Wall clock time and date at job start Tue Mar 31 2020 10:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 N 1.31890 * 119.62034 * 270.26994 * 3 2 1 5 5 C 1.31854 * 121.72490 * 180.30806 * 4 3 2 6 6 C 1.50699 * 119.61735 * 179.67977 * 5 4 3 7 7 C 1.53006 * 109.46844 * 95.02472 * 6 5 4 8 8 C 1.52995 * 109.47369 * 215.02355 * 6 5 4 9 9 C 1.38228 * 120.76400 * 359.71135 * 5 4 3 10 10 C 1.38627 * 119.16026 * 359.97438 * 9 5 4 11 11 C 1.38182 * 119.61365 * 90.00230 * 3 2 1 12 12 C 1.50691 * 120.42162 * 359.97213 * 11 3 2 13 13 N 1.46909 * 109.46985 * 79.72898 * 12 11 3 14 14 C 1.46846 * 111.00162 * 45.78678 * 13 12 11 15 15 C 1.53030 * 109.52377 * 185.84294 * 14 13 12 16 16 C 1.53123 * 109.28009 * 300.82027 * 15 14 13 17 17 C 1.53118 * 109.15585 * 57.65675 * 16 15 14 18 18 H 1.09002 * 109.53946 * 62.30558 * 17 16 15 19 19 C 1.50702 * 109.50203 * 182.40596 * 17 16 15 20 20 H 1.08001 * 120.00346 * 119.80365 * 19 17 16 21 21 C 1.37871 * 119.99901 * 299.80074 * 19 17 16 22 22 N 1.31515 * 120.00384 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 120.00092 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47214 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47219 * 120.00462 * 23 21 19 26 26 H 1.48503 * 109.46945 * 240.00215 * 23 21 19 27 27 C 1.46846 * 111.00243 * 170.00207 * 13 12 11 28 28 H 1.09004 * 109.47117 * 300.00083 * 1 2 3 29 29 H 1.09007 * 109.47091 * 59.99456 * 1 2 3 30 30 H 1.08995 * 109.47250 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 240.00681 * 2 1 3 32 32 H 1.08995 * 109.47126 * 120.00133 * 2 1 3 33 33 H 1.09003 * 109.47456 * 335.03067 * 6 5 4 34 34 H 1.09003 * 109.46608 * 60.00075 * 7 6 5 35 35 H 1.08997 * 109.46837 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.46969 * 300.00415 * 7 6 5 37 37 H 1.08997 * 109.47111 * 60.00496 * 8 6 5 38 38 H 1.09007 * 109.47496 * 180.02562 * 8 6 5 39 39 H 1.08999 * 109.47612 * 300.00274 * 8 6 5 40 40 H 1.08002 * 120.41870 * 180.02562 * 9 5 4 41 41 H 1.07999 * 120.78696 * 179.97438 * 10 9 5 42 42 H 1.09000 * 109.47159 * 319.72760 * 12 11 3 43 43 H 1.09003 * 109.47341 * 199.72363 * 12 11 3 44 44 H 1.08999 * 109.46373 * 305.86398 * 14 13 12 45 45 H 1.08998 * 109.45881 * 65.82485 * 14 13 12 46 46 H 1.09003 * 109.50272 * 180.88314 * 15 14 13 47 47 H 1.09003 * 109.50540 * 60.76497 * 15 14 13 48 48 H 1.08993 * 109.52379 * 297.75279 * 16 15 14 49 49 H 1.08996 * 109.52598 * 177.55713 * 16 15 14 50 50 H 0.96998 * 120.00420 * 179.97438 * 22 21 19 51 51 H 1.08998 * 109.45759 * 294.17597 * 27 13 12 52 52 H 1.09004 * 109.46280 * 54.13953 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2445 2.0372 -1.1465 5 6 2.6892 3.2775 -1.1950 6 6 2.9219 3.9336 -2.5316 7 6 1.6859 4.7461 -2.9229 8 6 4.1345 4.8620 -2.4398 9 6 2.9450 3.9828 -0.0340 10 6 2.7277 3.3700 1.1903 11 6 2.2600 2.0645 1.2013 12 6 2.0085 1.3551 2.5068 13 7 3.1402 0.4681 2.8079 14 6 4.4197 1.1547 2.5896 15 6 5.5703 0.1622 2.7711 16 6 5.5171 -0.4201 4.1863 17 6 4.1563 -1.0873 4.4043 18 1 4.0381 -1.9124 3.7019 19 6 4.0733 -1.6116 5.8148 20 1 3.3058 -1.2477 6.4819 21 6 4.9770 -2.5558 6.2536 22 7 5.9118 -2.9987 5.4415 23 14 4.8745 -3.2052 8.0021 24 1 3.7437 -2.5505 8.7078 25 1 4.6568 -4.6738 7.9728 26 1 6.1420 -2.9068 8.7160 27 6 3.0467 -0.0586 4.1755 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.1068 3.1678 -3.2850 34 1 1.5011 5.5118 -2.1695 35 1 1.8544 5.2210 -3.8894 36 1 0.8221 4.0847 -2.9883 37 1 5.0150 4.2832 -2.1610 38 1 4.3026 5.3369 -3.4064 39 1 3.9496 5.6278 -1.6864 40 1 3.3087 4.9986 -0.0802 41 1 2.9192 3.8964 2.1137 42 1 1.0951 0.7654 2.4298 43 1 1.9006 2.0899 3.3047 44 1 4.4462 1.5605 1.5783 45 1 4.5235 1.9667 3.3093 46 1 6.5205 0.6757 2.6244 47 1 5.4748 -0.6429 2.0425 48 1 5.6516 0.3796 4.9145 49 1 6.3087 -1.1598 4.3058 50 1 6.5479 -3.6628 5.7503 51 1 3.1570 0.7591 4.8878 52 1 2.0759 -0.5340 4.3161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595622474.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:48 Heat of formation + Delta-G solvation = -6.155690 kcal Electronic energy + Delta-G solvation = -27425.412139 eV Core-core repulsion = 24001.777245 eV Total energy + Delta-G solvation = -3423.634894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.75301 -39.73338 -37.23024 -35.63467 -34.51184 -34.01258 -32.62682 -31.65696 -30.34989 -28.02468 -27.37726 -26.90993 -25.28732 -24.39143 -23.41609 -22.71342 -22.48420 -20.65887 -20.35594 -18.43987 -17.85460 -17.20262 -16.77822 -16.50718 -16.13143 -15.60357 -15.33102 -15.13427 -15.01665 -14.86289 -14.72787 -14.54867 -14.32859 -14.03538 -13.91654 -13.77660 -13.41609 -13.29498 -12.96303 -12.86633 -12.84373 -12.74374 -12.60462 -12.53546 -12.42463 -12.03757 -11.90661 -11.85373 -11.79602 -11.74437 -11.65773 -11.39528 -10.88848 -10.68738 -10.59940 -10.37697 -10.27004 -9.60702 -9.09236 -8.06904 -6.20739 0.15226 0.36712 1.40668 1.42738 1.53625 2.43324 2.72071 3.18805 3.20480 3.23322 3.68412 3.76891 3.92808 4.02104 4.13851 4.17516 4.22927 4.25528 4.33222 4.40302 4.44139 4.49785 4.52260 4.53703 4.61320 4.67508 4.73368 4.81665 4.84496 4.87359 4.94602 4.96364 4.97817 5.01606 5.06846 5.07770 5.12185 5.17455 5.19298 5.30983 5.33109 5.37796 5.38048 5.39781 5.51415 5.53148 5.64795 5.83398 5.96612 6.12579 6.21175 6.30291 6.46429 6.92497 7.13294 7.47301 8.97980 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.002979 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.333703 B = 9396.196747 C = 9918.862587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 C 0.145 3.855 4 N -0.507 5.507 5 C 0.125 3.875 6 C -0.046 4.046 7 C -0.134 4.134 8 C -0.143 4.143 9 C -0.175 4.175 10 C -0.071 4.071 11 C -0.140 4.140 12 C 0.100 3.900 13 N -0.536 5.536 14 C 0.075 3.925 15 C -0.110 4.110 16 C -0.101 4.101 17 C 0.055 3.945 18 H -0.003 1.003 19 C -0.532 4.532 20 H 0.053 0.947 21 C 0.013 3.987 22 N -0.916 5.916 23 Si 0.953 3.047 24 H -0.266 1.266 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.082 3.918 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.159 0.841 41 H 0.146 0.854 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.027 0.973 46 H 0.063 0.937 47 H 0.045 0.955 48 H 0.023 0.977 49 H 0.056 0.944 50 H 0.259 0.741 51 H 0.019 0.981 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 17.005 -14.348 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.119 4.119 3 C 0.007 3.993 4 N -0.216 5.216 5 C -0.014 4.014 6 C -0.065 4.065 7 C -0.192 4.192 8 C -0.200 4.200 9 C -0.194 4.194 10 C -0.097 4.097 11 C -0.142 4.142 12 C -0.027 4.027 13 N -0.261 5.261 14 C -0.053 4.053 15 C -0.148 4.148 16 C -0.140 4.140 17 C 0.036 3.964 18 H 0.015 0.985 19 C -0.571 4.571 20 H 0.071 0.929 21 C -0.185 4.185 22 N -0.556 5.556 23 Si 0.779 3.221 24 H -0.190 1.190 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.045 4.045 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.177 0.823 41 H 0.163 0.837 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.046 0.954 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.042 0.958 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.037 0.963 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.729 16.038 -15.437 23.564 hybrid contribution 0.507 0.185 2.401 2.460 sum -7.222 16.222 -13.037 22.029 Atomic orbital electron populations 1.21618 0.93194 1.02639 1.01630 1.20557 0.97163 0.90514 1.03638 1.21177 0.94046 0.96499 0.87550 1.67351 1.13808 1.10788 1.29655 1.21650 0.93528 0.89589 0.96596 1.20094 0.97441 0.97505 0.91453 1.21752 0.95728 0.99260 1.02450 1.21899 0.95741 0.98912 1.03477 1.22141 1.02808 1.02552 0.91914 1.21758 0.94779 0.93746 0.99409 1.20570 1.02397 0.95460 0.95753 1.21013 0.94843 0.94367 0.92511 1.62045 1.01872 1.36008 1.26134 1.21921 0.89144 0.94559 0.99663 1.21577 0.97256 0.98207 0.97766 1.21445 1.01058 0.97915 0.93557 1.18565 0.91154 0.92339 0.94361 0.98457 1.21544 1.14149 1.22850 0.98521 0.92864 1.25715 0.95118 0.96647 1.01063 1.70048 1.17909 1.30857 1.36769 0.85584 0.77980 0.78051 0.80490 1.19038 1.20757 1.20792 1.22004 0.99628 0.96589 0.86272 0.92556 0.92928 0.90973 0.91231 0.89424 0.90516 0.91954 0.90196 0.93823 0.93295 0.90312 0.91050 0.82312 0.83655 0.89277 0.93632 0.91219 0.95433 0.91803 0.93577 0.95769 0.92505 0.93155 0.96314 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.79 71.98 0.70 -2.29 16 2 C -0.08 -2.20 5.57 29.85 0.17 -2.04 16 3 C 0.14 4.10 6.03 42.54 0.26 4.36 16 4 N -0.51 -14.25 10.19 -172.08 -1.75 -16.00 16 5 C 0.12 2.87 5.79 42.55 0.25 3.12 16 6 C -0.05 -0.79 3.23 -11.54 -0.04 -0.83 16 7 C -0.13 -1.89 9.18 71.98 0.66 -1.22 16 8 C -0.14 -1.83 8.62 71.98 0.62 -1.21 16 9 C -0.17 -3.55 9.18 22.36 0.21 -3.34 16 10 C -0.07 -1.60 8.82 22.47 0.20 -1.40 16 11 C -0.14 -3.72 3.68 -19.78 -0.07 -3.79 16 12 C 0.10 2.84 4.55 85.55 0.39 3.23 16 13 N -0.54 -18.89 4.12 -900.94 -3.71 -22.60 16 14 C 0.07 2.58 4.82 86.32 0.42 3.00 16 15 C -0.11 -4.39 6.09 30.65 0.19 -4.21 16 16 C -0.10 -4.91 5.03 30.67 0.15 -4.75 16 17 C 0.05 2.76 2.26 -11.49 -0.03 2.74 16 18 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 19 C -0.53 -29.32 8.56 25.60 0.22 -29.10 16 20 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 21 C 0.01 0.73 5.30 84.65 0.45 1.18 16 22 N -0.92 -53.51 11.36 21.45 0.24 -53.27 16 23 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 C 0.08 3.40 4.65 86.33 0.40 3.80 16 28 H 0.06 1.22 7.25 -2.39 -0.02 1.20 16 29 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.09 2.69 6.33 -2.39 -0.02 2.67 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.07 0.74 6.49 -2.39 -0.02 0.73 16 40 H 0.16 2.26 6.31 -2.91 -0.02 2.24 16 41 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 42 H 0.09 2.43 6.34 -2.39 -0.02 2.41 16 43 H 0.05 1.22 7.97 -2.39 -0.02 1.20 16 44 H 0.07 2.27 6.03 -2.39 -0.01 2.26 16 45 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.06 3.12 6.16 -2.39 -0.01 3.11 16 50 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 51 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.06 2.52 8.12 -2.39 -0.02 2.50 16 Total: -1.00 -62.74 394.92 2.80 -59.94 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.86 Total: 18.91 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 5.14 Total: -32.74 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -5.22 Total: -91.87 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -62.74 2.80 -59.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595622474.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.781 kcal (2) G-P(sol) polarization free energy of solvation -62.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds