Wall clock time and date at job start Tue Mar 31 2020 11:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47181 * 2 1 4 4 N 1.46897 * 109.47713 * 120.00329 * 2 1 3 5 5 C 1.46897 * 110.99946 * 68.74300 * 4 2 1 6 6 C 1.52997 * 109.47277 * 66.04879 * 5 4 2 7 7 C 1.50702 * 109.47308 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00089 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00023 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00063 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99933 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47174 * 59.99847 * 11 9 7 13 13 H 1.48505 * 109.47160 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47223 * 299.99500 * 11 9 7 15 15 C 1.46897 * 110.99662 * 304.78895 * 4 2 1 16 16 H 1.08997 * 110.29285 * 315.54723 * 15 4 2 17 17 C 1.54260 * 110.32219 * 77.67657 * 15 4 2 18 18 C 1.54388 * 105.06179 * 118.89621 * 17 15 4 19 19 N 1.48559 * 104.59413 * 23.84718 * 18 17 15 20 20 C 1.46897 * 111.00323 * 200.95971 * 19 18 17 21 21 C 1.50696 * 109.47129 * 290.13373 * 20 19 18 22 22 C 1.38238 * 119.99838 * 269.71994 * 21 20 19 23 23 C 1.38231 * 119.99890 * 179.76602 * 22 21 20 24 24 C 1.38237 * 120.00296 * 0.50942 * 23 22 21 25 25 C 1.38233 * 119.99637 * 359.74848 * 24 23 22 26 26 C 1.38232 * 120.00225 * 359.97438 * 25 24 23 27 27 C 1.48562 * 104.22500 * 320.52021 * 19 18 17 28 28 H 1.09005 * 109.46842 * 305.41693 * 1 2 3 29 29 H 1.08992 * 109.47714 * 65.42490 * 1 2 3 30 30 H 1.09007 * 109.46969 * 185.42280 * 1 2 3 31 31 H 1.09001 * 109.46997 * 240.00805 * 2 1 3 32 32 H 1.09000 * 109.47659 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47335 * 300.00695 * 3 2 1 34 34 H 1.08998 * 109.46730 * 60.00028 * 3 2 1 35 35 H 1.09002 * 109.47167 * 186.04612 * 5 4 2 36 36 H 1.09006 * 109.47314 * 306.05070 * 5 4 2 37 37 H 1.09003 * 109.47318 * 299.99868 * 6 5 4 38 38 H 1.08996 * 109.47536 * 59.99844 * 6 5 4 39 39 H 0.96998 * 119.99972 * 179.97438 * 10 9 7 40 40 H 1.09003 * 110.32636 * 237.78425 * 17 15 4 41 41 H 1.09003 * 110.32679 * 359.97438 * 17 15 4 42 42 H 1.08998 * 110.41305 * 142.62887 * 18 17 15 43 43 H 1.09000 * 110.40901 * 264.95544 * 18 17 15 44 44 H 1.09009 * 109.46736 * 50.12920 * 20 19 18 45 45 H 1.08997 * 109.47394 * 170.12486 * 20 19 18 46 46 H 1.07997 * 120.00025 * 0.02562 * 22 21 20 47 47 H 1.08000 * 119.99847 * 180.23259 * 23 22 21 48 48 H 1.08000 * 120.00210 * 179.71990 * 24 23 22 49 49 H 1.08001 * 119.99733 * 179.97438 * 25 24 23 50 50 H 1.08003 * 119.99972 * 179.97438 * 26 25 24 51 51 H 1.08991 * 110.41341 * 280.70595 * 27 19 18 52 52 H 1.09004 * 110.41032 * 158.25616 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 1.7265 -2.1304 1.1336 6 6 2.5290 -2.7630 -0.0052 7 6 2.2277 -4.2381 -0.0730 8 1 1.5336 -4.6802 0.6264 9 6 2.8389 -5.0234 -1.0274 10 7 3.6845 -4.4851 -1.8788 11 14 2.4660 -6.8518 -1.1110 12 1 1.0152 -7.0503 -1.3585 13 1 3.2448 -7.4658 -2.2164 14 1 2.8411 -7.4928 0.1748 15 6 1.4576 -0.0958 2.4182 16 1 1.4994 0.9919 2.3606 17 6 0.0027 -0.5659 2.6230 18 6 0.0090 -1.3132 3.9739 19 7 1.1743 -0.7537 4.7058 20 6 1.6191 -1.6685 5.7656 21 6 0.5904 -1.7001 6.8664 22 6 0.6804 -0.8122 7.9221 23 6 -0.2660 -0.8379 8.9294 24 6 -1.2963 -1.7585 8.8864 25 6 -1.3832 -2.6499 7.8335 26 6 -0.4402 -2.6204 6.8233 27 6 2.2206 -0.5987 3.6625 28 1 -0.3633 0.5956 0.8376 29 1 -0.3634 0.4273 -0.9345 30 1 -0.3633 -1.0231 0.0971 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.0022 -2.6010 2.0773 36 1 0.6616 -2.2762 0.9522 37 1 2.2534 -2.2925 -0.9490 38 1 3.5938 -2.6173 0.1760 39 1 4.1148 -5.0376 -2.5499 40 1 -0.6694 0.2911 2.6677 41 1 -0.2944 -1.2391 1.8188 42 1 -0.9133 -1.1175 4.5209 43 1 0.1360 -2.3841 3.8153 44 1 1.7410 -2.6703 5.3533 45 1 2.5714 -1.3230 6.1679 46 1 1.4876 -0.0956 7.9578 47 1 -0.1978 -0.1417 9.7522 48 1 -2.0331 -1.7815 9.6757 49 1 -2.1880 -3.3694 7.8002 50 1 -0.5079 -3.3171 6.0008 51 1 2.6957 -1.5575 3.4553 52 1 2.9635 0.1351 3.9752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592154418.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:02 Heat of formation + Delta-G solvation = 25.417221 kcal Electronic energy + Delta-G solvation = -27359.692188 eV Core-core repulsion = 23937.426398 eV Total energy + Delta-G solvation = -3422.265790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.35557 -40.08288 -38.00834 -35.39986 -33.88816 -32.99661 -31.76920 -31.20402 -30.70829 -28.72672 -28.01059 -26.53835 -25.73974 -23.47616 -23.16132 -22.63820 -21.96736 -21.54563 -19.53497 -18.61084 -17.63331 -17.34435 -16.91372 -16.51878 -16.42504 -16.11757 -16.02450 -15.85339 -14.98576 -14.80054 -14.75467 -14.25746 -14.16541 -14.10918 -13.84059 -13.68755 -13.45087 -13.30128 -13.27283 -13.03460 -12.87746 -12.72113 -12.57004 -12.46068 -12.34424 -12.16050 -11.91592 -11.81691 -11.74006 -11.66728 -11.49595 -11.46634 -11.15390 -11.05834 -10.51898 -9.80073 -9.74169 -9.42338 -9.04852 -8.21159 -6.32294 0.44739 0.53923 1.37178 1.39921 1.47857 2.37874 2.72048 3.03027 3.11954 3.34174 3.68270 3.72246 3.89833 3.98280 4.00887 4.17877 4.23193 4.26563 4.29393 4.33991 4.36817 4.42924 4.44589 4.57631 4.60726 4.62572 4.67497 4.72789 4.76778 4.79236 4.88628 4.90106 4.95906 5.01775 5.09317 5.12134 5.13230 5.18955 5.19552 5.28565 5.32638 5.41661 5.49396 5.58051 5.64898 5.67720 5.71206 5.78521 5.83436 5.97540 6.14687 6.15768 6.38382 6.45793 6.84913 7.36563 8.90586 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011469 B = 0.003521 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.692362 B = 7949.928923 C = 9648.068766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.069 3.931 3 C -0.132 4.132 4 N -0.533 5.533 5 C 0.083 3.917 6 C 0.040 3.960 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.004 3.996 10 N -0.930 5.930 11 Si 0.961 3.039 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.268 1.268 15 C 0.084 3.916 16 H 0.105 0.895 17 C -0.159 4.159 18 C 0.040 3.960 19 N -0.498 5.498 20 C 0.082 3.918 21 C -0.084 4.084 22 C -0.110 4.110 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.129 4.129 26 C -0.129 4.129 27 C 0.042 3.958 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.029 0.971 37 H -0.005 1.005 38 H -0.013 1.013 39 H 0.264 0.736 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.027 0.973 44 H 0.033 0.967 45 H 0.091 0.909 46 H 0.131 0.869 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.135 0.865 50 H 0.112 0.888 51 H 0.033 0.967 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.776 10.978 18.478 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.039 4.039 3 C -0.189 4.189 4 N -0.257 5.257 5 C -0.044 4.044 6 C 0.003 3.997 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.194 4.194 10 N -0.569 5.569 11 Si 0.786 3.214 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.193 1.193 15 C -0.025 4.025 16 H 0.122 0.878 17 C -0.198 4.198 18 C -0.088 4.088 19 N -0.221 5.221 20 C -0.046 4.046 21 C -0.084 4.084 22 C -0.129 4.129 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.086 4.086 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.013 0.987 38 H 0.005 0.995 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.110 0.890 46 H 0.149 0.851 47 H 0.161 0.839 48 H 0.161 0.839 49 H 0.153 0.847 50 H 0.130 0.870 51 H 0.052 0.948 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.241 11.508 18.607 23.750 hybrid contribution -0.409 -2.257 -1.027 2.513 sum -9.650 9.251 17.580 22.086 Atomic orbital electron populations 1.22693 0.96731 1.01247 1.03070 1.21717 0.93572 0.95916 0.92705 1.21781 1.01160 0.93530 1.02435 1.62329 1.58571 1.02644 1.02107 1.21919 0.97030 0.86999 0.98466 1.18884 0.94121 0.93756 0.92955 1.21567 1.25851 0.95012 1.15810 0.92634 1.25910 0.94750 1.03601 0.95132 1.70099 1.29733 1.37714 1.19399 0.85564 0.78605 0.79310 0.77961 1.19163 1.20701 1.19305 1.22477 0.91309 0.99915 0.88826 0.87759 1.23370 0.98661 1.01010 0.96801 1.23046 0.95223 0.96206 0.94293 1.65495 1.04975 1.42827 1.08847 1.21209 0.97281 0.94754 0.91382 1.19744 0.96376 0.96570 0.95759 1.21213 0.99815 0.98081 0.93747 1.21455 0.94599 0.99227 0.99072 1.21469 0.98857 0.95457 0.98706 1.21368 0.99101 0.99798 0.94425 1.21194 0.95278 0.99034 0.99232 1.23115 0.94545 1.00407 0.90559 0.90244 0.91821 0.93991 0.92668 0.92979 0.91176 0.91299 0.93152 0.95346 0.98720 0.99471 0.92770 0.89685 0.90828 0.90022 0.95428 0.94906 0.89048 0.85132 0.83912 0.83949 0.84712 0.86999 0.94823 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.03 7.57 71.98 0.54 -4.49 16 2 C 0.07 2.25 2.80 44.92 0.13 2.38 16 3 C -0.13 -3.37 9.14 71.98 0.66 -2.72 16 4 N -0.53 -18.74 4.46 -840.71 -3.75 -22.49 16 5 C 0.08 3.52 3.88 86.30 0.34 3.86 16 6 C 0.04 2.17 4.92 29.85 0.15 2.32 16 7 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 9 C 0.00 0.25 5.46 84.65 0.46 0.71 16 10 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 11 Si 0.96 44.74 29.54 68.60 2.03 46.76 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 C 0.08 2.35 2.65 45.81 0.12 2.47 16 16 H 0.10 2.61 5.94 -2.39 -0.01 2.60 16 17 C -0.16 -4.19 4.09 31.49 0.13 -4.06 16 18 C 0.04 1.06 5.47 86.45 0.47 1.53 16 19 N -0.50 -12.67 5.36 -886.03 -4.75 -17.42 16 20 C 0.08 1.96 4.97 85.56 0.42 2.39 16 21 C -0.08 -1.88 5.10 -19.87 -0.10 -1.98 16 22 C -0.11 -2.14 9.70 22.27 0.22 -1.92 16 23 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 24 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 25 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 26 C -0.13 -2.83 8.73 22.27 0.19 -2.63 16 27 C 0.04 1.17 5.94 86.45 0.51 1.68 16 28 H 0.08 1.89 5.41 -2.38 -0.01 1.88 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.34 5.41 -2.38 -0.01 1.33 16 31 H 0.06 2.22 6.12 -2.39 -0.01 2.21 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.07 1.51 6.26 -2.39 -0.01 1.49 16 35 H 0.05 2.18 6.33 -2.39 -0.02 2.17 16 36 H 0.03 1.20 4.78 -2.38 -0.01 1.19 16 37 H -0.01 -0.32 6.39 -2.39 -0.02 -0.33 16 38 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.08 1.93 7.38 -2.39 -0.02 1.92 16 41 H 0.07 2.20 3.61 -2.39 -0.01 2.19 16 42 H 0.08 2.03 7.81 -2.39 -0.02 2.01 16 43 H 0.03 0.81 7.83 -2.39 -0.02 0.79 16 44 H 0.03 0.88 7.83 -2.38 -0.02 0.86 16 45 H 0.09 2.00 8.07 -2.39 -0.02 1.98 16 46 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 47 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 48 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 49 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 50 H 0.11 2.51 8.06 -2.91 -0.02 2.49 16 51 H 0.03 1.12 6.23 -2.39 -0.01 1.10 16 52 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -65.33 386.09 -0.16 -65.49 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.89 Total: 22.17 kcal Atomic # 6 Polarization: -42.64 SS G_CDS: 5.15 Total: -37.50 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -8.22 Total: -96.92 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -65.33 -0.16 -65.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154418.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.903 kcal (2) G-P(sol) polarization free energy of solvation -65.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds