Wall clock time and date at job start Tue Mar 31 2020 11:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 5 5 C 1.50706 * 109.47348 * 300.00277 * 4 2 1 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.72505 * 5 4 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99579 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46492 * 299.99554 * 9 7 5 13 13 C 1.52996 * 109.47460 * 239.99823 * 2 1 3 14 14 N 1.46907 * 109.47007 * 59.99928 * 13 2 1 15 15 C 1.46901 * 111.00060 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.46851 * 179.97438 * 15 14 13 17 17 H 1.08993 * 112.95621 * 74.67202 * 16 15 14 18 18 C 1.53936 * 113.75410 * 206.31601 * 16 15 14 19 19 C 1.53933 * 86.34024 * 138.03949 * 18 16 15 20 20 N 1.47955 * 113.75969 * 303.01752 * 16 15 14 21 21 C 1.46908 * 110.99446 * 108.10358 * 20 16 15 22 22 C 1.50706 * 109.46913 * 170.00001 * 21 20 16 23 23 C 1.38230 * 119.99847 * 269.72694 * 22 21 20 24 24 C 1.38240 * 120.00041 * 179.76759 * 23 22 21 25 25 C 1.38231 * 119.99648 * 0.48343 * 24 23 22 26 26 C 1.38237 * 120.00014 * 359.79048 * 25 24 23 27 27 C 1.38230 * 119.99859 * 90.00036 * 22 21 20 28 28 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 29 29 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 30 30 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 33 33 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 34 34 H 1.09001 * 109.47671 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47454 * 60.00483 * 4 2 1 36 36 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47441 * 179.97438 * 13 2 1 38 38 H 1.08994 * 109.47235 * 299.99931 * 13 2 1 39 39 H 1.00894 * 110.99644 * 303.95540 * 14 13 2 40 40 H 1.08998 * 109.47247 * 300.00231 * 15 14 13 41 41 H 1.09005 * 109.46564 * 60.00124 * 15 14 13 42 42 H 1.09006 * 113.73351 * 252.39333 * 18 16 15 43 43 H 1.08996 * 113.73941 * 23.68315 * 18 16 15 44 44 H 1.09007 * 113.75750 * 90.59308 * 19 18 16 45 45 H 1.08999 * 113.76431 * 221.84620 * 19 18 16 46 46 H 1.08997 * 109.47234 * 289.99504 * 21 20 16 47 47 H 1.09000 * 109.46953 * 50.00130 * 21 20 16 48 48 H 1.07999 * 120.00298 * 359.97438 * 23 22 21 49 49 H 1.07993 * 120.00352 * 180.25533 * 24 23 22 50 50 H 1.08003 * 120.00397 * 179.77134 * 25 24 23 51 51 H 1.08004 * 120.00034 * 179.97438 * 26 25 24 52 52 H 1.08001 * 120.00650 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5376 -0.0108 2.4798 6 1 0.9170 0.8675 2.3806 7 6 1.8660 -0.4850 3.7320 8 7 2.6172 -1.5577 3.8527 9 14 1.2427 0.3951 5.2572 10 1 -0.2423 0.4003 5.2536 11 1 1.7318 -0.3090 6.4697 12 1 1.7427 1.7934 5.2607 13 6 2.0400 -0.7213 -1.2492 14 7 1.5503 -0.0288 -2.4487 15 6 2.0219 -0.6945 -3.6703 16 6 1.4923 0.0533 -4.8955 17 1 2.0122 0.9939 -5.0770 18 6 1.3525 -0.8299 -6.1485 19 6 0.0129 -0.1097 -6.3860 20 7 0.0178 0.1706 -4.9310 21 6 -0.4072 1.5499 -4.6572 22 6 -1.8810 1.6871 -4.9408 23 6 -2.3108 2.0559 -6.2018 24 6 -3.6628 2.1771 -6.4633 25 6 -4.5846 1.9390 -5.4610 26 6 -4.1545 1.5756 -4.1985 27 6 -2.8027 1.4495 -3.9385 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 2.8480 -1.8917 4.7337 37 1 3.1300 -0.7209 -1.2494 38 1 1.6767 -1.7489 -1.2492 39 1 0.5439 0.0413 -2.4401 40 1 3.1118 -0.6940 -3.6868 41 1 1.6588 -1.7222 -3.6872 42 1 2.1014 -0.6270 -6.9141 43 1 1.2463 -1.8919 -5.9272 44 1 0.0985 0.7843 -7.0039 45 1 -0.7913 -0.7722 -6.7060 46 1 -0.2148 1.7886 -3.6113 47 1 0.1508 2.2354 -5.2950 48 1 -1.5904 2.2463 -6.9836 49 1 -3.9987 2.4612 -7.4495 50 1 -5.6407 2.0372 -5.6642 51 1 -4.8747 1.3901 -3.4153 52 1 -2.4668 1.1660 -2.9519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594998551.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:23 Heat of formation + Delta-G solvation = 42.022417 kcal Electronic energy + Delta-G solvation = -26786.295284 eV Core-core repulsion = 23364.749549 eV Total energy + Delta-G solvation = -3421.545735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48982 -38.95354 -37.42429 -34.14123 -32.93984 -32.06579 -31.03543 -29.07564 -28.16390 -26.76962 -26.27599 -24.82169 -24.58220 -23.05717 -22.60787 -21.83674 -21.17578 -19.64989 -17.84898 -17.01952 -16.40018 -16.18088 -15.79176 -15.51404 -15.26271 -14.80374 -14.68619 -14.36777 -13.76824 -13.58140 -13.53852 -13.28359 -13.04946 -12.81366 -12.65314 -12.51973 -12.22388 -11.95641 -11.89908 -11.62876 -11.52011 -11.40328 -11.08041 -10.92410 -10.83288 -10.78890 -10.72236 -10.58461 -10.43427 -10.20143 -10.08366 -9.62693 -9.10208 -9.03564 -8.94842 -8.81975 -8.74328 -8.27948 -7.97084 -5.92645 -3.92625 1.18702 1.27007 3.36991 3.41466 3.43751 3.52063 3.87025 4.26137 4.45301 4.52803 4.60573 4.67284 4.82843 4.84776 4.99239 5.13630 5.15884 5.21951 5.26649 5.37458 5.39563 5.43038 5.48575 5.52123 5.60547 5.72374 5.77884 5.85739 5.87340 5.88752 5.94728 6.02714 6.05664 6.18208 6.32856 6.33724 6.38283 6.40992 6.51225 6.58046 6.70766 6.84799 6.85034 6.87330 6.92691 7.26139 7.29611 7.31026 7.49352 7.74202 7.82881 7.91680 8.07928 8.52567 9.12614 9.69889 11.19047 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.002937 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.492218 B = 9530.935283 C =11052.131396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.057 4.057 3 C -0.114 4.114 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.070 3.930 14 N -0.686 5.686 15 C 0.077 3.923 16 C 0.038 3.962 17 H 0.083 0.917 18 C -0.143 4.143 19 C 0.004 3.996 20 N -0.467 5.467 21 C 0.060 3.940 22 C -0.074 4.074 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.097 4.097 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.014 0.986 35 H 0.012 0.988 36 H 0.259 0.741 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.344 0.656 40 H 0.071 0.929 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.046 0.954 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.122 0.878 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 5.271 -24.081 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.058 4.058 3 C -0.172 4.172 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.058 4.058 14 N -0.318 5.318 15 C -0.053 4.053 16 C -0.071 4.071 17 H 0.101 0.899 18 C -0.182 4.182 19 C -0.125 4.125 20 N -0.190 5.190 21 C -0.068 4.068 22 C -0.075 4.075 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.115 4.115 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.164 0.836 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.113 0.887 47 H 0.065 0.935 48 H 0.133 0.867 49 H 0.136 0.864 50 H 0.136 0.864 51 H 0.140 0.860 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.088 5.242 -23.481 25.382 hybrid contribution -0.459 0.177 0.443 0.662 sum -8.547 5.419 -23.039 25.164 Atomic orbital electron populations 1.21747 0.96129 1.00348 1.00202 1.20608 0.94679 0.96026 0.94457 1.21586 0.99698 0.95890 1.00001 1.19119 0.96053 0.94992 0.90203 1.21208 1.30824 1.11774 0.90643 0.92377 1.25011 0.95459 0.95105 0.99015 1.69959 1.37556 1.22965 1.23342 0.86734 0.79157 0.79821 0.82738 1.20368 1.21470 1.20323 1.22088 0.99552 0.94719 0.89487 1.60559 1.17021 1.53334 1.00912 1.21790 0.99446 0.95077 0.88962 1.23536 0.89445 0.98874 0.95273 0.89941 1.23426 0.97051 1.00458 0.97215 1.23842 0.98218 0.99730 0.90722 1.68612 1.12464 1.22420 1.15507 1.21622 0.91386 0.90720 1.03075 1.19757 0.95167 0.98884 0.93671 1.21019 0.95746 1.00479 0.96207 1.21073 0.93204 1.00837 0.99089 1.21136 0.99415 1.00185 0.93510 1.21198 0.95922 0.99742 0.96968 1.21132 0.92732 0.98285 0.99398 0.91851 0.94926 0.94143 0.94252 0.94041 0.92801 0.96749 0.96933 0.93146 0.91802 0.96010 0.83595 0.91037 0.95080 0.91044 0.89129 0.91571 0.89665 0.88712 0.93542 0.86692 0.86402 0.86374 0.86046 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.89 37.15 0.29 -2.12 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 3 C -0.11 -2.24 8.06 37.16 0.30 -1.94 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.98 7.65 -34.44 -0.26 -14.24 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.07 1.24 4.65 -3.82 -0.02 1.23 16 14 N -0.69 -10.09 5.71 -113.78 -0.65 -10.74 16 15 C 0.08 0.96 5.86 -3.82 -0.02 0.94 16 16 C 0.04 0.39 3.58 -66.66 -0.24 0.15 16 17 H 0.08 0.84 7.79 -51.93 -0.40 0.43 16 18 C -0.14 -1.20 7.84 -25.79 -0.20 -1.41 16 19 C 0.00 0.03 6.97 -2.64 -0.02 0.01 16 20 N -0.47 -4.95 5.48 -231.17 -1.27 -6.22 16 21 C 0.06 0.63 4.86 -4.97 -0.02 0.60 16 22 C -0.07 -0.79 5.12 -104.62 -0.54 -1.32 16 23 C -0.12 -1.09 8.99 -39.58 -0.36 -1.44 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 27 C -0.10 -1.07 9.70 -39.59 -0.38 -1.45 16 28 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 29 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16 33 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.34 5.13 5.53 -39.29 -0.22 4.91 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.41 7.87 -51.93 -0.41 0.00 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.80 7.92 -51.93 -0.41 0.39 16 44 H 0.07 0.51 7.12 -51.93 -0.37 0.14 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 1.12 7.50 -51.93 -0.39 0.73 16 47 H 0.05 0.45 7.63 -51.93 -0.40 0.05 16 48 H 0.12 0.90 7.47 -52.49 -0.39 0.50 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 50 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 51 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 52 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -29.74 402.50 -12.44 -42.18 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -9.34 Total: 2.98 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -2.97 Total: -24.64 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -1.18 Total: -43.35 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.74 -12.44 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594998551.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.206 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds