Wall clock time and date at job start Tue Mar 31 2020 11:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46910 * 120.00333 * 9 7 5 12 12 H 1.48502 * 109.47120 * 240.00671 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 H 1.09004 * 112.74539 * 284.22761 * 16 15 14 18 18 C 1.53515 * 113.47990 * 153.38485 * 16 15 14 19 19 C 1.53513 * 83.57585 * 219.20998 * 18 16 15 20 20 N 1.47476 * 113.47881 * 54.99947 * 16 15 14 21 21 C 1.46898 * 111.00130 * 253.47046 * 20 16 15 22 22 C 1.50700 * 109.47404 * 170.00025 * 21 20 16 23 23 C 1.38237 * 119.99800 * 269.73157 * 22 21 20 24 24 C 1.38238 * 119.99823 * 179.74169 * 23 22 21 25 25 C 1.38233 * 119.99884 * 0.52804 * 24 23 22 26 26 C 1.38235 * 120.00360 * 359.74393 * 25 24 23 27 27 C 1.38233 * 120.00165 * 89.99668 * 22 21 20 28 28 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 29 29 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 30 30 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 33 33 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 34 34 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 36 36 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 38 38 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 39 39 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 40 40 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 41 41 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 42 42 H 1.09008 * 114.16412 * 332.84876 * 18 16 15 43 43 H 1.08991 * 114.17289 * 105.55650 * 18 16 15 44 44 H 1.09001 * 113.47031 * 271.25289 * 19 18 16 45 45 H 1.08996 * 113.53493 * 140.79562 * 19 18 16 46 46 H 1.09008 * 109.47372 * 289.99872 * 21 20 16 47 47 H 1.09000 * 109.47384 * 49.99553 * 21 20 16 48 48 H 1.07996 * 120.00059 * 359.97438 * 23 22 21 49 49 H 1.07996 * 120.00106 * 180.29340 * 24 23 22 50 50 H 1.08004 * 120.00201 * 179.77030 * 25 24 23 51 51 H 1.07993 * 120.00034 * 180.02562 * 26 25 24 52 52 H 1.08003 * 120.00100 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 0.4245 1.5661 -4.8530 11 1 2.4045 0.8658 -6.0650 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.4922 0.0535 4.8955 17 1 2.0272 0.9841 5.0850 18 6 1.3483 -0.8347 6.1393 19 6 0.0629 -0.0242 6.3574 20 7 0.0255 0.2074 4.9013 21 6 -0.3597 1.5922 4.5983 22 6 -1.8479 1.6614 4.3708 23 6 -2.3613 1.4902 3.0988 24 6 -3.7267 1.5483 2.8910 25 6 -4.5779 1.7885 3.9534 26 6 -4.0641 1.9653 5.2245 27 6 -2.6991 1.9014 5.4332 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.1300 -0.7218 -1.2489 35 1 1.6767 -1.7491 -1.2491 36 1 2.8618 -1.8826 -4.7335 37 1 3.1300 -0.7209 1.2495 38 1 1.6766 -1.7489 1.2494 39 1 1.8198 0.9437 2.4401 40 1 1.6586 -1.7220 3.6874 41 1 3.1116 -0.6939 3.6870 42 1 1.1791 -1.8886 5.9179 43 1 2.1141 -0.6693 6.8969 44 1 0.2165 0.8854 6.9379 45 1 -0.7717 -0.6220 6.7235 46 1 -0.0899 2.2360 5.4355 47 1 0.1609 1.9261 3.7008 48 1 -1.6960 1.3073 2.2680 49 1 -4.1282 1.4099 1.8980 50 1 -5.6444 1.8376 3.7905 51 1 -4.7292 2.1525 6.0545 52 1 -2.2976 2.0398 6.4262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594998550.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:21 Heat of formation + Delta-G solvation = 46.821533 kcal Electronic energy + Delta-G solvation = -27055.197707 eV Core-core repulsion = 23633.860078 eV Total energy + Delta-G solvation = -3421.337629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52118 -38.87231 -37.46704 -34.16441 -32.87211 -32.07754 -30.84553 -29.03867 -28.10321 -26.77305 -26.28722 -24.79195 -24.55107 -22.92320 -22.44583 -21.81078 -21.05481 -19.84020 -17.81227 -16.91684 -16.26592 -16.17404 -15.64819 -15.55891 -15.06797 -14.77589 -14.70160 -14.22590 -13.81602 -13.55769 -13.37122 -13.29425 -13.11502 -12.76485 -12.66732 -12.52803 -12.01549 -11.98067 -11.69581 -11.56334 -11.47448 -11.38336 -10.98936 -10.91585 -10.83665 -10.74601 -10.71379 -10.52432 -10.44723 -10.19114 -10.04062 -9.63507 -9.03063 -8.91406 -8.85828 -8.76491 -8.65365 -8.29291 -7.94825 -5.93660 -3.93488 1.36599 1.45864 3.33997 3.41857 3.45337 3.66916 4.04056 4.26757 4.45002 4.52545 4.70672 4.78097 4.88389 5.00587 5.06433 5.11709 5.21370 5.24566 5.28961 5.42241 5.46201 5.49430 5.53410 5.63653 5.66550 5.70956 5.75566 5.84927 5.90147 6.01037 6.01994 6.06375 6.09352 6.25632 6.30671 6.40967 6.47924 6.55264 6.56972 6.69503 6.76191 6.84240 6.87697 6.99977 7.07675 7.25466 7.30072 7.31834 7.48644 7.72792 7.77128 7.90212 8.07140 8.51766 9.12286 9.69239 11.18073 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.003314 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.680710 B = 8447.589488 C =10182.183510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.057 4.057 3 C -0.127 4.127 4 C 0.034 3.966 5 C -0.504 4.504 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.071 3.929 14 N -0.674 5.674 15 C 0.076 3.924 16 C 0.030 3.970 17 H 0.071 0.929 18 C -0.139 4.139 19 C -0.008 4.008 20 N -0.434 5.434 21 C 0.062 3.938 22 C -0.067 4.067 23 C -0.091 4.091 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.117 4.117 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.011 0.989 35 H 0.014 0.986 36 H 0.258 0.742 37 H 0.019 0.981 38 H 0.065 0.935 39 H 0.330 0.670 40 H 0.075 0.925 41 H 0.026 0.974 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.044 0.956 47 H 0.088 0.912 48 H 0.131 0.869 49 H 0.121 0.879 50 H 0.116 0.884 51 H 0.116 0.884 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 6.056 22.734 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.057 4.057 3 C -0.185 4.185 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.057 4.057 14 N -0.305 5.305 15 C -0.054 4.054 16 C -0.080 4.080 17 H 0.089 0.911 18 C -0.178 4.178 19 C -0.137 4.137 20 N -0.156 5.156 21 C -0.066 4.066 22 C -0.068 4.068 23 C -0.110 4.110 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.136 4.136 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.033 0.967 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.062 0.938 47 H 0.106 0.894 48 H 0.149 0.851 49 H 0.139 0.861 50 H 0.135 0.865 51 H 0.134 0.866 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.707 5.241 22.144 24.025 hybrid contribution 1.115 1.221 -0.491 1.725 sum -6.592 6.462 21.653 23.538 Atomic orbital electron populations 1.21592 0.94961 1.00580 0.99934 1.20605 0.95873 0.94821 0.94436 1.21756 0.99574 0.96894 1.00248 1.19121 0.95803 0.95218 0.90252 1.21281 1.30548 1.11843 0.90613 0.92266 1.25018 0.95442 0.95133 0.99041 1.69978 1.37426 1.23264 1.23124 0.86626 0.78585 0.79764 0.83572 1.19773 1.21237 1.21158 1.22095 0.95984 0.98199 0.89447 1.60524 1.63405 1.05645 1.00898 1.21868 0.95801 0.98782 0.88930 1.23432 0.90781 0.98292 0.95510 0.91092 1.23186 0.97451 1.00053 0.97068 1.23863 0.98686 0.99551 0.91600 1.68986 1.12055 1.22085 1.12470 1.21606 0.92809 0.90630 1.01522 1.19640 0.94743 0.98978 0.93412 1.21242 0.95307 0.97311 0.97110 1.21213 0.93739 0.99886 0.99025 1.21115 0.99510 1.00656 0.93098 1.21028 0.95146 1.01382 0.96993 1.20956 0.93471 1.01040 0.98128 0.93819 0.92920 0.94220 0.94244 0.91803 0.94989 0.97034 0.96720 0.93262 0.96242 0.91629 0.85129 0.90646 0.95609 0.88710 0.90907 0.91876 0.89950 0.93777 0.89360 0.85100 0.86085 0.86549 0.86638 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 8.06 37.16 0.30 -1.90 16 2 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 3 C -0.13 -2.35 7.89 37.16 0.29 -2.05 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.50 -13.84 7.65 -34.44 -0.26 -14.11 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.07 1.23 4.65 -3.82 -0.02 1.21 16 14 N -0.67 -9.51 5.42 -113.78 -0.62 -10.13 16 15 C 0.08 0.92 5.82 -3.82 -0.02 0.90 16 16 C 0.03 0.30 3.28 -71.43 -0.23 0.06 16 17 H 0.07 0.66 7.91 -51.93 -0.41 0.25 16 18 C -0.14 -1.17 8.00 -26.20 -0.21 -1.38 16 19 C -0.01 -0.07 7.71 -7.54 -0.06 -0.13 16 20 N -0.43 -4.81 5.96 -237.93 -1.42 -6.23 16 21 C 0.06 0.67 4.94 -4.98 -0.02 0.65 16 22 C -0.07 -0.79 5.46 -104.62 -0.57 -1.37 16 23 C -0.09 -1.17 9.70 -39.58 -0.38 -1.55 16 24 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 25 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 26 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 27 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 28 H 0.04 0.75 6.38 -51.93 -0.33 0.42 16 29 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 33 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.33 4.48 6.42 -39.29 -0.25 4.23 16 40 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 41 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.84 7.94 -51.92 -0.41 0.42 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.49 7.42 -51.93 -0.39 0.10 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.04 0.42 7.25 -51.92 -0.38 0.04 16 47 H 0.09 1.02 7.50 -51.93 -0.39 0.63 16 48 H 0.13 1.79 6.83 -52.49 -0.36 1.43 16 49 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 50 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 51 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 52 H 0.11 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 403.46 15.07 6.08 6.08 Total: -1.00 -29.89 403.46 -12.60 -42.48 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -9.28 Total: 2.97 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -3.07 Total: -25.58 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -1.30 Total: -42.65 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.89 -12.60 -42.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594998550.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.303 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds