Wall clock time and date at job start Tue Mar 31 2020 10:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 N 1.31890 * 119.62034 * 270.26994 * 3 2 1 5 5 C 1.31854 * 121.72490 * 180.30806 * 4 3 2 6 6 C 1.50699 * 119.61735 * 179.67977 * 5 4 3 7 7 C 1.53006 * 109.46844 * 95.02472 * 6 5 4 8 8 C 1.52995 * 109.47369 * 215.02355 * 6 5 4 9 9 C 1.38228 * 120.76400 * 359.71135 * 5 4 3 10 10 C 1.38627 * 119.16026 * 359.97438 * 9 5 4 11 11 C 1.38182 * 119.61365 * 90.00230 * 3 2 1 12 12 C 1.50691 * 120.42162 * 359.97213 * 11 3 2 13 13 N 1.46909 * 109.46985 * 79.72898 * 12 11 3 14 14 C 1.46846 * 111.00162 * 45.78678 * 13 12 11 15 15 C 1.53030 * 109.52377 * 185.84294 * 14 13 12 16 16 C 1.53123 * 109.28009 * 300.82027 * 15 14 13 17 17 C 1.53118 * 109.15585 * 57.65675 * 16 15 14 18 18 H 1.09002 * 109.53946 * 62.30558 * 17 16 15 19 19 C 1.50702 * 109.50203 * 182.40596 * 17 16 15 20 20 H 1.08001 * 120.00346 * 119.80365 * 19 17 16 21 21 C 1.37871 * 119.99901 * 299.80074 * 19 17 16 22 22 N 1.31515 * 120.00384 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 120.00092 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47214 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47219 * 120.00462 * 23 21 19 26 26 H 1.48503 * 109.46945 * 240.00215 * 23 21 19 27 27 C 1.46846 * 111.00243 * 170.00207 * 13 12 11 28 28 H 1.09004 * 109.47117 * 300.00083 * 1 2 3 29 29 H 1.09007 * 109.47091 * 59.99456 * 1 2 3 30 30 H 1.08995 * 109.47250 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 240.00681 * 2 1 3 32 32 H 1.08995 * 109.47126 * 120.00133 * 2 1 3 33 33 H 1.09003 * 109.47456 * 335.03067 * 6 5 4 34 34 H 1.09003 * 109.46608 * 60.00075 * 7 6 5 35 35 H 1.08997 * 109.46837 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.46969 * 300.00415 * 7 6 5 37 37 H 1.08997 * 109.47111 * 60.00496 * 8 6 5 38 38 H 1.09007 * 109.47496 * 180.02562 * 8 6 5 39 39 H 1.08999 * 109.47612 * 300.00274 * 8 6 5 40 40 H 1.08002 * 120.41870 * 180.02562 * 9 5 4 41 41 H 1.07999 * 120.78696 * 179.97438 * 10 9 5 42 42 H 1.09000 * 109.47159 * 319.72760 * 12 11 3 43 43 H 1.09003 * 109.47341 * 199.72363 * 12 11 3 44 44 H 1.08999 * 109.46373 * 305.86398 * 14 13 12 45 45 H 1.08998 * 109.45881 * 65.82485 * 14 13 12 46 46 H 1.09003 * 109.50272 * 180.88314 * 15 14 13 47 47 H 1.09003 * 109.50540 * 60.76497 * 15 14 13 48 48 H 1.08993 * 109.52379 * 297.75279 * 16 15 14 49 49 H 1.08996 * 109.52598 * 177.55713 * 16 15 14 50 50 H 0.96998 * 120.00420 * 179.97438 * 22 21 19 51 51 H 1.08998 * 109.45759 * 294.17597 * 27 13 12 52 52 H 1.09004 * 109.46280 * 54.13953 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2445 2.0372 -1.1465 5 6 2.6892 3.2775 -1.1950 6 6 2.9219 3.9336 -2.5316 7 6 1.6859 4.7461 -2.9229 8 6 4.1345 4.8620 -2.4398 9 6 2.9450 3.9828 -0.0340 10 6 2.7277 3.3700 1.1903 11 6 2.2600 2.0645 1.2013 12 6 2.0085 1.3551 2.5068 13 7 3.1402 0.4681 2.8079 14 6 4.4197 1.1547 2.5896 15 6 5.5703 0.1622 2.7711 16 6 5.5171 -0.4201 4.1863 17 6 4.1563 -1.0873 4.4043 18 1 4.0381 -1.9124 3.7019 19 6 4.0733 -1.6116 5.8148 20 1 3.3058 -1.2477 6.4819 21 6 4.9770 -2.5558 6.2536 22 7 5.9118 -2.9987 5.4415 23 14 4.8745 -3.2052 8.0021 24 1 3.7437 -2.5505 8.7078 25 1 4.6568 -4.6738 7.9728 26 1 6.1420 -2.9068 8.7160 27 6 3.0467 -0.0586 4.1755 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.1068 3.1678 -3.2850 34 1 1.5011 5.5118 -2.1695 35 1 1.8544 5.2210 -3.8894 36 1 0.8221 4.0847 -2.9883 37 1 5.0150 4.2832 -2.1610 38 1 4.3026 5.3369 -3.4064 39 1 3.9496 5.6278 -1.6864 40 1 3.3087 4.9986 -0.0802 41 1 2.9192 3.8964 2.1137 42 1 1.0951 0.7654 2.4298 43 1 1.9006 2.0899 3.3047 44 1 4.4462 1.5605 1.5783 45 1 4.5235 1.9667 3.3093 46 1 6.5205 0.6757 2.6244 47 1 5.4748 -0.6429 2.0425 48 1 5.6516 0.3796 4.9145 49 1 6.3087 -1.1598 4.3058 50 1 6.5479 -3.6628 5.7503 51 1 3.1570 0.7591 4.8878 52 1 2.0759 -0.5340 4.3161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595622474.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:49 Heat of formation + Delta-G solvation = 7.540652 kcal Electronic energy + Delta-G solvation = -27424.818221 eV Core-core repulsion = 24001.777245 eV Total energy + Delta-G solvation = -3423.040976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73384 -38.24788 -36.24113 -34.05182 -33.57256 -32.43123 -31.27212 -29.94876 -29.19655 -27.40811 -26.18225 -24.95400 -24.28317 -23.19091 -21.83910 -21.70438 -21.02653 -19.73685 -18.60837 -16.87556 -16.47652 -16.14467 -15.26506 -15.18918 -14.69237 -14.49550 -14.25398 -14.03408 -13.77949 -13.60431 -13.43566 -13.17167 -13.13783 -12.98747 -12.62321 -12.42479 -12.22211 -12.00085 -11.87349 -11.75588 -11.70938 -11.45343 -11.32038 -11.09149 -10.96672 -10.90350 -10.77568 -10.68344 -10.58740 -10.13462 -9.85801 -9.59935 -9.47960 -9.30002 -9.04661 -8.69701 -8.58351 -8.29950 -7.67066 -5.97342 -4.03545 1.14445 1.34571 3.29660 3.37932 3.41207 3.73788 4.08497 4.40782 4.54781 4.61931 4.75246 4.88951 4.92830 4.99201 5.05020 5.12733 5.32863 5.33979 5.37208 5.43122 5.50358 5.52012 5.57792 5.62121 5.64178 5.72015 5.77598 5.82782 5.90678 5.96489 6.00992 6.01459 6.07718 6.08641 6.13294 6.24631 6.28646 6.38995 6.41667 6.49026 6.50705 6.72817 6.74903 6.81490 6.96104 7.21838 7.38955 7.64397 7.74423 7.79314 8.08212 8.12057 8.17733 8.47929 9.00767 9.60880 11.08633 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.002979 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.333703 B = 9396.196747 C = 9918.862587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C 0.159 3.841 4 N -0.484 5.484 5 C 0.132 3.868 6 C -0.045 4.045 7 C -0.139 4.139 8 C -0.147 4.147 9 C -0.179 4.179 10 C -0.069 4.069 11 C -0.125 4.125 12 C 0.094 3.906 13 N -0.529 5.529 14 C 0.064 3.936 15 C -0.117 4.117 16 C -0.110 4.110 17 C 0.056 3.944 18 H 0.035 0.965 19 C -0.514 4.514 20 H 0.054 0.946 21 C 0.063 3.937 22 N -0.888 5.888 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.285 1.285 27 C 0.067 3.933 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.029 0.971 49 H 0.090 0.910 50 H 0.259 0.741 51 H 0.019 0.981 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 14.572 -14.092 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C 0.021 3.979 4 N -0.192 5.192 5 C -0.007 4.007 6 C -0.064 4.064 7 C -0.197 4.197 8 C -0.204 4.204 9 C -0.199 4.199 10 C -0.096 4.096 11 C -0.128 4.128 12 C -0.034 4.034 13 N -0.254 5.254 14 C -0.064 4.064 15 C -0.155 4.155 16 C -0.148 4.148 17 C 0.037 3.963 18 H 0.053 0.947 19 C -0.553 4.553 20 H 0.072 0.928 21 C -0.138 4.138 22 N -0.526 5.526 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.059 4.059 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.047 0.953 49 H 0.109 0.891 50 H 0.069 0.931 51 H 0.038 0.962 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.133 13.596 -15.174 21.587 hybrid contribution 0.318 0.923 2.412 2.603 sum -6.815 14.520 -12.762 20.497 Atomic orbital electron populations 1.21676 0.94702 1.01934 1.01530 1.20622 0.95833 0.90682 1.04947 1.21087 0.93496 0.96232 0.87124 1.67330 1.12796 1.09547 1.29554 1.21093 0.94597 0.90082 0.94899 1.20001 0.95918 0.97333 0.93175 1.21785 0.97105 0.99618 1.01191 1.21915 0.97249 0.99227 1.02052 1.21841 1.03826 1.01450 0.92745 1.21504 0.95573 0.94305 0.98195 1.20658 1.00859 0.94639 0.96620 1.21050 0.96128 0.94578 0.91643 1.62168 1.00683 1.34396 1.28117 1.22051 0.90153 0.95357 0.98838 1.21671 0.95014 0.97981 1.00790 1.21649 1.02800 0.99044 0.91300 1.18656 0.88998 0.92262 0.96354 0.94688 1.21176 1.14220 1.22538 0.97327 0.92818 1.24932 0.95402 0.96293 0.97216 1.69902 1.17296 1.30427 1.35020 0.86587 0.77829 0.78744 0.85111 1.19880 1.21035 1.21141 1.22347 1.01300 0.97659 0.84624 0.92853 0.92964 0.91960 0.90516 0.87660 0.89426 0.92659 0.92089 0.92373 0.92290 0.92012 0.92246 0.85140 0.85341 0.89747 0.94620 0.92456 0.96146 0.93738 0.92145 0.95253 0.89146 0.93118 0.96241 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.79 37.16 0.36 -1.25 16 2 C -0.08 -1.12 5.57 -27.89 -0.16 -1.28 16 3 C 0.16 2.30 6.03 -82.59 -0.50 1.80 16 4 N -0.48 -6.98 10.19 -5.74 -0.06 -7.04 16 5 C 0.13 1.63 5.79 -82.59 -0.48 1.16 16 6 C -0.05 -0.43 3.23 -91.77 -0.30 -0.73 16 7 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 8 C -0.15 -1.15 8.62 37.15 0.32 -0.83 16 9 C -0.18 -2.07 9.18 -39.44 -0.36 -2.43 16 10 C -0.07 -0.88 8.82 -39.28 -0.35 -1.22 16 11 C -0.13 -1.77 3.68 -104.49 -0.38 -2.15 16 12 C 0.09 1.40 4.55 -4.98 -0.02 1.37 16 13 N -0.53 -9.45 4.12 -236.12 -0.97 -10.42 16 14 C 0.06 1.14 4.82 -3.84 -0.02 1.12 16 15 C -0.12 -2.32 6.09 -26.65 -0.16 -2.49 16 16 C -0.11 -2.59 5.03 -26.61 -0.13 -2.73 16 17 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 18 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 19 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 20 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.89 -25.21 11.36 55.43 0.63 -24.58 16 23 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.07 1.39 4.65 -3.84 -0.02 1.37 16 28 H 0.05 0.60 7.25 -51.93 -0.38 0.22 16 29 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.11 1.58 6.33 -51.93 -0.33 1.25 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.42 6.49 -51.93 -0.34 0.08 16 40 H 0.13 1.19 6.31 -52.49 -0.33 0.86 16 41 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.08 1.19 6.34 -51.93 -0.33 0.86 16 43 H 0.04 0.52 7.97 -51.93 -0.41 0.10 16 44 H 0.06 0.99 6.03 -51.93 -0.31 0.67 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 50 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 52 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 394.92 15.07 5.95 5.95 Total: -1.00 -28.55 394.92 -11.40 -39.95 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -9.48 Total: 0.51 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -2.45 Total: -20.49 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.40 Total: -42.04 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.55 -11.40 -39.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595622474.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.491 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds