Wall clock time and date at job start Tue Mar 31 2020 11:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46910 * 120.00333 * 9 7 5 12 12 H 1.48502 * 109.47120 * 240.00671 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 H 1.09004 * 112.74539 * 284.22761 * 16 15 14 18 18 C 1.53515 * 113.47990 * 153.38485 * 16 15 14 19 19 C 1.53513 * 83.57585 * 219.20998 * 18 16 15 20 20 N 1.47476 * 113.47881 * 54.99947 * 16 15 14 21 21 C 1.46898 * 111.00130 * 253.47046 * 20 16 15 22 22 C 1.50700 * 109.47404 * 170.00025 * 21 20 16 23 23 C 1.38237 * 119.99800 * 269.73157 * 22 21 20 24 24 C 1.38238 * 119.99823 * 179.74169 * 23 22 21 25 25 C 1.38233 * 119.99884 * 0.52804 * 24 23 22 26 26 C 1.38235 * 120.00360 * 359.74393 * 25 24 23 27 27 C 1.38233 * 120.00165 * 89.99668 * 22 21 20 28 28 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 29 29 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 30 30 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 33 33 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 34 34 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 36 36 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 38 38 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 39 39 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 40 40 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 41 41 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 42 42 H 1.09008 * 114.16412 * 332.84876 * 18 16 15 43 43 H 1.08991 * 114.17289 * 105.55650 * 18 16 15 44 44 H 1.09001 * 113.47031 * 271.25289 * 19 18 16 45 45 H 1.08996 * 113.53493 * 140.79562 * 19 18 16 46 46 H 1.09008 * 109.47372 * 289.99872 * 21 20 16 47 47 H 1.09000 * 109.47384 * 49.99553 * 21 20 16 48 48 H 1.07996 * 120.00059 * 359.97438 * 23 22 21 49 49 H 1.07996 * 120.00106 * 180.29340 * 24 23 22 50 50 H 1.08004 * 120.00201 * 179.77030 * 25 24 23 51 51 H 1.07993 * 120.00034 * 180.02562 * 26 25 24 52 52 H 1.08003 * 120.00100 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 0.4245 1.5661 -4.8530 11 1 2.4045 0.8658 -6.0650 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.4922 0.0535 4.8955 17 1 2.0272 0.9841 5.0850 18 6 1.3483 -0.8347 6.1393 19 6 0.0629 -0.0242 6.3574 20 7 0.0255 0.2074 4.9013 21 6 -0.3597 1.5922 4.5983 22 6 -1.8479 1.6614 4.3708 23 6 -2.3613 1.4902 3.0988 24 6 -3.7267 1.5483 2.8910 25 6 -4.5779 1.7885 3.9534 26 6 -4.0641 1.9653 5.2245 27 6 -2.6991 1.9014 5.4332 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.1300 -0.7218 -1.2489 35 1 1.6767 -1.7491 -1.2491 36 1 2.8618 -1.8826 -4.7335 37 1 3.1300 -0.7209 1.2495 38 1 1.6766 -1.7489 1.2494 39 1 1.8198 0.9437 2.4401 40 1 1.6586 -1.7220 3.6874 41 1 3.1116 -0.6939 3.6870 42 1 1.1791 -1.8886 5.9179 43 1 2.1141 -0.6693 6.8969 44 1 0.2165 0.8854 6.9379 45 1 -0.7717 -0.6220 6.7235 46 1 -0.0899 2.2360 5.4355 47 1 0.1609 1.9261 3.7008 48 1 -1.6960 1.3073 2.2680 49 1 -4.1282 1.4099 1.8980 50 1 -5.6444 1.8376 3.7905 51 1 -4.7292 2.1525 6.0545 52 1 -2.2976 2.0398 6.4262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594998550.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:20 Heat of formation + Delta-G solvation = 29.764938 kcal Electronic energy + Delta-G solvation = -27055.937337 eV Core-core repulsion = 23633.860078 eV Total energy + Delta-G solvation = -3422.077259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29741 -39.69181 -39.01756 -35.63942 -34.17170 -33.57080 -31.66964 -29.91783 -29.40766 -28.48331 -27.88758 -26.30657 -25.32686 -24.37193 -23.41980 -22.99391 -21.86785 -20.61815 -19.44406 -18.33584 -17.70621 -17.06869 -16.74304 -16.55684 -16.36190 -15.94369 -15.75036 -15.62537 -15.01573 -14.91422 -14.56586 -14.23780 -14.08561 -14.03263 -13.92454 -13.82938 -13.49157 -13.38841 -12.86755 -12.78587 -12.69071 -12.50073 -12.35459 -12.29648 -12.21915 -12.17136 -12.05661 -11.90940 -11.66203 -11.51643 -11.42172 -11.28925 -10.84392 -10.66637 -10.51169 -9.73363 -9.67591 -9.46845 -9.14784 -8.14041 -6.20929 0.54153 0.61404 1.39439 1.40463 1.52703 2.43445 2.85929 3.17184 3.19854 3.44815 3.63547 3.91560 3.97183 4.09935 4.15657 4.22476 4.24259 4.32485 4.36524 4.40130 4.43886 4.44586 4.52190 4.62687 4.73535 4.77454 4.80312 4.82474 4.85200 4.90888 4.98670 5.01363 5.03904 5.09058 5.20191 5.22348 5.23563 5.28080 5.32111 5.49741 5.52032 5.55541 5.59079 5.65900 5.67712 5.76056 5.86866 5.89306 5.93372 6.17280 6.21362 6.30529 6.38395 6.62036 6.94484 7.46386 8.98597 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.003314 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.680710 B = 8447.589488 C =10182.183510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.053 4.053 3 C -0.119 4.119 4 C 0.041 3.959 5 C -0.512 4.512 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.085 3.915 14 N -0.669 5.669 15 C 0.076 3.924 16 C 0.033 3.967 17 H 0.086 0.914 18 C -0.130 4.130 19 C -0.004 4.004 20 N -0.460 5.460 21 C 0.067 3.933 22 C -0.077 4.077 23 C -0.115 4.115 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.129 4.129 27 C -0.121 4.121 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.024 0.976 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.065 0.935 34 H -0.017 1.017 35 H -0.019 1.019 36 H 0.259 0.741 37 H 0.015 0.985 38 H 0.049 0.951 39 H 0.337 0.663 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.114 0.886 49 H 0.124 0.876 50 H 0.136 0.864 51 H 0.141 0.859 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 7.886 25.020 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.053 4.053 3 C -0.176 4.176 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.209 1.209 13 C -0.044 4.044 14 N -0.301 5.301 15 C -0.053 4.053 16 C -0.077 4.077 17 H 0.103 0.897 18 C -0.168 4.168 19 C -0.132 4.132 20 N -0.183 5.183 21 C -0.061 4.061 22 C -0.077 4.077 23 C -0.133 4.133 24 C -0.154 4.154 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.140 4.140 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.002 0.998 35 H -0.001 1.001 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.156 0.844 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.132 0.868 49 H 0.142 0.858 50 H 0.154 0.846 51 H 0.159 0.841 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.597 7.085 24.449 26.867 hybrid contribution 1.368 0.612 -1.145 1.886 sum -7.229 7.696 23.304 25.584 Atomic orbital electron populations 1.21464 0.94416 0.99696 1.00254 1.20463 0.96130 0.95555 0.93165 1.21649 0.99374 0.95572 1.01018 1.19000 0.93882 0.93977 0.92838 1.21644 1.30040 1.11853 0.91439 0.91641 1.25923 0.95730 0.95919 1.02574 1.70117 1.38954 1.24982 1.23945 0.85536 0.78150 0.78828 0.79400 1.18453 1.20732 1.20871 1.21768 0.95460 0.97315 0.89855 1.60439 1.63331 1.05849 1.00452 1.21916 0.96288 0.98330 0.88786 1.23436 0.90395 0.99013 0.94870 0.89661 1.23142 0.97849 0.99267 0.96542 1.23883 0.98672 1.00249 0.90416 1.68964 1.12624 1.22392 1.14270 1.21561 0.92045 0.90875 1.01643 1.19817 0.95619 0.98972 0.93293 1.21231 0.95622 0.99116 0.97354 1.21376 0.93765 1.00459 0.99838 1.21397 1.00455 1.00157 0.93031 1.21393 0.95523 1.00214 0.97545 1.21221 0.93654 1.00424 0.98671 0.91419 0.94506 0.95690 0.94473 0.93583 0.91578 0.99826 1.00077 0.93187 0.96718 0.93203 0.84370 0.91951 0.94877 0.89518 0.88750 0.90084 0.90353 0.92084 0.90512 0.86831 0.85842 0.84589 0.84109 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.97 8.06 71.98 0.58 -3.39 16 2 C -0.05 -2.13 0.60 -52.18 -0.03 -2.16 16 3 C -0.12 -4.31 7.89 71.98 0.57 -3.75 16 4 C 0.04 2.15 4.04 29.85 0.12 2.27 16 5 C -0.51 -28.76 7.65 25.60 0.20 -28.56 16 6 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 7 C 0.00 -0.29 5.46 84.65 0.46 0.18 16 8 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 9 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 C 0.09 2.99 4.65 86.30 0.40 3.39 16 14 N -0.67 -18.34 5.42 -513.88 -2.78 -21.12 16 15 C 0.08 1.75 5.82 86.30 0.50 2.26 16 16 C 0.03 0.58 3.28 42.19 0.14 0.71 16 17 H 0.09 1.30 7.91 -2.39 -0.02 1.28 16 18 C -0.13 -1.83 8.00 30.94 0.25 -1.59 16 19 C 0.00 -0.05 7.71 83.58 0.64 0.59 16 20 N -0.46 -9.30 5.96 -906.69 -5.41 -14.71 16 21 C 0.07 1.30 4.94 85.56 0.42 1.73 16 22 C -0.08 -1.70 5.46 -19.87 -0.11 -1.81 16 23 C -0.11 -2.91 9.70 22.27 0.22 -2.70 16 24 C -0.14 -3.17 10.05 22.27 0.22 -2.95 16 25 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 26 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 27 C -0.12 -2.28 9.70 22.27 0.22 -2.07 16 28 H 0.07 2.32 6.38 -2.39 -0.02 2.31 16 29 H 0.04 1.54 6.62 -2.39 -0.02 1.52 16 30 H 0.02 1.01 8.14 -2.38 -0.02 1.00 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 33 H 0.07 1.94 6.57 -2.39 -0.02 1.92 16 34 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.34 8.55 6.42 -89.69 -0.58 7.98 16 40 H 0.06 1.60 7.87 -2.39 -0.02 1.58 16 41 H 0.03 0.72 8.14 -2.39 -0.02 0.71 16 42 H 0.09 1.38 7.94 -2.38 -0.02 1.36 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.08 0.93 7.42 -2.39 -0.02 0.91 16 45 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 0.96 7.25 -2.38 -0.02 0.94 16 47 H 0.08 1.65 7.50 -2.39 -0.02 1.63 16 48 H 0.11 3.17 6.83 -2.91 -0.02 3.15 16 49 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 50 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 51 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 52 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -66.32 403.46 -0.33 -66.65 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.30 Total: 22.28 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 5.25 Total: -42.30 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -7.90 Total: -93.73 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -66.32 -0.33 -66.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594998550.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.417 kcal (2) G-P(sol) polarization free energy of solvation -66.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds