 -17.00427 -16.50194 -16.15781 -16.09946 -16.04636 -15.55130 -15.02638 -14.87087 -14.64530 -14.29072 -14.20322 -14.07023 -13.94946 -13.59839 -13.44942 -13.21403 -13.13179 -12.92953 -12.83478 -12.79553 -12.66101 -12.37435 -12.27911 -12.27351 -11.87955 -11.75739 -11.69582 -11.61619 -11.49830 -11.38832 -11.13015 -11.02874 -10.51075 -9.76125 -9.67666 -9.28271 -8.98161 -8.18472 -6.29785 0.47683 0.56357 1.38856 1.40752 1.51701 2.40262 2.79977 3.05825 3.14583 3.27936 3.63193 3.81088 3.95580 3.97507 4.02962 4.21117 4.21431 4.31031 4.32136 4.36623 4.38548 4.42033 4.51962 4.53228 4.61278 4.64010 4.70750 4.75412 4.78911 4.81372 4.82808 4.94523 4.99374 5.01975 5.05106 5.14968 5.17288 5.20618 5.21727 5.31935 5.38723 5.47485 5.51669 5.61092 5.67414 5.71624 5.75879 5.83612 5.97143 6.10801 6.18325 6.20131 6.41922 6.50846 6.88219 7.39120 8.93673 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.003241 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.865182 B = 8638.124737 C =10259.037684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.142 4.142 4 N -0.533 5.533 5 C 0.072 3.928 6 C 0.045 3.955 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.964 3.036 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.262 1.262 15 C 0.073 3.927 16 H 0.057 0.943 17 C -0.109 4.109 18 C 0.041 3.959 19 N -0.521 5.521 20 C 0.086 3.914 21 C -0.084 4.084 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.119 4.119 27 C 0.040 3.960 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.023 0.977 36 H 0.067 0.933 37 H -0.013 1.013 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.114 0.886 47 H 0.133 0.867 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.131 0.869 51 H 0.051 0.949 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 16.603 17.670 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.037 4.037 3 C -0.199 4.199 4 N -0.257 5.257 5 C -0.055 4.055 6 C 0.007 3.993 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.197 4.197 10 N -0.572 5.572 11 Si 0.789 3.211 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.187 1.187 15 C -0.036 4.036 16 H 0.075 0.925 17 C -0.147 4.147 18 C -0.086 4.086 19 N -0.245 5.245 20 C -0.042 4.042 21 C -0.084 4.084 22 C -0.139 4.139 23 C -0.149 4.149 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.137 4.137 27 C -0.088 4.088 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.005 0.995 38 H 0.004 0.996 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.132 0.868 47 H 0.151 0.849 48 H 0.159 0.841 49 H 0.161 0.839 50 H 0.149 0.851 51 H 0.070 0.930 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.865 16.608 17.516 24.840 hybrid contribution -1.222 -1.612 -0.504 2.085 sum -7.088 14.997 17.012 23.760 Atomic orbital electron populations 1.22347 0.96455 1.01320 1.03067 1.21686 0.93559 0.96065 0.92436 1.22167 1.01197 0.93936 1.02582 1.62380 1.57715 1.03467 1.02124 1.22082 0.96849 0.86932 0.99616 1.18811 0.93614 0.93762 0.93068 1.21632 1.17269 0.93262 1.25855 0.92290 1.25963 0.94762 1.03992 0.94996 1.70126 1.20940 1.37455 1.28681 0.85463 0.77540 0.79188 0.78941 1.19726 1.20778 1.18667 1.22522 0.96322 0.95528 0.89219 0.92502 1.22893 1.02350 0.94509 0.94918 1.23298 0.98639 0.91116 0.95591 1.64723 1.54164 1.02878 1.02741 1.21206 0.96686 0.99106 0.87159 1.19788 0.95346 0.95719 0.97590 1.21199 0.94025 1.00461 0.98194 1.21398 1.00053 0.95478 0.98013 1.21458 0.97036 0.95909 1.00258 1.21425 0.94212 1.00573 0.98179 1.21228 1.00547 0.93872 0.98090 1.22998 0.96847 0.96070 0.92843 0.90791 0.91175 0.94118 0.93238 0.93323 0.91950 0.89728 0.95932 0.91517 0.99463 0.99643 0.92857 0.90637 0.88819 0.92445 0.90030 0.92621 0.90752 0.86752 0.84910 0.84116 0.83908 0.85087 0.93045 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.65 8.26 71.98 0.59 -4.06 16 2 C 0.07 2.32 2.81 44.91 0.13 2.45 16 3 C -0.14 -3.70 7.80 71.98 0.56 -3.14 16 4 N -0.53 -19.28 4.27 -840.79 -3.59 -22.87 16 5 C 0.07 3.14 4.53 86.30 0.39 3.53 16 6 C 0.04 2.49 5.01 29.85 0.15 2.64 16 7 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.00 0.04 5.46 84.65 0.46 0.50 16 10 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16 11 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 15 C 0.07 2.06 2.28 45.80 0.10 2.16 16 16 H 0.06 1.49 6.00 -2.39 -0.01 1.48 16 17 C -0.11 -2.52 4.56 31.80 0.15 -2.38 16 18 C 0.04 0.88 5.68 86.65 0.49 1.37 16 19 N -0.52 -13.75 5.23 -887.58 -4.65 -18.39 16 20 C 0.09 1.93 4.86 85.56 0.42 2.35 16 21 C -0.08 -1.84 5.16 -19.87 -0.10 -1.94 16 22 C -0.12 -2.75 9.70 22.27 0.22 -2.53 16 23 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 24 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 25 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 26 C -0.12 -2.16 8.83 22.27 0.20 -1.96 16 27 C 0.04 1.18 5.64 86.45 0.49 1.66 16 28 H 0.07 1.65 6.51 -2.39 -0.02 1.63 16 29 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.04 1.22 6.44 -2.39 -0.02 1.21 16 31 H 0.05 1.99 6.66 -2.39 -0.02 1.97 16 32 H 0.05 1.43 7.50 -2.39 -0.02 1.41 16 33 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.08 1.78 4.68 -2.39 -0.01 1.77 16 35 H 0.02 0.96 6.28 -2.39 -0.01 0.95 16 36 H 0.07 2.86 5.37 -2.39 -0.01 2.84 16 37 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 38 H -0.01 -0.89 6.93 -2.39 -0.02 -0.90 16 39 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.08 2.07 6.37 -2.39 -0.02 2.05 16 41 H 0.09 1.68 6.66 -2.39 -0.02 1.66 16 42 H 0.06 1.01 7.81 -2.39 -0.02 0.99 16 43 H 0.08 1.73 7.84 -2.39 -0.02 1.71 16 44 H 0.06 1.08 7.77 -2.39 -0.02 1.06 16 45 H 0.07 1.75 8.02 -2.38 -0.02 1.73 16 46 H 0.11 2.69 8.06 -2.91 -0.02 2.67 16 47 H 0.13 2.11 8.06 -2.92 -0.02 2.09 16 48 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 49 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 50 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 51 H 0.05 1.34 7.77 -2.39 -0.02 1.32 16 52 H 0.07 2.45 5.87 -2.39 -0.01 2.44 16 Total: -1.00 -68.79 388.73 0.09 -68.70 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.88 Total: 20.41 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 5.14 Total: -36.91 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -7.95 Total: -99.50 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.79 0.09 -68.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154417.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.882 kcal (2) G-P(sol) polarization free energy of solvation -68.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds