Wall clock time and date at job start Tue Mar 31 2020 11:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47181 * 2 1 4 4 N 1.46897 * 109.47713 * 120.00329 * 2 1 3 5 5 C 1.46897 * 110.99946 * 68.74300 * 4 2 1 6 6 C 1.52997 * 109.47277 * 66.04879 * 5 4 2 7 7 C 1.50702 * 109.47308 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00089 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00023 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00063 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99933 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47174 * 59.99847 * 11 9 7 13 13 H 1.48505 * 109.47160 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47223 * 299.99500 * 11 9 7 15 15 C 1.46897 * 110.99662 * 304.78895 * 4 2 1 16 16 H 1.08997 * 110.29285 * 315.54723 * 15 4 2 17 17 C 1.54260 * 110.32219 * 77.67657 * 15 4 2 18 18 C 1.54388 * 105.06179 * 118.89621 * 17 15 4 19 19 N 1.48559 * 104.59413 * 23.84718 * 18 17 15 20 20 C 1.46897 * 111.00323 * 200.95971 * 19 18 17 21 21 C 1.50696 * 109.47129 * 290.13373 * 20 19 18 22 22 C 1.38238 * 119.99838 * 269.71994 * 21 20 19 23 23 C 1.38231 * 119.99890 * 179.76602 * 22 21 20 24 24 C 1.38237 * 120.00296 * 0.50942 * 23 22 21 25 25 C 1.38233 * 119.99637 * 359.74848 * 24 23 22 26 26 C 1.38232 * 120.00225 * 359.97438 * 25 24 23 27 27 C 1.48562 * 104.22500 * 320.52021 * 19 18 17 28 28 H 1.09005 * 109.46842 * 305.41693 * 1 2 3 29 29 H 1.08992 * 109.47714 * 65.42490 * 1 2 3 30 30 H 1.09007 * 109.46969 * 185.42280 * 1 2 3 31 31 H 1.09001 * 109.46997 * 240.00805 * 2 1 3 32 32 H 1.09000 * 109.47659 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47335 * 300.00695 * 3 2 1 34 34 H 1.08998 * 109.46730 * 60.00028 * 3 2 1 35 35 H 1.09002 * 109.47167 * 186.04612 * 5 4 2 36 36 H 1.09006 * 109.47314 * 306.05070 * 5 4 2 37 37 H 1.09003 * 109.47318 * 299.99868 * 6 5 4 38 38 H 1.08996 * 109.47536 * 59.99844 * 6 5 4 39 39 H 0.96998 * 119.99972 * 179.97438 * 10 9 7 40 40 H 1.09003 * 110.32636 * 237.78425 * 17 15 4 41 41 H 1.09003 * 110.32679 * 359.97438 * 17 15 4 42 42 H 1.08998 * 110.41305 * 142.62887 * 18 17 15 43 43 H 1.09000 * 110.40901 * 264.95544 * 18 17 15 44 44 H 1.09009 * 109.46736 * 50.12920 * 20 19 18 45 45 H 1.08997 * 109.47394 * 170.12486 * 20 19 18 46 46 H 1.07997 * 120.00025 * 0.02562 * 22 21 20 47 47 H 1.08000 * 119.99847 * 180.23259 * 23 22 21 48 48 H 1.08000 * 120.00210 * 179.71990 * 24 23 22 49 49 H 1.08001 * 119.99733 * 179.97438 * 25 24 23 50 50 H 1.08003 * 119.99972 * 179.97438 * 26 25 24 51 51 H 1.08991 * 110.41341 * 280.70595 * 27 19 18 52 52 H 1.09004 * 110.41032 * 158.25616 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 1.7265 -2.1304 1.1336 6 6 2.5290 -2.7630 -0.0052 7 6 2.2277 -4.2381 -0.0730 8 1 1.5336 -4.6802 0.6264 9 6 2.8389 -5.0234 -1.0274 10 7 3.6845 -4.4851 -1.8788 11 14 2.4660 -6.8518 -1.1110 12 1 1.0152 -7.0503 -1.3585 13 1 3.2448 -7.4658 -2.2164 14 1 2.8411 -7.4928 0.1748 15 6 1.4576 -0.0958 2.4182 16 1 1.4994 0.9919 2.3606 17 6 0.0027 -0.5659 2.6230 18 6 0.0090 -1.3132 3.9739 19 7 1.1743 -0.7537 4.7058 20 6 1.6191 -1.6685 5.7656 21 6 0.5904 -1.7001 6.8664 22 6 0.6804 -0.8122 7.9221 23 6 -0.2660 -0.8379 8.9294 24 6 -1.2963 -1.7585 8.8864 25 6 -1.3832 -2.6499 7.8335 26 6 -0.4402 -2.6204 6.8233 27 6 2.2206 -0.5987 3.6625 28 1 -0.3633 0.5956 0.8376 29 1 -0.3634 0.4273 -0.9345 30 1 -0.3633 -1.0231 0.0971 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.0022 -2.6010 2.0773 36 1 0.6616 -2.2762 0.9522 37 1 2.2534 -2.2925 -0.9490 38 1 3.5938 -2.6173 0.1760 39 1 4.1148 -5.0376 -2.5499 40 1 -0.6694 0.2911 2.6677 41 1 -0.2944 -1.2391 1.8188 42 1 -0.9133 -1.1175 4.5209 43 1 0.1360 -2.3841 3.8153 44 1 1.7410 -2.6703 5.3533 45 1 2.5714 -1.3230 6.1679 46 1 1.4876 -0.0956 7.9578 47 1 -0.1978 -0.1417 9.7522 48 1 -2.0331 -1.7815 9.6757 49 1 -2.1880 -3.3694 7.8002 50 1 -0.5079 -3.3171 6.0008 51 1 2.6957 -1.5575 3.4553 52 1 2.9635 0.1351 3.9752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154418.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:03 Heat of formation + Delta-G solvation = 42.079432 kcal Electronic energy + Delta-G solvation = -27358.969661 eV Core-core repulsion = 23937.426398 eV Total energy + Delta-G solvation = -3421.543262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.17204 -39.19234 -36.84653 -33.34208 -32.89576 -31.35083 -31.00667 -30.03971 -29.36948 -27.30265 -26.83335 -25.32414 -24.07211 -22.69895 -21.72416 -21.36248 -20.79909 -20.47119 -18.16548 -16.88445 -16.52601 -16.10223 -15.65406 -15.32832 -15.27696 -14.94232 -14.57285 -14.42822 -13.89667 -13.60780 -13.52536 -13.42649 -13.08415 -12.74690 -12.40173 -12.24462 -12.17808 -12.16781 -12.00845 -11.71243 -11.55452 -11.40126 -11.08275 -11.01633 -10.96262 -10.89711 -10.85951 -10.57519 -10.45499 -10.37763 -10.14049 -9.67898 -9.32971 -9.11920 -9.01947 -8.90842 -8.38246 -8.31465 -7.64147 -6.00571 -4.03049 1.23155 1.30550 3.31506 3.36381 3.38230 3.60306 4.12845 4.41835 4.54354 4.67008 4.76037 4.83415 4.88458 4.99413 5.09993 5.12143 5.25306 5.35150 5.37883 5.42790 5.50136 5.54466 5.54934 5.57328 5.67492 5.74625 5.85111 5.87861 5.90489 5.93489 5.96459 5.97853 6.07229 6.13210 6.14925 6.25109 6.32603 6.33917 6.39316 6.41598 6.47086 6.53845 6.64388 6.70965 6.85539 6.90021 7.00623 7.06887 7.55003 7.64128 7.82022 7.91198 8.08773 8.42730 9.04060 9.60566 11.10626 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011469 B = 0.003521 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.692362 B = 7949.928923 C = 9648.068766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.073 3.927 3 C -0.141 4.141 4 N -0.524 5.524 5 C 0.059 3.941 6 C 0.030 3.970 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.060 3.940 10 N -0.892 5.892 11 Si 0.890 3.110 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.081 3.919 16 H 0.087 0.913 17 C -0.165 4.165 18 C 0.035 3.965 19 N -0.505 5.505 20 C 0.079 3.921 21 C -0.069 4.069 22 C -0.101 4.101 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.113 4.113 27 C 0.039 3.961 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.017 0.983 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.048 0.952 45 H 0.083 0.917 46 H 0.122 0.878 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.059 0.941 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 10.074 16.544 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.035 4.035 3 C -0.198 4.198 4 N -0.247 5.247 5 C -0.068 4.068 6 C -0.008 4.008 7 C -0.561 4.561 8 H 0.069 0.931 9 C -0.142 4.142 10 N -0.531 5.531 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.029 4.029 16 H 0.105 0.895 17 C -0.204 4.204 18 C -0.093 4.093 19 N -0.229 5.229 20 C -0.048 4.048 21 C -0.070 4.070 22 C -0.119 4.119 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.140 4.140 26 C -0.131 4.131 27 C -0.089 4.089 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.101 0.899 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.078 0.922 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.549 10.592 16.660 21.136 hybrid contribution -0.947 -2.014 -0.460 2.272 sum -8.497 8.578 16.200 20.204 Atomic orbital electron populations 1.22792 0.98366 1.02004 1.01543 1.21708 0.92226 0.94814 0.94767 1.21852 1.01793 0.95497 1.00674 1.62435 1.57539 1.04326 1.00354 1.22399 0.98177 0.84961 1.01216 1.19080 0.95644 0.94084 0.91949 1.21140 1.25703 0.93664 1.15603 0.93055 1.24974 0.95119 0.98409 0.95669 1.69958 1.28710 1.35752 1.18705 0.86698 0.78324 0.85590 0.77614 1.20318 1.21252 1.20275 1.22405 0.90878 0.99299 0.90269 0.89522 1.23438 0.99045 1.00681 0.97238 1.23115 0.94742 0.97188 0.94279 1.65456 1.05541 1.42654 1.09249 1.21216 0.96411 0.95786 0.91435 1.19761 0.96210 0.95575 0.95436 1.21025 0.99089 0.98078 0.93736 1.21128 0.95171 0.98990 0.98877 1.21118 0.98531 0.96192 0.98528 1.21113 0.99038 0.99239 0.94592 1.21121 0.94563 0.98770 0.98659 1.23153 0.94097 1.01422 0.90183 0.92273 0.93053 0.92007 0.88782 0.92002 0.92899 0.93184 0.92494 0.95474 0.96487 0.95903 0.92948 0.91600 0.89332 0.90820 0.93793 0.93393 0.89884 0.86047 0.86287 0.86415 0.86266 0.86295 0.92248 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 7.57 37.16 0.28 -2.45 16 2 C 0.07 1.18 2.80 -67.71 -0.19 0.99 16 3 C -0.14 -1.90 9.14 37.16 0.34 -1.56 16 4 N -0.52 -9.02 4.46 -217.08 -0.97 -9.99 16 5 C 0.06 1.19 3.88 -3.83 -0.01 1.18 16 6 C 0.03 0.76 4.92 -27.88 -0.14 0.62 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 11 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 C 0.08 1.18 2.65 -66.33 -0.18 1.00 16 16 H 0.09 1.21 5.94 -51.93 -0.31 0.90 16 17 C -0.16 -2.27 4.09 -25.34 -0.10 -2.37 16 18 C 0.03 0.47 5.47 -2.18 -0.01 0.45 16 19 N -0.51 -6.62 5.36 -231.40 -1.24 -7.86 16 20 C 0.08 0.96 4.97 -4.98 -0.02 0.93 16 21 C -0.07 -0.80 5.10 -104.62 -0.53 -1.33 16 22 C -0.10 -1.06 9.70 -39.58 -0.38 -1.45 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 24 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 26 C -0.11 -1.26 8.73 -39.58 -0.35 -1.61 16 27 C 0.04 0.55 5.94 -2.18 -0.01 0.54 16 28 H 0.06 0.78 5.41 -51.93 -0.28 0.50 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.99 5.41 -51.93 -0.28 0.71 16 31 H 0.09 1.79 6.12 -51.93 -0.32 1.47 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.62 6.26 -51.93 -0.33 0.30 16 35 H 0.06 1.18 6.33 -51.93 -0.33 0.85 16 36 H 0.03 0.55 4.78 -51.93 -0.25 0.30 16 37 H 0.02 0.46 6.39 -51.93 -0.33 0.13 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.07 0.84 7.38 -51.93 -0.38 0.46 16 41 H 0.09 1.34 3.61 -51.93 -0.19 1.16 16 42 H 0.07 0.96 7.81 -51.93 -0.41 0.55 16 43 H 0.04 0.63 7.83 -51.93 -0.41 0.22 16 44 H 0.05 0.61 7.83 -51.92 -0.41 0.21 16 45 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 49 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 50 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 51 H 0.06 0.96 6.23 -51.93 -0.32 0.63 16 52 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 386.09 15.07 5.82 5.82 Total: -1.00 -29.41 386.09 -12.32 -41.72 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.72 Total: 2.81 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -2.92 Total: -23.11 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -1.47 Total: -43.78 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.41 -12.32 -41.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154418.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.801 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds