Wall clock time and date at job start Tue Mar 31 2020 11:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46775 * 2 1 4 4 C 1.53001 * 109.47100 * 240.00673 * 2 1 3 5 5 C 1.50698 * 109.47558 * 120.00266 * 2 1 3 6 6 C 1.38260 * 119.99559 * 359.97438 * 5 2 1 7 7 C 1.38212 * 119.99650 * 179.71963 * 6 5 2 8 8 C 1.38255 * 120.00300 * 0.28729 * 7 6 5 9 9 C 1.38216 * 119.99744 * 359.97134 * 8 7 6 10 10 C 1.50707 * 119.99835 * 179.97438 * 9 8 7 11 11 N 1.46892 * 109.47259 * 90.00344 * 10 9 8 12 12 C 1.46967 * 110.99831 * 293.79796 * 11 10 9 13 13 C 1.53052 * 109.36334 * 176.81439 * 12 11 10 14 14 N 1.46951 * 109.36709 * 58.39795 * 13 12 11 15 15 C 1.46896 * 111.00350 * 176.80864 * 14 13 12 16 16 C 1.50702 * 109.47339 * 293.80822 * 15 14 13 17 17 H 1.08000 * 119.99542 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00362 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99642 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00426 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47211 * 89.99475 * 20 18 16 22 22 H 1.48500 * 109.47361 * 209.99968 * 20 18 16 23 23 H 1.48501 * 109.47008 * 329.99439 * 20 18 16 24 24 C 1.46959 * 110.88284 * 300.68303 * 14 13 12 25 25 C 1.46949 * 111.00082 * 170.00084 * 11 10 9 26 26 C 1.38208 * 120.00322 * 180.21410 * 5 2 1 27 27 H 1.09005 * 109.47030 * 299.99741 * 1 2 3 28 28 H 1.08990 * 109.47217 * 59.99592 * 1 2 3 29 29 H 1.09002 * 109.46604 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46882 * 179.97438 * 3 2 1 31 31 H 1.08990 * 109.47581 * 300.00185 * 3 2 1 32 32 H 1.09005 * 109.47130 * 60.00320 * 3 2 1 33 33 H 1.09002 * 109.46978 * 299.99264 * 4 2 1 34 34 H 1.08995 * 109.47074 * 59.99373 * 4 2 1 35 35 H 1.08996 * 109.46703 * 180.02562 * 4 2 1 36 36 H 1.08002 * 120.00476 * 0.02562 * 6 5 2 37 37 H 1.07999 * 119.99941 * 180.25946 * 7 6 5 38 38 H 1.08005 * 120.00230 * 179.97438 * 8 7 6 39 39 H 1.09005 * 109.46541 * 210.00357 * 10 9 8 40 40 H 1.08992 * 109.46834 * 329.99730 * 10 9 8 41 41 H 1.08999 * 109.48731 * 296.77809 * 12 11 10 42 42 H 1.08999 * 109.48940 * 56.84352 * 12 11 10 43 43 H 1.09004 * 109.48776 * 298.43385 * 13 12 11 44 44 H 1.09000 * 109.50566 * 178.37863 * 13 12 11 45 45 H 1.09010 * 109.46758 * 53.80085 * 15 14 13 46 46 H 1.08993 * 109.47474 * 173.79763 * 15 14 13 47 47 H 0.97005 * 119.99864 * 180.02562 * 19 18 16 48 48 H 1.09003 * 109.48186 * 299.34888 * 24 14 13 49 49 H 1.08999 * 109.48996 * 179.28766 * 24 14 13 50 50 H 1.08998 * 109.48975 * 303.14972 * 25 11 10 51 51 H 1.08997 * 109.49137 * 63.21626 * 25 11 10 52 52 H 1.07999 * 119.99944 * 0.06631 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1340 -1.2355 2.1407 7 6 1.5948 -1.8921 3.2662 8 6 2.9540 -2.0188 3.4848 9 6 3.8522 -1.4892 2.5774 10 6 5.3338 -1.6268 2.8160 11 7 5.8164 -2.8680 2.1962 12 6 5.2471 -4.0465 2.8648 13 6 5.7101 -5.3134 2.1416 14 7 7.1786 -5.3675 2.1454 15 6 7.6613 -6.6089 1.5257 16 6 7.2601 -7.7850 2.3783 17 1 6.7027 -7.6261 3.2896 18 6 7.6055 -9.0637 1.9955 19 7 8.2848 -9.2570 0.8860 20 14 7.1089 -10.5215 3.0527 21 1 5.7784 -11.0176 2.6181 22 1 8.1136 -11.6050 2.9053 23 1 7.0399 -10.1007 4.4751 24 6 7.7480 -4.1891 1.4769 25 6 7.2849 -2.9222 2.2001 26 6 3.3913 -0.8328 1.4513 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6768 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7215 -1.2490 36 1 0.0721 -1.1368 1.9699 37 1 0.8930 -2.3059 3.9752 38 1 3.3141 -2.5315 4.3645 39 1 5.8532 -0.7752 2.3762 40 1 5.5280 -1.6565 3.8881 41 1 5.5846 -4.0753 3.9008 42 1 4.1589 -3.9895 2.8380 43 1 5.3495 -5.2973 1.1131 44 1 5.3125 -6.1902 2.6527 45 1 7.2232 -6.7136 0.5330 46 1 8.7474 -6.5746 1.4417 47 1 8.5275 -10.1567 0.6165 48 1 7.4104 -4.1605 0.4408 49 1 8.8361 -4.2462 1.5037 50 1 7.6825 -2.0457 1.6886 51 1 7.6456 -2.9382 3.2285 52 1 4.0930 -0.4184 0.7427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595391221.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:15 Heat of formation + Delta-G solvation = 3.061735 kcal Electronic energy + Delta-G solvation = -26841.158320 eV Core-core repulsion = 23417.923123 eV Total energy + Delta-G solvation = -3423.235197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02382 -39.98163 -37.63870 -36.35166 -34.61648 -32.58792 -31.88149 -30.85907 -29.88303 -28.42985 -28.08159 -27.23907 -25.22048 -24.50826 -23.73059 -23.25107 -22.06756 -20.62717 -19.66930 -18.50433 -17.68622 -17.29678 -16.46340 -16.44368 -16.07794 -15.86043 -15.60189 -15.49538 -15.15603 -15.11759 -14.95546 -14.79930 -14.37129 -14.09915 -13.76400 -13.55791 -13.43437 -13.17676 -13.01337 -12.82387 -12.80140 -12.68766 -12.56210 -12.52589 -12.47861 -12.30752 -12.19146 -12.11252 -11.87778 -11.78626 -11.57263 -11.36229 -11.28750 -11.18250 -10.63727 -9.65009 -9.51983 -9.26812 -9.04756 -8.22295 -6.32937 0.48002 0.57025 1.39663 1.41373 1.53038 2.38938 2.73188 3.09689 3.20544 3.28529 3.67069 3.78917 3.97364 3.99959 4.12081 4.15149 4.19392 4.28290 4.30706 4.35982 4.42261 4.45262 4.51684 4.59940 4.66019 4.70431 4.72645 4.80108 4.84681 4.85061 4.92063 4.95337 5.00497 5.02516 5.03956 5.05680 5.12667 5.19111 5.20008 5.23598 5.25945 5.32695 5.39886 5.45658 5.61888 5.66224 5.75431 5.81175 5.99869 6.05531 6.08852 6.19949 6.32657 6.60472 6.82682 7.36862 8.89139 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.002702 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.329732 B =10360.251702 C =10605.952409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 C -0.135 4.135 4 C -0.138 4.138 5 C -0.078 4.078 6 C -0.130 4.130 7 C -0.125 4.125 8 C -0.130 4.130 9 C -0.083 4.083 10 C 0.097 3.903 11 N -0.542 5.542 12 C 0.073 3.927 13 C 0.072 3.928 14 N -0.544 5.544 15 C 0.209 3.791 16 C -0.524 4.524 17 H 0.062 0.938 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.971 3.029 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.264 1.264 24 C 0.054 3.946 25 C 0.071 3.929 26 C -0.103 4.103 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.085 0.915 43 H 0.010 0.990 44 H 0.066 0.934 45 H -0.043 1.043 46 H 0.005 0.995 47 H 0.265 0.735 48 H 0.019 0.981 49 H 0.073 0.927 50 H 0.101 0.899 51 H 0.041 0.959 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.087 23.209 1.380 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 C -0.192 4.192 4 C -0.195 4.195 5 C -0.078 4.078 6 C -0.148 4.148 7 C -0.143 4.143 8 C -0.149 4.149 9 C -0.083 4.083 10 C -0.029 4.029 11 N -0.267 5.267 12 C -0.055 4.055 13 C -0.057 4.057 14 N -0.269 5.269 15 C 0.083 3.917 16 C -0.562 4.562 17 H 0.080 0.920 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.188 1.188 24 C -0.074 4.074 25 C -0.057 4.057 26 C -0.122 4.122 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.139 0.861 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.028 0.972 44 H 0.085 0.915 45 H -0.025 1.025 46 H 0.023 0.977 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.091 0.909 50 H 0.119 0.881 51 H 0.059 0.941 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.980 23.086 1.275 27.550 hybrid contribution 0.263 -1.358 0.111 1.387 sum -14.717 21.728 1.386 26.280 Atomic orbital electron populations 1.21944 0.93289 1.02035 1.02590 1.19533 0.96378 0.95230 0.91778 1.21860 1.01044 0.94017 1.02281 1.21882 1.00914 0.99882 0.96851 1.20034 0.93096 0.98347 0.96340 1.21400 1.00507 0.98583 0.94297 1.21348 0.95470 0.99236 0.98238 1.21208 0.93738 1.00203 0.99733 1.19782 0.94856 0.98317 0.95354 1.21043 0.91838 0.92351 0.97698 1.62153 1.07704 1.01960 1.54844 1.22083 0.99529 0.88658 0.95268 1.21932 0.88137 0.97763 0.97819 1.62228 1.07545 1.02502 1.54634 1.19345 0.93874 0.87076 0.91399 1.21438 1.35257 0.91326 1.08189 0.91959 1.25947 0.95027 1.02171 0.96583 1.70096 1.40122 1.22710 1.24625 0.85358 0.78051 0.77985 0.79093 1.19760 1.20579 1.18818 1.22172 0.99248 0.90610 0.95409 1.22096 0.86997 0.97117 0.99465 1.20902 0.95334 0.99418 0.96546 0.91795 0.91401 0.92591 0.92757 0.91255 0.92565 0.93656 0.91111 0.93081 0.84305 0.84618 0.86131 0.88662 0.93573 0.94499 0.89658 0.97197 0.91543 1.02497 0.97695 0.92625 0.96290 0.90854 0.88073 0.94117 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 7.13 71.98 0.51 -1.27 16 2 C -0.03 -0.45 0.85 -52.93 -0.05 -0.50 16 3 C -0.13 -1.79 8.28 71.98 0.60 -1.20 16 4 C -0.14 -2.31 8.29 71.98 0.60 -1.71 16 5 C -0.08 -1.53 4.76 -19.87 -0.09 -1.62 16 6 C -0.13 -2.45 8.98 22.27 0.20 -2.25 16 7 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 8 C -0.13 -2.85 7.92 22.27 0.18 -2.68 16 9 C -0.08 -1.89 4.89 -19.86 -0.10 -1.98 16 10 C 0.10 2.21 5.12 85.56 0.44 2.65 16 11 N -0.54 -15.73 4.70 -900.29 -4.23 -19.96 16 12 C 0.07 2.37 5.25 86.31 0.45 2.83 16 13 C 0.07 3.03 5.43 86.31 0.47 3.49 16 14 N -0.54 -24.94 4.70 -900.28 -4.23 -29.17 16 15 C 0.21 11.70 4.72 85.56 0.40 12.11 16 16 C -0.52 -30.61 8.47 25.60 0.22 -30.39 16 17 H 0.06 3.56 7.13 -2.91 -0.02 3.54 16 18 C 0.00 0.04 5.46 84.65 0.46 0.50 16 19 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 20 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 24 C 0.05 2.05 5.61 86.31 0.48 2.54 16 25 C 0.07 2.07 5.61 86.31 0.48 2.55 16 26 C -0.10 -2.24 8.37 22.27 0.19 -2.06 16 27 H 0.06 0.73 7.51 -2.38 -0.02 0.71 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.74 7.52 -2.39 -0.02 0.72 16 30 H 0.05 0.76 7.38 -2.38 -0.02 0.74 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 0.93 7.40 -2.39 -0.02 0.91 16 36 H 0.14 2.06 5.90 -2.91 -0.02 2.04 16 37 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.12 2.49 7.99 -2.91 -0.02 2.47 16 39 H 0.10 1.85 7.97 -2.38 -0.02 1.83 16 40 H 0.05 1.01 8.06 -2.39 -0.02 0.99 16 41 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.09 2.60 5.95 -2.39 -0.01 2.58 16 43 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 44 H 0.07 2.99 6.79 -2.39 -0.02 2.97 16 45 H -0.04 -2.61 8.12 -2.38 -0.02 -2.63 16 46 H 0.00 0.30 8.03 -2.39 -0.02 0.28 16 47 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 48 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.07 2.71 8.07 -2.39 -0.02 2.69 16 50 H 0.10 2.35 8.07 -2.39 -0.02 2.33 16 51 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.12 2.49 7.10 -2.91 -0.02 2.47 16 Total: -1.00 -66.74 397.36 0.37 -66.37 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.85 Total: 14.19 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 5.67 Total: -21.22 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -8.18 Total: -106.41 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -66.74 0.37 -66.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391221.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.436 kcal (2) G-P(sol) polarization free energy of solvation -66.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds