Wall clock time and date at job start Tue Mar 31 2020 10:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50694 * 109.47539 * 2 1 4 4 N 1.31888 * 119.62146 * 82.89311 * 3 2 1 5 5 C 1.31858 * 121.72695 * 180.02562 * 4 3 2 6 6 C 1.50693 * 119.61523 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46839 * 264.99838 * 6 5 4 8 8 C 1.53002 * 109.47314 * 145.00034 * 6 5 4 9 9 C 1.38229 * 120.76215 * 0.27079 * 5 4 3 10 10 C 1.38624 * 119.16188 * 359.43667 * 9 5 4 11 11 C 1.38190 * 119.61453 * 262.87034 * 3 2 1 12 12 C 1.50695 * 120.41694 * 0.02562 * 11 3 2 13 13 N 1.46895 * 109.47272 * 268.69107 * 12 11 3 14 14 C 1.46843 * 110.99974 * 76.22709 * 13 12 11 15 15 C 1.53044 * 109.52472 * 174.16033 * 14 13 12 16 16 C 1.53117 * 109.27588 * 59.18141 * 15 14 13 17 17 C 1.53126 * 109.15936 * 302.34468 * 16 15 14 18 18 H 1.08997 * 109.49889 * 297.71291 * 17 16 15 19 19 C 1.50705 * 109.50069 * 177.59951 * 17 16 15 20 20 H 1.08004 * 119.99484 * 246.20647 * 19 17 16 21 21 C 1.37877 * 120.00069 * 66.20601 * 19 17 16 22 22 N 1.31508 * 120.00141 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 119.99851 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47183 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47480 * 119.99542 * 23 21 19 26 26 H 1.48503 * 109.46827 * 239.99937 * 23 21 19 27 27 C 1.46847 * 111.00070 * 312.01674 * 13 12 11 28 28 H 1.09010 * 109.47170 * 304.80062 * 1 2 3 29 29 H 1.09003 * 109.47302 * 64.79273 * 1 2 3 30 30 H 1.09001 * 109.47547 * 184.80008 * 1 2 3 31 31 H 1.08998 * 109.47439 * 239.99488 * 2 1 3 32 32 H 1.09000 * 109.46957 * 119.99826 * 2 1 3 33 33 H 1.09000 * 109.47735 * 24.99724 * 6 5 4 34 34 H 1.08999 * 109.47095 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47159 * 299.99958 * 7 6 5 36 36 H 1.08996 * 109.47563 * 59.99930 * 7 6 5 37 37 H 1.08999 * 109.47278 * 179.97438 * 8 6 5 38 38 H 1.09007 * 109.46526 * 299.99563 * 8 6 5 39 39 H 1.09000 * 109.46972 * 59.99224 * 8 6 5 40 40 H 1.07998 * 120.41688 * 179.70692 * 9 5 4 41 41 H 1.07994 * 120.79138 * 180.29890 * 10 9 5 42 42 H 1.08999 * 109.47456 * 28.69434 * 12 11 3 43 43 H 1.09006 * 109.46906 * 148.69411 * 12 11 3 44 44 H 1.09000 * 109.46058 * 294.17692 * 14 13 12 45 45 H 1.09002 * 109.46324 * 54.14223 * 14 13 12 46 46 H 1.09001 * 109.50189 * 179.12124 * 15 14 13 47 47 H 1.08996 * 109.49932 * 299.24073 * 15 14 13 48 48 H 1.08999 * 109.52634 * 62.24880 * 16 15 14 49 49 H 1.08999 * 109.52214 * 182.37899 * 16 15 14 50 50 H 0.97002 * 120.00039 * 180.02562 * 22 21 19 51 51 H 1.08994 * 109.46535 * 305.85541 * 27 13 12 52 52 H 1.09000 * 109.46385 * 65.82576 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.1159 2.0826 1.1377 5 6 2.5491 3.3270 1.1857 6 6 2.6259 4.0382 2.5121 7 6 1.3510 4.8566 2.7264 8 6 3.8384 4.9713 2.5211 9 6 2.9289 3.9884 0.0329 10 6 2.8608 3.3230 -1.1813 11 6 2.4006 2.0148 -1.1921 12 6 2.3018 1.2513 -2.4875 13 7 3.5758 0.5698 -2.7526 14 6 3.7209 -0.6221 -1.9073 15 6 4.9851 -1.3846 -2.3108 16 6 6.2014 -0.4689 -2.1474 17 6 6.0032 0.7871 -3.0005 18 1 5.9379 0.5064 -4.0517 19 6 7.1690 1.7208 -2.7997 20 1 7.0188 2.6765 -2.3197 21 6 8.4271 1.3548 -3.2289 22 7 8.6100 0.1908 -3.8129 23 14 9.8722 2.5119 -2.9794 24 1 9.4052 3.7485 -2.3027 25 1 10.9004 1.8460 -2.1400 26 1 10.4598 2.8613 -4.2977 27 6 4.7095 1.4865 -2.5770 28 1 -0.3634 0.5866 0.8439 29 1 -0.3634 0.4377 -0.9298 30 1 -0.3634 -1.0240 0.0860 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.7257 3.3050 3.3124 34 1 1.4066 5.3714 3.6856 35 1 1.2511 5.5899 1.9262 36 1 0.4871 4.1920 2.7200 37 1 3.8937 5.4860 3.4803 38 1 4.7467 4.3882 2.3684 39 1 3.7386 5.7045 1.7208 40 1 3.2784 5.0093 0.0781 41 1 3.1555 3.8128 -2.0975 42 1 1.5033 0.5131 -2.4143 43 1 2.0836 1.9431 -3.3012 44 1 3.7970 -0.3195 -0.8629 45 1 2.8514 -1.2667 -2.0360 46 1 5.1008 -2.2607 -1.6728 47 1 4.9036 -1.6993 -3.3511 48 1 6.3057 -0.1852 -1.1001 49 1 7.0991 -0.9941 -2.4737 50 1 9.4952 -0.0668 -4.1145 51 1 4.5581 2.3734 -3.1922 52 1 4.7811 1.7791 -1.5295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595622479.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:51 Heat of formation + Delta-G solvation = -2.855219 kcal Electronic energy + Delta-G solvation = -28088.929257 eV Core-core repulsion = 24665.437482 eV Total energy + Delta-G solvation = -3423.491775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92611 -39.77588 -37.20756 -35.59714 -34.76469 -34.03171 -32.44880 -31.68532 -30.34264 -28.08372 -27.46175 -27.03621 -25.33175 -24.61858 -23.13277 -22.87123 -22.67066 -20.92810 -20.05322 -18.47818 -17.83893 -17.30609 -16.83071 -16.39163 -16.11432 -15.75163 -15.60672 -15.14367 -15.06366 -14.98287 -14.61380 -14.47502 -14.20587 -14.16151 -14.04557 -13.73908 -13.53748 -13.22454 -13.06499 -12.87890 -12.82365 -12.80522 -12.70403 -12.51156 -12.36358 -12.08635 -12.04220 -11.84924 -11.81273 -11.75867 -11.54843 -11.37533 -10.84631 -10.72501 -10.59425 -10.42519 -10.35773 -9.64227 -9.14184 -8.11498 -6.23144 0.12892 0.34601 1.37214 1.39065 1.49856 2.40794 2.73074 3.13343 3.17939 3.21379 3.65761 3.77287 3.90951 3.94844 4.07676 4.16179 4.19715 4.25203 4.28926 4.36668 4.39436 4.43414 4.49302 4.50860 4.60798 4.72158 4.76341 4.77689 4.84933 4.87630 4.88084 4.91744 4.95647 4.97932 5.02757 5.04943 5.09338 5.12354 5.15729 5.26738 5.29389 5.32656 5.34462 5.38974 5.44749 5.48739 5.61016 5.81116 5.93067 6.06665 6.14456 6.30136 6.44429 6.89870 7.07582 7.44419 8.95770 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.004601 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.559746 B = 6084.532597 C = 7787.295449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 C 0.133 3.867 4 N -0.506 5.506 5 C 0.124 3.876 6 C -0.044 4.044 7 C -0.132 4.132 8 C -0.145 4.145 9 C -0.182 4.182 10 C -0.068 4.068 11 C -0.176 4.176 12 C 0.096 3.904 13 N -0.531 5.531 14 C 0.062 3.938 15 C -0.113 4.113 16 C -0.098 4.098 17 C 0.052 3.948 18 H 0.003 0.997 19 C -0.532 4.532 20 H 0.047 0.953 21 C 0.016 3.984 22 N -0.916 5.916 23 Si 0.949 3.051 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.278 1.278 27 C 0.090 3.910 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.024 0.976 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.015 0.985 49 H 0.046 0.954 50 H 0.260 0.740 51 H 0.055 0.945 52 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.123 4.960 9.703 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.005 4.005 4 N -0.215 5.215 5 C -0.014 4.014 6 C -0.063 4.063 7 C -0.189 4.189 8 C -0.202 4.202 9 C -0.202 4.202 10 C -0.094 4.094 11 C -0.180 4.180 12 C -0.032 4.032 13 N -0.253 5.253 14 C -0.066 4.066 15 C -0.151 4.151 16 C -0.137 4.137 17 C 0.033 3.967 18 H 0.021 0.979 19 C -0.571 4.571 20 H 0.065 0.935 21 C -0.183 4.183 22 N -0.555 5.555 23 Si 0.775 3.225 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.204 1.204 27 C -0.037 4.037 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.042 0.958 45 H 0.118 0.882 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.034 0.966 49 H 0.065 0.935 50 H 0.069 0.931 51 H 0.074 0.926 52 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -17.239 4.263 9.881 20.322 hybrid contribution 1.726 1.191 -0.002 2.098 sum -15.513 5.454 9.879 19.183 Atomic orbital electron populations 1.21637 0.92694 1.02979 1.01867 1.20983 0.97872 0.89925 1.04228 1.21375 0.94468 0.97033 0.87660 1.67298 1.15597 1.09029 1.29615 1.21583 0.93551 0.89949 0.96302 1.20077 0.97563 0.96922 0.91784 1.21734 0.95071 0.99185 1.02940 1.21911 0.95823 0.98933 1.03544 1.22139 1.02874 1.02494 0.92682 1.21758 0.94539 0.94061 0.99060 1.21540 1.02073 0.96031 0.98358 1.21349 0.92533 0.97457 0.91865 1.62375 1.01889 1.07281 1.53756 1.22313 0.98363 0.91944 0.93950 1.21626 0.94543 0.97775 1.01165 1.21403 0.97445 0.97795 0.97025 1.18606 0.90949 0.92767 0.94382 0.97890 1.21483 0.94103 1.02932 1.38550 0.93520 1.25674 1.01220 0.96570 0.94797 1.70061 1.22922 1.21745 1.40782 0.85643 0.79577 0.79374 0.77911 1.19266 1.20745 1.20355 1.21907 0.90476 0.94468 0.96868 0.93496 0.92133 0.90146 0.88335 0.90898 0.90358 0.90036 0.92154 0.93436 0.89930 0.94021 0.91376 0.83198 0.84422 0.87818 0.89225 0.95800 0.88249 0.91228 0.92510 0.96619 0.93530 0.93076 0.92628 0.97239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.09 -2.20 4.67 29.84 0.14 -2.06 16 3 C 0.13 3.86 5.45 42.54 0.23 4.09 16 4 N -0.51 -15.54 10.19 -172.08 -1.75 -17.29 16 5 C 0.12 3.45 5.79 42.55 0.25 3.70 16 6 C -0.04 -0.95 3.23 -11.54 -0.04 -0.99 16 7 C -0.13 -2.24 9.18 71.98 0.66 -1.58 16 8 C -0.14 -2.71 8.62 71.98 0.62 -2.09 16 9 C -0.18 -4.92 9.18 22.36 0.21 -4.72 16 10 C -0.07 -1.96 8.10 22.47 0.18 -1.78 16 11 C -0.18 -5.13 3.94 -19.77 -0.08 -5.21 16 12 C 0.10 2.62 5.45 85.56 0.47 3.09 16 13 N -0.53 -18.42 4.86 -900.96 -4.38 -22.80 16 14 C 0.06 2.01 3.84 86.33 0.33 2.34 16 15 C -0.11 -4.33 6.09 30.65 0.19 -4.14 16 16 C -0.10 -4.80 5.09 30.68 0.16 -4.64 16 17 C 0.05 2.67 2.15 -11.48 -0.02 2.64 16 18 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 19 C -0.53 -29.98 8.49 25.60 0.22 -29.77 16 20 H 0.05 2.61 7.75 -2.91 -0.02 2.59 16 21 C 0.02 0.92 5.34 84.66 0.45 1.37 16 22 N -0.92 -53.99 11.81 21.45 0.25 -53.74 16 23 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 27 C 0.09 3.83 3.41 86.32 0.29 4.12 16 28 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.10 2.23 2.81 -2.39 -0.01 2.23 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.07 1.16 6.49 -2.39 -0.02 1.14 16 40 H 0.15 3.33 6.32 -2.91 -0.02 3.31 16 41 H 0.14 3.73 7.70 -2.91 -0.02 3.71 16 42 H 0.10 2.33 6.26 -2.39 -0.01 2.32 16 43 H 0.09 2.29 8.10 -2.38 -0.02 2.27 16 44 H 0.02 0.83 6.12 -2.39 -0.01 0.81 16 45 H 0.10 2.55 6.63 -2.39 -0.02 2.54 16 46 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.05 2.55 6.65 -2.39 -0.02 2.54 16 50 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 51 H 0.06 2.33 7.73 -2.39 -0.02 2.31 16 52 H 0.01 0.42 6.48 -2.39 -0.02 0.41 16 Total: -1.00 -65.49 386.92 1.99 -63.50 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.88 Total: 21.39 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 4.96 Total: -37.44 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -5.88 Total: -93.83 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.49 1.99 -63.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595622479.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.646 kcal (2) G-P(sol) polarization free energy of solvation -65.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds