Wall clock time and date at job start Tue Mar 31 2020 10:58:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.50698 * 109.47166 * 2 1
4 4 N 1.31890 * 119.62034 * 270.26994 * 3 2 1
5 5 C 1.31854 * 121.72490 * 180.30806 * 4 3 2
6 6 C 1.50699 * 119.61735 * 179.67977 * 5 4 3
7 7 C 1.53006 * 109.46844 * 95.02472 * 6 5 4
8 8 C 1.52995 * 109.47369 * 215.02355 * 6 5 4
9 9 C 1.38228 * 120.76400 * 359.71135 * 5 4 3
10 10 C 1.38627 * 119.16026 * 359.97438 * 9 5 4
11 11 C 1.38182 * 119.61365 * 90.00230 * 3 2 1
12 12 C 1.50691 * 120.42162 * 359.97213 * 11 3 2
13 13 N 1.46909 * 109.46985 * 79.72898 * 12 11 3
14 14 C 1.46846 * 111.00162 * 45.78678 * 13 12 11
15 15 C 1.53030 * 109.52377 * 185.84294 * 14 13 12
16 16 C 1.53123 * 109.28009 * 300.82027 * 15 14 13
17 17 C 1.53118 * 109.15585 * 57.65675 * 16 15 14
18 18 H 1.09002 * 109.53946 * 62.30558 * 17 16 15
19 19 C 1.50702 * 109.50203 * 182.40596 * 17 16 15
20 20 H 1.08001 * 120.00346 * 119.80365 * 19 17 16
21 21 C 1.37871 * 119.99901 * 299.80074 * 19 17 16
22 22 N 1.31515 * 120.00384 * 0.02562 * 21 19 17
23 23 Si 1.86804 * 120.00092 * 179.97438 * 21 19 17
24 24 H 1.48500 * 109.47214 * 359.97438 * 23 21 19
25 25 H 1.48502 * 109.47219 * 120.00462 * 23 21 19
26 26 H 1.48503 * 109.46945 * 240.00215 * 23 21 19
27 27 C 1.46846 * 111.00243 * 170.00207 * 13 12 11
28 28 H 1.09004 * 109.47117 * 300.00083 * 1 2 3
29 29 H 1.09007 * 109.47091 * 59.99456 * 1 2 3
30 30 H 1.08995 * 109.47250 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.46959 * 240.00681 * 2 1 3
32 32 H 1.08995 * 109.47126 * 120.00133 * 2 1 3
33 33 H 1.09003 * 109.47456 * 335.03067 * 6 5 4
34 34 H 1.09003 * 109.46608 * 60.00075 * 7 6 5
35 35 H 1.08997 * 109.46837 * 179.97438 * 7 6 5
36 36 H 1.08995 * 109.46969 * 300.00415 * 7 6 5
37 37 H 1.08997 * 109.47111 * 60.00496 * 8 6 5
38 38 H 1.09007 * 109.47496 * 180.02562 * 8 6 5
39 39 H 1.08999 * 109.47612 * 300.00274 * 8 6 5
40 40 H 1.08002 * 120.41870 * 180.02562 * 9 5 4
41 41 H 1.07999 * 120.78696 * 179.97438 * 10 9 5
42 42 H 1.09000 * 109.47159 * 319.72760 * 12 11 3
43 43 H 1.09003 * 109.47341 * 199.72363 * 12 11 3
44 44 H 1.08999 * 109.46373 * 305.86398 * 14 13 12
45 45 H 1.08998 * 109.45881 * 65.82485 * 14 13 12
46 46 H 1.09003 * 109.50272 * 180.88314 * 15 14 13
47 47 H 1.09003 * 109.50540 * 60.76497 * 15 14 13
48 48 H 1.08993 * 109.52379 * 297.75279 * 16 15 14
49 49 H 1.08996 * 109.52598 * 177.55713 * 16 15 14
50 50 H 0.96998 * 120.00420 * 179.97438 * 22 21 19
51 51 H 1.08998 * 109.45759 * 294.17597 * 27 13 12
52 52 H 1.09004 * 109.46280 * 54.13953 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2445 2.0372 -1.1465
5 6 2.6892 3.2775 -1.1950
6 6 2.9219 3.9336 -2.5316
7 6 1.6859 4.7461 -2.9229
8 6 4.1345 4.8620 -2.4398
9 6 2.9450 3.9828 -0.0340
10 6 2.7277 3.3700 1.1903
11 6 2.2600 2.0645 1.2013
12 6 2.0085 1.3551 2.5068
13 7 3.1402 0.4681 2.8079
14 6 4.4197 1.1547 2.5896
15 6 5.5703 0.1622 2.7711
16 6 5.5171 -0.4201 4.1863
17 6 4.1563 -1.0873 4.4043
18 1 4.0381 -1.9124 3.7019
19 6 4.0733 -1.6116 5.8148
20 1 3.3058 -1.2477 6.4819
21 6 4.9770 -2.5558 6.2536
22 7 5.9118 -2.9987 5.4415
23 14 4.8745 -3.2052 8.0021
24 1 3.7437 -2.5505 8.7078
25 1 4.6568 -4.6738 7.9728
26 1 6.1420 -2.9068 8.7160
27 6 3.0467 -0.0586 4.1755
28 1 -0.3633 0.5139 0.8900
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 1.8933 -0.5137 -0.8901
32 1 1.8933 -0.5138 0.8899
33 1 3.1068 3.1678 -3.2850
34 1 1.5011 5.5118 -2.1695
35 1 1.8544 5.2210 -3.8894
36 1 0.8221 4.0847 -2.9883
37 1 5.0150 4.2832 -2.1610
38 1 4.3026 5.3369 -3.4064
39 1 3.9496 5.6278 -1.6864
40 1 3.3087 4.9986 -0.0802
41 1 2.9192 3.8964 2.1137
42 1 1.0951 0.7654 2.4298
43 1 1.9006 2.0899 3.3047
44 1 4.4462 1.5605 1.5783
45 1 4.5235 1.9667 3.3093
46 1 6.5205 0.6757 2.6244
47 1 5.4748 -0.6429 2.0425
48 1 5.6516 0.3796 4.9145
49 1 6.3087 -1.1598 4.3058
50 1 6.5479 -3.6628 5.7503
51 1 3.1570 0.7591 4.8878
52 1 2.0759 -0.5340 4.3161
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000595622474.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:58:49
Heat of formation + Delta-G solvation = 7.540652 kcal
Electronic energy + Delta-G solvation = -27424.818221 eV
Core-core repulsion = 24001.777245 eV
Total energy + Delta-G solvation = -3423.040976 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.73384 -38.24788 -36.24113 -34.05182 -33.57256 -32.43123 -31.27212 -29.94876
-29.19655 -27.40811 -26.18225 -24.95400 -24.28317 -23.19091 -21.83910 -21.70438
-21.02653 -19.73685 -18.60837 -16.87556 -16.47652 -16.14467 -15.26506 -15.18918
-14.69237 -14.49550 -14.25398 -14.03408 -13.77949 -13.60431 -13.43566 -13.17167
-13.13783 -12.98747 -12.62321 -12.42479 -12.22211 -12.00085 -11.87349 -11.75588
-11.70938 -11.45343 -11.32038 -11.09149 -10.96672 -10.90350 -10.77568 -10.68344
-10.58740 -10.13462 -9.85801 -9.59935 -9.47960 -9.30002 -9.04661 -8.69701
-8.58351 -8.29950 -7.67066 -5.97342 -4.03545 1.14445 1.34571 3.29660
3.37932 3.41207 3.73788 4.08497 4.40782 4.54781 4.61931 4.75246
4.88951 4.92830 4.99201 5.05020 5.12733 5.32863 5.33979 5.37208
5.43122 5.50358 5.52012 5.57792 5.62121 5.64178 5.72015 5.77598
5.82782 5.90678 5.96489 6.00992 6.01459 6.07718 6.08641 6.13294
6.24631 6.28646 6.38995 6.41667 6.49026 6.50705 6.72817 6.74903
6.81490 6.96104 7.21838 7.38955 7.64397 7.74423 7.79314 8.08212
8.12057 8.17733 8.47929 9.00767 9.60880 11.08633
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.023458 B = 0.002979 C = 0.002822
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.333703 B = 9396.196747 C = 9918.862587
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.083 4.083
3 C 0.159 3.841
4 N -0.484 5.484
5 C 0.132 3.868
6 C -0.045 4.045
7 C -0.139 4.139
8 C -0.147 4.147
9 C -0.179 4.179
10 C -0.069 4.069
11 C -0.125 4.125
12 C 0.094 3.906
13 N -0.529 5.529
14 C 0.064 3.936
15 C -0.117 4.117
16 C -0.110 4.110
17 C 0.056 3.944
18 H 0.035 0.965
19 C -0.514 4.514
20 H 0.054 0.946
21 C 0.063 3.937
22 N -0.888 5.888
23 Si 0.889 3.111
24 H -0.274 1.274
25 H -0.284 1.284
26 H -0.285 1.285
27 C 0.067 3.933
28 H 0.052 0.948
29 H 0.051 0.949
30 H 0.061 0.939
31 H 0.076 0.924
32 H 0.105 0.895
33 H 0.087 0.913
34 H 0.054 0.946
35 H 0.060 0.940
36 H 0.057 0.943
37 H 0.058 0.942
38 H 0.061 0.939
39 H 0.059 0.941
40 H 0.131 0.869
41 H 0.129 0.871
42 H 0.084 0.916
43 H 0.036 0.964
44 H 0.057 0.943
45 H 0.020 0.980
46 H 0.044 0.956
47 H 0.060 0.940
48 H 0.029 0.971
49 H 0.090 0.910
50 H 0.259 0.741
51 H 0.019 0.981
52 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.093 14.572 -14.092 21.476
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.121 4.121
3 C 0.021 3.979
4 N -0.192 5.192
5 C -0.007 4.007
6 C -0.064 4.064
7 C -0.197 4.197
8 C -0.204 4.204
9 C -0.199 4.199
10 C -0.096 4.096
11 C -0.128 4.128
12 C -0.034 4.034
13 N -0.254 5.254
14 C -0.064 4.064
15 C -0.155 4.155
16 C -0.148 4.148
17 C 0.037 3.963
18 H 0.053 0.947
19 C -0.553 4.553
20 H 0.072 0.928
21 C -0.138 4.138
22 N -0.526 5.526
23 Si 0.717 3.283
24 H -0.199 1.199
25 H -0.210 1.210
26 H -0.211 1.211
27 C -0.059 4.059
28 H 0.071 0.929
29 H 0.070 0.930
30 H 0.080 0.920
31 H 0.095 0.905
32 H 0.123 0.877
33 H 0.106 0.894
34 H 0.073 0.927
35 H 0.079 0.921
36 H 0.076 0.924
37 H 0.077 0.923
38 H 0.080 0.920
39 H 0.078 0.922
40 H 0.149 0.851
41 H 0.147 0.853
42 H 0.103 0.897
43 H 0.054 0.946
44 H 0.075 0.925
45 H 0.039 0.961
46 H 0.063 0.937
47 H 0.079 0.921
48 H 0.047 0.953
49 H 0.109 0.891
50 H 0.069 0.931
51 H 0.038 0.962
52 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -7.133 13.596 -15.174 21.587
hybrid contribution 0.318 0.923 2.412 2.603
sum -6.815 14.520 -12.762 20.497
Atomic orbital electron populations
1.21676 0.94702 1.01934 1.01530 1.20622 0.95833 0.90682 1.04947
1.21087 0.93496 0.96232 0.87124 1.67330 1.12796 1.09547 1.29554
1.21093 0.94597 0.90082 0.94899 1.20001 0.95918 0.97333 0.93175
1.21785 0.97105 0.99618 1.01191 1.21915 0.97249 0.99227 1.02052
1.21841 1.03826 1.01450 0.92745 1.21504 0.95573 0.94305 0.98195
1.20658 1.00859 0.94639 0.96620 1.21050 0.96128 0.94578 0.91643
1.62168 1.00683 1.34396 1.28117 1.22051 0.90153 0.95357 0.98838
1.21671 0.95014 0.97981 1.00790 1.21649 1.02800 0.99044 0.91300
1.18656 0.88998 0.92262 0.96354 0.94688 1.21176 1.14220 1.22538
0.97327 0.92818 1.24932 0.95402 0.96293 0.97216 1.69902 1.17296
1.30427 1.35020 0.86587 0.77829 0.78744 0.85111 1.19880 1.21035
1.21141 1.22347 1.01300 0.97659 0.84624 0.92853 0.92964 0.91960
0.90516 0.87660 0.89426 0.92659 0.92089 0.92373 0.92290 0.92012
0.92246 0.85140 0.85341 0.89747 0.94620 0.92456 0.96146 0.93738
0.92145 0.95253 0.89146 0.93118 0.96241 0.92119
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.61 9.79 37.16 0.36 -1.25 16
2 C -0.08 -1.12 5.57 -27.89 -0.16 -1.28 16
3 C 0.16 2.30 6.03 -82.59 -0.50 1.80 16
4 N -0.48 -6.98 10.19 -5.74 -0.06 -7.04 16
5 C 0.13 1.63 5.79 -82.59 -0.48 1.16 16
6 C -0.05 -0.43 3.23 -91.77 -0.30 -0.73 16
7 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16
8 C -0.15 -1.15 8.62 37.15 0.32 -0.83 16
9 C -0.18 -2.07 9.18 -39.44 -0.36 -2.43 16
10 C -0.07 -0.88 8.82 -39.28 -0.35 -1.22 16
11 C -0.13 -1.77 3.68 -104.49 -0.38 -2.15 16
12 C 0.09 1.40 4.55 -4.98 -0.02 1.37 16
13 N -0.53 -9.45 4.12 -236.12 -0.97 -10.42 16
14 C 0.06 1.14 4.82 -3.84 -0.02 1.12 16
15 C -0.12 -2.32 6.09 -26.65 -0.16 -2.49 16
16 C -0.11 -2.59 5.03 -26.61 -0.13 -2.73 16
17 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16
18 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16
19 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16
20 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16
21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16
22 N -0.89 -25.21 11.36 55.43 0.63 -24.58 16
23 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16
24 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16
25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16
26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
27 C 0.07 1.39 4.65 -3.84 -0.02 1.37 16
28 H 0.05 0.60 7.25 -51.93 -0.38 0.22 16
29 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16
30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
32 H 0.11 1.58 6.33 -51.93 -0.33 1.25 16
33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16
34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
39 H 0.06 0.42 6.49 -51.93 -0.34 0.08 16
40 H 0.13 1.19 6.31 -52.49 -0.33 0.86 16
41 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16
42 H 0.08 1.19 6.34 -51.93 -0.33 0.86 16
43 H 0.04 0.52 7.97 -51.93 -0.41 0.10 16
44 H 0.06 0.99 6.03 -51.93 -0.31 0.67 16
45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
46 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16
47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
48 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16
49 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16
50 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16
51 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16
52 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16
LS Contribution 394.92 15.07 5.95 5.95
Total: -1.00 -28.55 394.92 -11.40 -39.95
By element:
Atomic # 1 Polarization: 9.99 SS G_CDS: -9.48 Total: 0.51 kcal
Atomic # 6 Polarization: -18.04 SS G_CDS: -2.45 Total: -20.49 kcal
Atomic # 7 Polarization: -41.64 SS G_CDS: -0.40 Total: -42.04 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -28.55 -11.40 -39.95 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595622474.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.491 kcal
(2) G-P(sol) polarization free energy of solvation -28.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.938 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.397 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.541 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds