Wall clock time and date at job start Tue Mar 31 2020 11:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 5 5 C 1.50706 * 109.47348 * 300.00277 * 4 2 1 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.72505 * 5 4 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99579 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46492 * 299.99554 * 9 7 5 13 13 C 1.52996 * 109.47460 * 239.99823 * 2 1 3 14 14 N 1.46907 * 109.47007 * 59.99928 * 13 2 1 15 15 C 1.46901 * 111.00060 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.46851 * 179.97438 * 15 14 13 17 17 H 1.08993 * 112.95621 * 74.67202 * 16 15 14 18 18 C 1.53936 * 113.75410 * 206.31601 * 16 15 14 19 19 C 1.53933 * 86.34024 * 138.03949 * 18 16 15 20 20 N 1.47955 * 113.75969 * 303.01752 * 16 15 14 21 21 C 1.46908 * 110.99446 * 108.10358 * 20 16 15 22 22 C 1.50706 * 109.46913 * 170.00001 * 21 20 16 23 23 C 1.38230 * 119.99847 * 269.72694 * 22 21 20 24 24 C 1.38240 * 120.00041 * 179.76759 * 23 22 21 25 25 C 1.38231 * 119.99648 * 0.48343 * 24 23 22 26 26 C 1.38237 * 120.00014 * 359.79048 * 25 24 23 27 27 C 1.38230 * 119.99859 * 90.00036 * 22 21 20 28 28 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 29 29 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 30 30 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 33 33 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 34 34 H 1.09001 * 109.47671 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47454 * 60.00483 * 4 2 1 36 36 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47441 * 179.97438 * 13 2 1 38 38 H 1.08994 * 109.47235 * 299.99931 * 13 2 1 39 39 H 1.00894 * 110.99644 * 303.95540 * 14 13 2 40 40 H 1.08998 * 109.47247 * 300.00231 * 15 14 13 41 41 H 1.09005 * 109.46564 * 60.00124 * 15 14 13 42 42 H 1.09006 * 113.73351 * 252.39333 * 18 16 15 43 43 H 1.08996 * 113.73941 * 23.68315 * 18 16 15 44 44 H 1.09007 * 113.75750 * 90.59308 * 19 18 16 45 45 H 1.08999 * 113.76431 * 221.84620 * 19 18 16 46 46 H 1.08997 * 109.47234 * 289.99504 * 21 20 16 47 47 H 1.09000 * 109.46953 * 50.00130 * 21 20 16 48 48 H 1.07999 * 120.00298 * 359.97438 * 23 22 21 49 49 H 1.07993 * 120.00352 * 180.25533 * 24 23 22 50 50 H 1.08003 * 120.00397 * 179.77134 * 25 24 23 51 51 H 1.08004 * 120.00034 * 179.97438 * 26 25 24 52 52 H 1.08001 * 120.00650 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5376 -0.0108 2.4798 6 1 0.9170 0.8675 2.3806 7 6 1.8660 -0.4850 3.7320 8 7 2.6172 -1.5577 3.8527 9 14 1.2427 0.3951 5.2572 10 1 -0.2423 0.4003 5.2536 11 1 1.7318 -0.3090 6.4697 12 1 1.7427 1.7934 5.2607 13 6 2.0400 -0.7213 -1.2492 14 7 1.5503 -0.0288 -2.4487 15 6 2.0219 -0.6945 -3.6703 16 6 1.4923 0.0533 -4.8955 17 1 2.0122 0.9939 -5.0770 18 6 1.3525 -0.8299 -6.1485 19 6 0.0129 -0.1097 -6.3860 20 7 0.0178 0.1706 -4.9310 21 6 -0.4072 1.5499 -4.6572 22 6 -1.8810 1.6871 -4.9408 23 6 -2.3108 2.0559 -6.2018 24 6 -3.6628 2.1771 -6.4633 25 6 -4.5846 1.9390 -5.4610 26 6 -4.1545 1.5756 -4.1985 27 6 -2.8027 1.4495 -3.9385 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 2.8480 -1.8917 4.7337 37 1 3.1300 -0.7209 -1.2494 38 1 1.6767 -1.7489 -1.2492 39 1 0.5439 0.0413 -2.4401 40 1 3.1118 -0.6940 -3.6868 41 1 1.6588 -1.7222 -3.6872 42 1 2.1014 -0.6270 -6.9141 43 1 1.2463 -1.8919 -5.9272 44 1 0.0985 0.7843 -7.0039 45 1 -0.7913 -0.7722 -6.7060 46 1 -0.2148 1.7886 -3.6113 47 1 0.1508 2.2354 -5.2950 48 1 -1.5904 2.2463 -6.9836 49 1 -3.9987 2.4612 -7.4495 50 1 -5.6407 2.0372 -5.6642 51 1 -4.8747 1.3901 -3.4153 52 1 -2.4668 1.1660 -2.9519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594998551.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:22 Heat of formation + Delta-G solvation = 25.561737 kcal Electronic energy + Delta-G solvation = -26787.009073 eV Core-core repulsion = 23364.749549 eV Total energy + Delta-G solvation = -3422.259523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25784 -39.69685 -38.98474 -35.62335 -34.18344 -33.57424 -31.73593 -29.89519 -29.45622 -28.52789 -27.90029 -26.33861 -25.31881 -24.44435 -23.51302 -23.06893 -21.90767 -20.43374 -19.49711 -18.33054 -17.73847 -17.23333 -16.76103 -16.62060 -16.25106 -16.16585 -15.68740 -15.64516 -15.04477 -14.86141 -14.73251 -14.26582 -14.12587 -13.92267 -13.89523 -13.67486 -13.55987 -13.42949 -13.02352 -12.82076 -12.70162 -12.65086 -12.36613 -12.32384 -12.25535 -12.12475 -12.11716 -11.91543 -11.76614 -11.51295 -11.42734 -11.36489 -10.85334 -10.70673 -10.49713 -9.80700 -9.75014 -9.52629 -9.22783 -8.13476 -6.20658 0.47333 0.55197 1.40664 1.43143 1.50393 2.43976 2.78319 3.08519 3.20181 3.36917 3.63830 3.88701 3.95165 4.04662 4.11671 4.19398 4.22869 4.29836 4.32104 4.38539 4.38751 4.46763 4.52104 4.59750 4.68338 4.76214 4.79784 4.80639 4.84260 4.89514 4.92717 4.98805 5.02062 5.07577 5.16986 5.19461 5.21081 5.21211 5.30157 5.43093 5.51138 5.53411 5.58220 5.62962 5.65893 5.67904 5.77085 5.87568 5.92829 6.12769 6.15371 6.19211 6.37923 6.59624 6.94115 7.46532 8.98791 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.002937 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.492218 B = 9530.935283 C =11052.131396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.053 4.053 3 C -0.104 4.104 4 C 0.040 3.960 5 C -0.515 4.515 6 H 0.066 0.934 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.083 3.917 14 N -0.678 5.678 15 C 0.077 3.923 16 C 0.040 3.960 17 H 0.088 0.912 18 C -0.133 4.133 19 C 0.009 3.991 20 N -0.485 5.485 21 C 0.066 3.934 22 C -0.085 4.085 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.130 4.130 26 C -0.133 4.133 27 C -0.119 4.119 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.038 0.962 34 H -0.015 1.015 35 H -0.018 1.018 36 H 0.260 0.740 37 H 0.057 0.943 38 H 0.010 0.990 39 H 0.344 0.656 40 H 0.075 0.925 41 H 0.024 0.976 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.056 0.944 48 H 0.132 0.868 49 H 0.142 0.858 50 H 0.139 0.861 51 H 0.130 0.870 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 6.828 -26.184 28.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.054 4.054 3 C -0.161 4.161 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.047 4.047 14 N -0.311 5.311 15 C -0.053 4.053 16 C -0.070 4.070 17 H 0.106 0.894 18 C -0.171 4.171 19 C -0.120 4.120 20 N -0.208 5.208 21 C -0.062 4.062 22 C -0.086 4.086 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.148 4.148 26 C -0.151 4.151 27 C -0.138 4.138 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.003 0.997 35 H 0.000 1.000 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.029 0.971 39 H 0.165 0.835 40 H 0.093 0.907 41 H 0.043 0.957 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.150 0.850 49 H 0.160 0.840 50 H 0.157 0.843 51 H 0.148 0.852 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.229 6.810 -25.605 28.056 hybrid contribution -0.120 -0.336 1.038 1.098 sum -9.349 6.474 -24.567 27.071 Atomic orbital electron populations 1.21639 0.94955 1.00085 1.00862 1.20470 0.95540 0.96155 0.93208 1.21474 0.99140 0.95141 1.00375 1.19000 0.94070 0.93901 0.92739 1.21585 1.30384 1.11845 0.91456 0.91638 1.25923 0.95721 0.95880 1.02571 1.70106 1.39080 1.24689 1.24088 0.85634 0.78943 0.78812 0.78488 1.19302 1.21311 1.19261 1.21804 0.99042 0.93997 0.89849 1.60515 1.16966 1.52951 1.00642 1.21872 0.99742 0.94942 0.88730 1.23486 0.89387 0.99304 0.94808 0.89366 1.23368 0.97432 0.99762 0.96541 1.23859 0.98172 1.00251 0.89681 1.68595 1.12494 1.22632 1.17123 1.21527 0.91607 0.90888 1.02190 1.19839 0.95059 0.99444 0.94213 1.21240 0.96536 1.00005 0.96052 1.21418 0.92978 0.99920 1.00111 1.21443 1.00722 0.99520 0.93114 1.21401 0.95746 0.99975 0.97946 1.21205 0.93595 0.99641 0.99367 0.93398 0.91946 0.94878 0.94994 0.91571 0.94329 0.99702 0.99986 0.93159 0.92421 0.97133 0.83549 0.90681 0.95744 0.89050 0.89647 0.90041 0.89972 0.90442 0.92619 0.85005 0.84022 0.84339 0.85209 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 7.89 71.98 0.57 -3.92 16 2 C -0.05 -2.19 0.60 -52.18 -0.03 -2.22 16 3 C -0.10 -4.04 8.06 71.98 0.58 -3.45 16 4 C 0.04 2.15 4.04 29.85 0.12 2.27 16 5 C -0.51 -29.00 7.65 25.60 0.20 -28.80 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.52 16 7 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 8 N -0.94 -58.22 13.29 21.45 0.28 -57.93 16 9 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.08 2.95 4.65 86.30 0.40 3.35 16 14 N -0.68 -19.43 5.71 -513.88 -2.94 -22.37 16 15 C 0.08 1.83 5.86 86.30 0.51 2.33 16 16 C 0.04 0.73 3.58 45.02 0.16 0.90 16 17 H 0.09 1.57 7.79 -2.39 -0.02 1.55 16 18 C -0.13 -1.92 7.84 31.24 0.25 -1.67 16 19 C 0.01 0.13 6.97 86.36 0.60 0.73 16 20 N -0.49 -9.51 5.48 -885.28 -4.85 -14.37 16 21 C 0.07 1.28 4.86 85.56 0.42 1.70 16 22 C -0.09 -1.69 5.12 -19.87 -0.10 -1.79 16 23 C -0.12 -1.97 8.99 22.27 0.20 -1.77 16 24 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 25 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 26 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 27 C -0.12 -2.59 9.70 22.27 0.22 -2.37 16 28 H 0.05 1.95 6.62 -2.39 -0.02 1.94 16 29 H 0.06 1.98 6.57 -2.39 -0.02 1.97 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.07 2.23 7.60 -2.39 -0.02 2.21 16 33 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16 34 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 35 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.34 9.95 5.53 -89.70 -0.50 9.45 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.02 0.62 7.87 -2.38 -0.02 0.60 16 42 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.08 1.34 7.92 -2.39 -0.02 1.33 16 44 H 0.08 0.98 7.12 -2.38 -0.02 0.96 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 1.75 7.50 -2.39 -0.02 1.74 16 47 H 0.06 0.96 7.63 -2.39 -0.02 0.94 16 48 H 0.13 1.65 7.47 -2.91 -0.02 1.63 16 49 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 50 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 51 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 52 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -65.15 402.50 0.11 -65.05 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.37 Total: 22.94 kcal Atomic # 6 Polarization: -45.59 SS G_CDS: 5.21 Total: -40.37 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -7.50 Total: -94.67 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.15 0.11 -65.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594998551.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.609 kcal (2) G-P(sol) polarization free energy of solvation -65.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds