Wall clock time and date at job start Tue Mar 31 2020 10:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50694 * 109.47539 * 2 1 4 4 N 1.31888 * 119.62146 * 82.89311 * 3 2 1 5 5 C 1.31858 * 121.72695 * 180.02562 * 4 3 2 6 6 C 1.50693 * 119.61523 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46839 * 264.99838 * 6 5 4 8 8 C 1.53002 * 109.47314 * 145.00034 * 6 5 4 9 9 C 1.38229 * 120.76215 * 0.27079 * 5 4 3 10 10 C 1.38624 * 119.16188 * 359.43667 * 9 5 4 11 11 C 1.38190 * 119.61453 * 262.87034 * 3 2 1 12 12 C 1.50695 * 120.41694 * 0.02562 * 11 3 2 13 13 N 1.46895 * 109.47272 * 268.69107 * 12 11 3 14 14 C 1.46843 * 110.99974 * 76.22709 * 13 12 11 15 15 C 1.53044 * 109.52472 * 174.16033 * 14 13 12 16 16 C 1.53117 * 109.27588 * 59.18141 * 15 14 13 17 17 C 1.53126 * 109.15936 * 302.34468 * 16 15 14 18 18 H 1.08997 * 109.49889 * 297.71291 * 17 16 15 19 19 C 1.50705 * 109.50069 * 177.59951 * 17 16 15 20 20 H 1.08004 * 119.99484 * 246.20647 * 19 17 16 21 21 C 1.37877 * 120.00069 * 66.20601 * 19 17 16 22 22 N 1.31508 * 120.00141 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 119.99851 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47183 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47480 * 119.99542 * 23 21 19 26 26 H 1.48503 * 109.46827 * 239.99937 * 23 21 19 27 27 C 1.46847 * 111.00070 * 312.01674 * 13 12 11 28 28 H 1.09010 * 109.47170 * 304.80062 * 1 2 3 29 29 H 1.09003 * 109.47302 * 64.79273 * 1 2 3 30 30 H 1.09001 * 109.47547 * 184.80008 * 1 2 3 31 31 H 1.08998 * 109.47439 * 239.99488 * 2 1 3 32 32 H 1.09000 * 109.46957 * 119.99826 * 2 1 3 33 33 H 1.09000 * 109.47735 * 24.99724 * 6 5 4 34 34 H 1.08999 * 109.47095 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47159 * 299.99958 * 7 6 5 36 36 H 1.08996 * 109.47563 * 59.99930 * 7 6 5 37 37 H 1.08999 * 109.47278 * 179.97438 * 8 6 5 38 38 H 1.09007 * 109.46526 * 299.99563 * 8 6 5 39 39 H 1.09000 * 109.46972 * 59.99224 * 8 6 5 40 40 H 1.07998 * 120.41688 * 179.70692 * 9 5 4 41 41 H 1.07994 * 120.79138 * 180.29890 * 10 9 5 42 42 H 1.08999 * 109.47456 * 28.69434 * 12 11 3 43 43 H 1.09006 * 109.46906 * 148.69411 * 12 11 3 44 44 H 1.09000 * 109.46058 * 294.17692 * 14 13 12 45 45 H 1.09002 * 109.46324 * 54.14223 * 14 13 12 46 46 H 1.09001 * 109.50189 * 179.12124 * 15 14 13 47 47 H 1.08996 * 109.49932 * 299.24073 * 15 14 13 48 48 H 1.08999 * 109.52634 * 62.24880 * 16 15 14 49 49 H 1.08999 * 109.52214 * 182.37899 * 16 15 14 50 50 H 0.97002 * 120.00039 * 180.02562 * 22 21 19 51 51 H 1.08994 * 109.46535 * 305.85541 * 27 13 12 52 52 H 1.09000 * 109.46385 * 65.82576 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.1159 2.0826 1.1377 5 6 2.5491 3.3270 1.1857 6 6 2.6259 4.0382 2.5121 7 6 1.3510 4.8566 2.7264 8 6 3.8384 4.9713 2.5211 9 6 2.9289 3.9884 0.0329 10 6 2.8608 3.3230 -1.1813 11 6 2.4006 2.0148 -1.1921 12 6 2.3018 1.2513 -2.4875 13 7 3.5758 0.5698 -2.7526 14 6 3.7209 -0.6221 -1.9073 15 6 4.9851 -1.3846 -2.3108 16 6 6.2014 -0.4689 -2.1474 17 6 6.0032 0.7871 -3.0005 18 1 5.9379 0.5064 -4.0517 19 6 7.1690 1.7208 -2.7997 20 1 7.0188 2.6765 -2.3197 21 6 8.4271 1.3548 -3.2289 22 7 8.6100 0.1908 -3.8129 23 14 9.8722 2.5119 -2.9794 24 1 9.4052 3.7485 -2.3027 25 1 10.9004 1.8460 -2.1400 26 1 10.4598 2.8613 -4.2977 27 6 4.7095 1.4865 -2.5770 28 1 -0.3634 0.5866 0.8439 29 1 -0.3634 0.4377 -0.9298 30 1 -0.3634 -1.0240 0.0860 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.7257 3.3050 3.3124 34 1 1.4066 5.3714 3.6856 35 1 1.2511 5.5899 1.9262 36 1 0.4871 4.1920 2.7200 37 1 3.8937 5.4860 3.4803 38 1 4.7467 4.3882 2.3684 39 1 3.7386 5.7045 1.7208 40 1 3.2784 5.0093 0.0781 41 1 3.1555 3.8128 -2.0975 42 1 1.5033 0.5131 -2.4143 43 1 2.0836 1.9431 -3.3012 44 1 3.7970 -0.3195 -0.8629 45 1 2.8514 -1.2667 -2.0360 46 1 5.1008 -2.2607 -1.6728 47 1 4.9036 -1.6993 -3.3511 48 1 6.3057 -0.1852 -1.1001 49 1 7.0991 -0.9941 -2.4737 50 1 9.4952 -0.0668 -4.1145 51 1 4.5581 2.3734 -3.1922 52 1 4.7811 1.7791 -1.5295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595622479.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:52 Heat of formation + Delta-G solvation = 12.877660 kcal Electronic energy + Delta-G solvation = -28088.247028 eV Core-core repulsion = 24665.437482 eV Total energy + Delta-G solvation = -3422.809546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.78990 -38.34123 -36.08080 -33.98453 -33.74628 -32.41073 -31.13658 -29.88577 -29.21749 -27.30357 -26.19492 -25.17510 -24.16538 -23.35655 -21.78024 -21.50005 -21.29725 -19.77394 -18.44922 -16.76532 -16.47955 -16.14150 -15.20283 -15.14334 -14.69038 -14.53710 -14.17616 -14.01859 -13.88963 -13.81528 -13.46112 -13.14232 -12.92932 -12.85182 -12.53828 -12.36719 -12.28357 -12.04075 -11.92787 -11.82899 -11.64688 -11.33867 -11.24033 -11.08859 -10.97781 -10.96232 -10.89949 -10.63008 -10.41738 -10.11712 -9.84494 -9.57349 -9.39983 -9.24997 -9.04445 -8.72939 -8.50672 -8.30569 -7.70104 -5.98446 -4.02759 1.22721 1.46808 3.29526 3.37712 3.41015 3.83428 4.14018 4.40973 4.59441 4.64160 4.80662 4.97162 5.00190 5.03064 5.09970 5.23505 5.30501 5.33505 5.35754 5.40013 5.47127 5.49449 5.63409 5.65858 5.70789 5.75661 5.80751 5.85564 5.91021 5.91427 5.99460 6.01533 6.07960 6.11480 6.13761 6.21967 6.27223 6.36563 6.42032 6.46640 6.52625 6.69195 6.74333 6.87911 6.94978 7.19918 7.35803 7.61084 7.74288 7.77658 8.05080 8.12903 8.17421 8.48356 9.02066 9.61385 11.09601 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.004601 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.559746 B = 6084.532597 C = 7787.295449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 C 0.143 3.857 4 N -0.485 5.485 5 C 0.133 3.867 6 C -0.044 4.044 7 C -0.138 4.138 8 C -0.148 4.148 9 C -0.175 4.175 10 C -0.055 4.055 11 C -0.163 4.163 12 C 0.092 3.908 13 N -0.524 5.524 14 C 0.056 3.944 15 C -0.119 4.119 16 C -0.106 4.106 17 C 0.054 3.946 18 H 0.038 0.962 19 C -0.513 4.513 20 H 0.052 0.948 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.887 3.113 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.284 1.284 27 C 0.068 3.932 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.030 0.970 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.062 0.938 48 H 0.029 0.971 49 H 0.080 0.920 50 H 0.259 0.741 51 H 0.057 0.943 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.662 4.291 8.897 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C 0.004 3.996 4 N -0.193 5.193 5 C -0.006 4.006 6 C -0.063 4.063 7 C -0.196 4.196 8 C -0.206 4.206 9 C -0.195 4.195 10 C -0.081 4.081 11 C -0.167 4.167 12 C -0.037 4.037 13 N -0.247 5.247 14 C -0.072 4.072 15 C -0.157 4.157 16 C -0.144 4.144 17 C 0.035 3.965 18 H 0.056 0.944 19 C -0.551 4.551 20 H 0.070 0.930 21 C -0.137 4.137 22 N -0.526 5.526 23 Si 0.715 3.285 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.059 4.059 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.047 0.953 49 H 0.099 0.901 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -15.759 3.589 9.072 18.535 hybrid contribution 1.277 1.394 0.226 1.903 sum -14.483 4.983 9.298 17.917 Atomic orbital electron populations 1.21677 0.94465 1.01779 1.01950 1.20954 0.96415 0.91345 1.04492 1.20984 0.94748 0.96066 0.87770 1.67230 1.14684 1.08238 1.29179 1.21059 0.94443 0.90102 0.94947 1.19992 0.96020 0.96801 0.93534 1.21781 0.96675 0.99551 1.01614 1.21927 0.97380 0.99244 1.02017 1.21896 1.03035 1.01559 0.93013 1.21534 0.94469 0.93698 0.98407 1.21498 1.01256 0.95733 0.98221 1.21284 0.93944 0.96799 0.91651 1.62456 1.01626 1.07363 1.53212 1.22307 0.98252 0.92013 0.94640 1.21696 0.95424 0.97650 1.00888 1.21600 0.96588 0.97670 0.98560 1.18684 0.89329 0.92189 0.96274 0.94360 1.21140 0.92762 1.02664 1.38575 0.92992 1.24921 0.98658 0.95118 0.95027 1.69935 1.22347 1.20282 1.40072 0.86620 0.82865 0.81195 0.77815 1.19896 1.21094 1.21013 1.22355 0.90922 0.94501 0.98121 0.92540 0.92770 0.92168 0.88575 0.90336 0.89561 0.92114 0.92616 0.92498 0.92040 0.92128 0.92153 0.85047 0.84869 0.90256 0.90144 0.95166 0.91994 0.93480 0.91932 0.95258 0.90149 0.93131 0.92441 0.95905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 37.15 0.37 -1.13 16 2 C -0.09 -1.21 4.67 -27.89 -0.13 -1.34 16 3 C 0.14 2.15 5.45 -82.59 -0.45 1.70 16 4 N -0.48 -7.58 10.19 -5.74 -0.06 -7.63 16 5 C 0.13 1.89 5.79 -82.59 -0.48 1.41 16 6 C -0.04 -0.50 3.23 -91.77 -0.30 -0.80 16 7 C -0.14 -1.31 9.18 37.16 0.34 -0.96 16 8 C -0.15 -1.50 8.62 37.16 0.32 -1.18 16 9 C -0.18 -2.43 9.18 -39.44 -0.36 -2.80 16 10 C -0.05 -0.81 8.10 -39.28 -0.32 -1.13 16 11 C -0.16 -2.47 3.94 -104.48 -0.41 -2.88 16 12 C 0.09 1.35 5.45 -4.98 -0.03 1.32 16 13 N -0.52 -9.39 4.86 -236.12 -1.15 -10.54 16 14 C 0.06 0.95 3.84 -3.83 -0.01 0.94 16 15 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 16 C -0.11 -2.51 5.09 -26.61 -0.14 -2.65 16 17 C 0.05 1.35 2.15 -91.69 -0.20 1.15 16 18 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.51 -14.07 8.49 -34.44 -0.29 -14.36 16 20 H 0.05 1.42 7.75 -52.48 -0.41 1.02 16 21 C 0.06 1.78 5.34 -17.82 -0.10 1.69 16 22 N -0.89 -25.47 11.81 55.43 0.65 -24.82 16 23 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 C 0.07 1.42 3.41 -3.84 -0.01 1.41 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.22 2.81 -51.93 -0.15 1.08 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.57 6.49 -51.93 -0.34 0.23 16 40 H 0.13 1.54 6.32 -52.49 -0.33 1.21 16 41 H 0.13 1.83 7.70 -52.49 -0.40 1.43 16 42 H 0.08 1.02 6.26 -51.93 -0.32 0.69 16 43 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 44 H 0.03 0.54 6.12 -51.93 -0.32 0.23 16 45 H 0.06 0.91 6.63 -51.93 -0.34 0.56 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.08 2.12 6.65 -51.93 -0.35 1.78 16 50 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 51 H 0.06 1.19 7.73 -51.93 -0.40 0.79 16 52 H 0.02 0.51 6.48 -51.93 -0.34 0.17 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -29.52 386.92 -11.26 -40.79 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -9.17 Total: 2.11 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -2.35 Total: -22.07 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.55 Total: -43.00 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.52 -11.26 -40.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595622479.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.665 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds