Wall clock time and date at job start Tue Mar 31 2020 11:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46775 * 2 1 4 4 C 1.53001 * 109.47100 * 240.00673 * 2 1 3 5 5 C 1.50698 * 109.47558 * 120.00266 * 2 1 3 6 6 C 1.38260 * 119.99559 * 359.97438 * 5 2 1 7 7 C 1.38212 * 119.99650 * 179.71963 * 6 5 2 8 8 C 1.38255 * 120.00300 * 0.28729 * 7 6 5 9 9 C 1.38216 * 119.99744 * 359.97134 * 8 7 6 10 10 C 1.50707 * 119.99835 * 179.97438 * 9 8 7 11 11 N 1.46892 * 109.47259 * 90.00344 * 10 9 8 12 12 C 1.46967 * 110.99831 * 293.79796 * 11 10 9 13 13 C 1.53052 * 109.36334 * 176.81439 * 12 11 10 14 14 N 1.46951 * 109.36709 * 58.39795 * 13 12 11 15 15 C 1.46896 * 111.00350 * 176.80864 * 14 13 12 16 16 C 1.50702 * 109.47339 * 293.80822 * 15 14 13 17 17 H 1.08000 * 119.99542 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00362 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99642 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00426 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47211 * 89.99475 * 20 18 16 22 22 H 1.48500 * 109.47361 * 209.99968 * 20 18 16 23 23 H 1.48501 * 109.47008 * 329.99439 * 20 18 16 24 24 C 1.46959 * 110.88284 * 300.68303 * 14 13 12 25 25 C 1.46949 * 111.00082 * 170.00084 * 11 10 9 26 26 C 1.38208 * 120.00322 * 180.21410 * 5 2 1 27 27 H 1.09005 * 109.47030 * 299.99741 * 1 2 3 28 28 H 1.08990 * 109.47217 * 59.99592 * 1 2 3 29 29 H 1.09002 * 109.46604 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46882 * 179.97438 * 3 2 1 31 31 H 1.08990 * 109.47581 * 300.00185 * 3 2 1 32 32 H 1.09005 * 109.47130 * 60.00320 * 3 2 1 33 33 H 1.09002 * 109.46978 * 299.99264 * 4 2 1 34 34 H 1.08995 * 109.47074 * 59.99373 * 4 2 1 35 35 H 1.08996 * 109.46703 * 180.02562 * 4 2 1 36 36 H 1.08002 * 120.00476 * 0.02562 * 6 5 2 37 37 H 1.07999 * 119.99941 * 180.25946 * 7 6 5 38 38 H 1.08005 * 120.00230 * 179.97438 * 8 7 6 39 39 H 1.09005 * 109.46541 * 210.00357 * 10 9 8 40 40 H 1.08992 * 109.46834 * 329.99730 * 10 9 8 41 41 H 1.08999 * 109.48731 * 296.77809 * 12 11 10 42 42 H 1.08999 * 109.48940 * 56.84352 * 12 11 10 43 43 H 1.09004 * 109.48776 * 298.43385 * 13 12 11 44 44 H 1.09000 * 109.50566 * 178.37863 * 13 12 11 45 45 H 1.09010 * 109.46758 * 53.80085 * 15 14 13 46 46 H 1.08993 * 109.47474 * 173.79763 * 15 14 13 47 47 H 0.97005 * 119.99864 * 180.02562 * 19 18 16 48 48 H 1.09003 * 109.48186 * 299.34888 * 24 14 13 49 49 H 1.08999 * 109.48996 * 179.28766 * 24 14 13 50 50 H 1.08998 * 109.48975 * 303.14972 * 25 11 10 51 51 H 1.08997 * 109.49137 * 63.21626 * 25 11 10 52 52 H 1.07999 * 119.99944 * 0.06631 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1340 -1.2355 2.1407 7 6 1.5948 -1.8921 3.2662 8 6 2.9540 -2.0188 3.4848 9 6 3.8522 -1.4892 2.5774 10 6 5.3338 -1.6268 2.8160 11 7 5.8164 -2.8680 2.1962 12 6 5.2471 -4.0465 2.8648 13 6 5.7101 -5.3134 2.1416 14 7 7.1786 -5.3675 2.1454 15 6 7.6613 -6.6089 1.5257 16 6 7.2601 -7.7850 2.3783 17 1 6.7027 -7.6261 3.2896 18 6 7.6055 -9.0637 1.9955 19 7 8.2848 -9.2570 0.8860 20 14 7.1089 -10.5215 3.0527 21 1 5.7784 -11.0176 2.6181 22 1 8.1136 -11.6050 2.9053 23 1 7.0399 -10.1007 4.4751 24 6 7.7480 -4.1891 1.4769 25 6 7.2849 -2.9222 2.2001 26 6 3.3913 -0.8328 1.4513 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6768 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7215 -1.2490 36 1 0.0721 -1.1368 1.9699 37 1 0.8930 -2.3059 3.9752 38 1 3.3141 -2.5315 4.3645 39 1 5.8532 -0.7752 2.3762 40 1 5.5280 -1.6565 3.8881 41 1 5.5846 -4.0753 3.9008 42 1 4.1589 -3.9895 2.8380 43 1 5.3495 -5.2973 1.1131 44 1 5.3125 -6.1902 2.6527 45 1 7.2232 -6.7136 0.5330 46 1 8.7474 -6.5746 1.4417 47 1 8.5275 -10.1567 0.6165 48 1 7.4104 -4.1605 0.4408 49 1 8.8361 -4.2462 1.5037 50 1 7.6825 -2.0457 1.6886 51 1 7.6456 -2.9382 3.2285 52 1 4.0930 -0.4184 0.7427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595391221.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:16 Heat of formation + Delta-G solvation = 20.182024 kcal Electronic energy + Delta-G solvation = -26840.415929 eV Core-core repulsion = 23417.923123 eV Total energy + Delta-G solvation = -3422.492805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.15388 -38.65105 -36.68265 -34.95213 -32.62164 -31.46031 -30.50396 -29.94026 -28.41737 -27.47686 -27.43204 -25.75330 -23.75821 -23.22452 -22.78192 -21.49130 -21.07265 -19.12675 -18.90865 -16.89121 -16.29439 -15.84762 -15.51848 -15.19931 -14.65172 -14.53199 -14.44833 -14.32101 -14.14022 -13.94571 -13.69112 -13.43619 -13.32519 -12.81352 -12.77823 -12.31527 -12.18661 -12.04566 -11.94398 -11.89507 -11.80729 -11.65455 -11.42683 -11.17021 -11.11115 -10.82983 -10.74751 -10.69769 -10.63905 -10.55832 -10.31942 -10.23456 -9.68884 -9.15509 -8.78470 -8.66442 -8.41881 -8.07070 -7.19171 -6.00715 -4.01995 1.32661 1.40214 3.32822 3.38827 3.43153 3.65414 4.31148 4.38799 4.44094 4.52922 4.78352 4.83454 4.93255 5.00060 5.05250 5.09954 5.26005 5.32766 5.34778 5.38290 5.40757 5.41967 5.52756 5.53714 5.59918 5.61101 5.66112 5.66906 5.79294 5.81614 5.87111 5.88515 5.95263 5.99610 6.06366 6.07729 6.11715 6.12607 6.23374 6.45819 6.48278 6.57913 6.62331 6.66103 6.73772 6.99500 7.22718 7.27112 7.38548 7.42112 7.82478 8.11979 8.24208 8.58341 9.05578 9.62111 11.10225 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.002702 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.329732 B =10360.251702 C =10605.952409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.029 4.029 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.073 4.073 6 C -0.125 4.125 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.068 4.068 10 C 0.092 3.908 11 N -0.533 5.533 12 C 0.056 3.944 13 C 0.069 3.931 14 N -0.539 5.539 15 C 0.194 3.806 16 C -0.506 4.506 17 H 0.062 0.938 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.057 3.943 25 C 0.061 3.939 26 C -0.094 4.094 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.027 0.973 44 H 0.085 0.915 45 H -0.009 1.009 46 H 0.029 0.971 47 H 0.261 0.739 48 H 0.030 0.970 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.039 0.961 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.633 21.867 0.375 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.073 4.073 6 C -0.143 4.143 7 C -0.137 4.137 8 C -0.136 4.136 9 C -0.069 4.069 10 C -0.035 4.035 11 N -0.258 5.258 12 C -0.072 4.072 13 C -0.060 4.060 14 N -0.264 5.264 15 C 0.069 3.931 16 C -0.545 4.545 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.072 4.072 25 C -0.067 4.067 26 C -0.112 4.112 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.103 0.897 45 H 0.009 0.991 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.048 0.952 49 H 0.090 0.910 50 H 0.088 0.912 51 H 0.057 0.943 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.517 21.711 0.263 25.576 hybrid contribution -0.171 -1.001 0.490 1.128 sum -13.688 20.710 0.754 24.837 Atomic orbital electron populations 1.21956 0.94364 1.01983 1.01716 1.19487 0.95501 0.94968 0.92939 1.21884 1.01279 0.94667 1.01644 1.21892 1.01496 1.00356 0.95884 1.19762 0.93309 0.98590 0.95662 1.21117 0.99525 0.99119 0.94562 1.21077 0.95443 0.99450 0.97747 1.21068 0.93185 0.99810 0.99510 1.19728 0.94965 0.97436 0.94740 1.21016 0.91436 0.93602 0.97444 1.62191 1.07895 1.01346 1.54335 1.22320 0.98943 0.89880 0.96029 1.21969 0.89402 0.96064 0.98543 1.62280 1.06313 1.02983 1.54855 1.19693 0.95661 0.84866 0.92905 1.21155 1.35022 0.90321 1.07991 0.91965 1.24991 0.95336 0.99017 0.95297 1.69965 1.39206 1.21755 1.22926 0.86511 0.78144 0.82071 0.80779 1.20730 1.21261 1.19803 1.22053 0.99133 0.90324 0.95687 1.22163 0.86723 0.98194 0.99571 1.20780 0.94678 0.99170 0.96577 0.92396 0.92501 0.92242 0.92359 0.92474 0.92637 0.92378 0.92531 0.92181 0.86019 0.86342 0.86415 0.90357 0.94186 0.94543 0.90827 0.95435 0.89698 0.99113 0.95260 0.92950 0.95180 0.91040 0.91237 0.94319 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 7.13 37.16 0.26 -0.79 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.05 8.28 37.16 0.31 -0.74 16 4 C -0.14 -1.24 8.29 37.16 0.31 -0.93 16 5 C -0.07 -0.77 4.76 -104.63 -0.50 -1.27 16 6 C -0.13 -1.29 8.98 -39.58 -0.36 -1.64 16 7 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 8 C -0.12 -1.37 7.92 -39.58 -0.31 -1.68 16 9 C -0.07 -0.83 4.89 -104.62 -0.51 -1.34 16 10 C 0.09 1.14 5.12 -4.98 -0.03 1.12 16 11 N -0.53 -8.10 4.70 -235.91 -1.11 -9.21 16 12 C 0.06 0.93 5.25 -3.76 -0.02 0.91 16 13 C 0.07 1.41 5.43 -3.77 -0.02 1.39 16 14 N -0.54 -12.02 4.70 -235.91 -1.11 -13.13 16 15 C 0.19 5.17 4.72 -4.98 -0.02 5.15 16 16 C -0.51 -14.42 8.47 -34.44 -0.29 -14.71 16 17 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 20 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 25 C 0.06 0.94 5.61 -3.77 -0.02 0.92 16 26 C -0.09 -1.07 8.37 -39.59 -0.33 -1.40 16 27 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.45 7.52 -51.93 -0.39 0.06 16 30 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.57 7.40 -51.93 -0.38 0.18 16 36 H 0.12 1.04 5.90 -52.49 -0.31 0.73 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.30 7.99 -52.48 -0.42 0.88 16 39 H 0.08 0.86 7.97 -51.93 -0.41 0.45 16 40 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.15 5.95 -51.93 -0.31 0.84 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 1.85 6.79 -51.93 -0.35 1.49 16 45 H -0.01 -0.26 8.12 -51.92 -0.42 -0.68 16 46 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 50 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 51 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 52 H 0.12 1.29 7.10 -52.49 -0.37 0.92 16 LS Contribution 397.36 15.07 5.99 5.99 Total: -1.00 -30.50 397.36 -12.25 -42.75 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -9.56 Total: -2.37 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -2.18 Total: -14.54 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -1.48 Total: -48.65 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.50 -12.25 -42.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391221.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.929 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds