Wall clock time and date at job start Tue Mar 31 2020 11:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47192 * 2 1 4 4 C 1.53000 * 109.46835 * 239.99409 * 2 1 3 5 5 C 1.50696 * 109.47421 * 65.49343 * 4 2 1 6 6 H 1.08009 * 119.99819 * 5.24188 * 5 4 2 7 7 C 1.37866 * 120.00395 * 185.24389 * 5 4 2 8 8 N 1.31519 * 120.00091 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00344 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47042 * 59.99771 * 9 7 5 11 11 H 1.48490 * 109.47491 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47087 * 300.00093 * 9 7 5 13 13 N 1.46900 * 109.47063 * 119.99798 * 2 1 3 14 14 C 1.47844 * 111.00320 * 176.12025 * 13 2 1 15 15 C 1.54907 * 104.79981 * 146.35926 * 14 13 2 16 16 C 1.55394 * 101.74238 * 323.02250 * 15 14 13 17 17 H 1.09004 * 110.68126 * 277.17436 * 16 15 14 18 18 N 1.46897 * 110.84943 * 153.85880 * 16 15 14 19 19 C 1.46901 * 111.00384 * 190.41514 * 18 16 15 20 20 C 1.46902 * 110.99775 * 66.46474 * 18 16 15 21 21 C 1.53003 * 109.47230 * 190.00266 * 20 18 16 22 22 C 1.50697 * 109.46985 * 179.97438 * 21 20 18 23 23 C 1.38230 * 120.00275 * 269.72247 * 22 21 20 24 24 C 1.38242 * 120.00116 * 179.74590 * 23 22 21 25 25 C 1.38234 * 119.99528 * 0.55553 * 24 23 22 26 26 C 1.38232 * 120.00266 * 359.69993 * 25 24 23 27 27 C 1.38235 * 119.99730 * 90.00374 * 22 21 20 28 28 C 1.47442 * 110.99930 * 296.96205 * 13 2 1 29 29 H 1.08998 * 109.47207 * 300.00037 * 1 2 3 30 30 H 1.08996 * 109.47182 * 60.00417 * 1 2 3 31 31 H 1.09004 * 109.47127 * 180.02562 * 1 2 3 32 32 H 1.09011 * 109.46646 * 185.49002 * 4 2 1 33 33 H 1.08993 * 109.47362 * 305.48796 * 4 2 1 34 34 H 0.97001 * 120.00067 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.37517 * 265.19325 * 14 13 2 36 36 H 1.09007 * 110.36938 * 27.53355 * 14 13 2 37 37 H 1.08997 * 110.98711 * 81.02439 * 15 14 13 38 38 H 1.09002 * 110.99064 * 204.80647 * 15 14 13 39 39 H 1.09002 * 109.46693 * 60.00389 * 19 18 16 40 40 H 1.09000 * 109.47261 * 179.97438 * 19 18 16 41 41 H 1.08991 * 109.47239 * 300.00368 * 19 18 16 42 42 H 1.08998 * 109.47236 * 310.00256 * 20 18 16 43 43 H 1.08997 * 109.47614 * 70.00176 * 20 18 16 44 44 H 1.08998 * 109.47003 * 300.00133 * 21 20 18 45 45 H 1.09004 * 109.46989 * 59.99834 * 21 20 18 46 46 H 1.07999 * 119.99934 * 0.02562 * 23 22 21 47 47 H 1.07996 * 119.99959 * 180.27887 * 24 23 22 48 48 H 1.08000 * 119.99897 * 179.72150 * 25 24 23 49 49 H 1.08004 * 119.99836 * 179.97438 * 26 25 24 50 50 H 1.08006 * 120.00320 * 359.97438 * 27 22 21 51 51 H 1.09007 * 109.89063 * 356.15108 * 28 13 2 52 52 H 1.08999 * 109.89208 * 117.17349 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6517 0.0630 -2.4760 6 1 1.1718 1.0250 -2.3723 7 6 1.9091 -0.4473 -3.7306 8 7 2.4939 -1.6185 -3.8568 9 14 1.4273 0.5247 -5.2513 10 1 2.1293 1.8333 -5.2453 11 1 1.8105 -0.2364 -6.4673 12 1 -0.0405 0.7504 -5.2500 13 7 2.0197 -0.6925 1.1995 14 6 3.4946 -0.7936 1.1879 15 6 3.9099 -0.6913 2.6768 16 6 2.8884 0.3464 3.2194 17 1 3.2225 1.3623 3.0081 18 7 2.6683 0.1596 4.6597 19 6 1.5321 0.9647 5.1276 20 6 3.8842 0.4716 5.4229 21 6 3.7007 0.0318 6.8768 22 6 4.9482 0.3513 7.6594 23 6 5.9633 -0.5822 7.7534 24 6 7.1100 -0.2871 8.4670 25 6 7.2365 0.9372 9.0961 26 6 6.2192 1.8688 9.0066 27 6 5.0750 1.5758 8.2883 28 6 1.6074 0.0170 2.4244 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1256 -0.8073 -1.2013 33 1 1.5986 -1.7167 -1.2996 34 1 2.6747 -1.9777 -4.7396 35 1 3.8060 -1.7519 0.7721 36 1 3.9268 0.0276 0.6161 37 1 3.7941 -1.6505 3.1812 38 1 4.9312 -0.3226 2.7728 39 1 0.6301 0.6643 4.5944 40 1 1.3911 0.8072 6.1969 41 1 1.7318 2.0193 4.9385 42 1 4.7321 -0.0573 4.9876 43 1 4.0693 1.5451 5.3886 44 1 2.8528 0.5607 7.3121 45 1 3.5157 -1.0419 6.9111 46 1 5.8625 -1.5405 7.2655 47 1 7.9049 -1.0148 8.5366 48 1 8.1304 1.1661 9.6574 49 1 6.3179 2.8252 9.4985 50 1 4.2801 2.3037 8.2183 51 1 1.0866 0.9380 2.1621 52 1 0.9548 -0.6208 3.0206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595747445.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:27 Heat of formation + Delta-G solvation = 24.303709 kcal Electronic energy + Delta-G solvation = -26177.240574 eV Core-core repulsion = 22754.926498 eV Total energy + Delta-G solvation = -3422.314076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.77537 -39.20615 -36.97281 -34.11728 -33.01151 -31.89251 -31.16903 -29.38520 -28.73613 -27.84068 -26.45321 -25.75805 -23.43923 -22.85271 -22.41010 -21.25269 -20.84873 -19.92751 -18.91673 -17.14642 -16.63526 -16.29318 -15.70979 -15.56512 -15.23077 -14.82335 -14.55680 -14.34056 -13.91338 -13.72697 -13.56232 -13.35167 -13.17522 -12.98276 -12.76800 -12.68717 -12.18210 -12.07714 -11.97037 -11.84895 -11.45511 -11.40352 -11.30581 -11.09860 -10.94930 -10.84153 -10.75931 -10.62164 -10.58531 -10.50385 -10.32507 -9.86814 -9.20732 -9.17739 -9.09284 -8.97268 -8.43492 -8.31871 -7.62526 -5.97165 -3.98916 1.06402 1.11523 3.33916 3.38632 3.40596 3.46227 3.77422 4.43274 4.53189 4.56148 4.63592 4.69685 4.75744 4.84502 4.88174 5.00334 5.11676 5.22288 5.24297 5.27226 5.32387 5.38348 5.40718 5.41709 5.57999 5.66534 5.72023 5.74168 5.82391 5.84694 5.91208 5.96959 6.01564 6.02245 6.16566 6.18058 6.23031 6.23241 6.37464 6.37490 6.41626 6.51075 6.72373 6.72993 6.94632 6.97360 7.06681 7.15511 7.60326 7.62231 7.80751 7.90020 8.11699 8.46829 9.07346 9.63917 11.14092 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.002110 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.997374 B =13264.470581 C =13733.072819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.080 3.920 3 H 0.025 0.975 4 C 0.032 3.968 5 C -0.517 4.517 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.522 5.522 14 C 0.051 3.949 15 C -0.119 4.119 16 C 0.061 3.939 17 H 0.044 0.956 18 N -0.529 5.529 19 C 0.018 3.982 20 C 0.061 3.939 21 C -0.078 4.078 22 C -0.078 4.078 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.120 4.120 27 C -0.118 4.118 28 C 0.053 3.947 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.014 0.986 33 H 0.028 0.972 34 H 0.260 0.740 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.022 0.978 42 H 0.078 0.922 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.048 0.952 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.635 4.990 26.393 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.027 4.027 3 H 0.043 0.957 4 C -0.006 4.006 5 C -0.556 4.556 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.247 5.247 14 C -0.077 4.077 15 C -0.158 4.158 16 C -0.048 4.048 17 H 0.062 0.938 18 N -0.253 5.253 19 C -0.130 4.130 20 C -0.067 4.067 21 C -0.116 4.116 22 C -0.079 4.079 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.076 4.076 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.096 0.904 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.066 0.934 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.342 3.875 26.302 27.118 hybrid contribution 0.378 2.296 -1.051 2.553 sum 5.720 6.171 25.251 26.616 Atomic orbital electron populations 1.21731 0.95322 1.01621 0.99883 1.22031 0.95115 0.94979 0.90618 0.95737 1.19155 0.96039 0.96228 0.89136 1.21148 1.39235 1.04293 0.90923 0.92865 1.24987 0.95362 0.94993 0.98995 1.69961 1.42407 1.17503 1.23341 0.86690 0.78953 0.80008 0.82521 1.20388 1.21321 1.20260 1.63726 1.09766 1.49521 1.01689 1.22912 0.88374 1.01997 0.94443 1.22824 0.97154 0.99505 0.96289 1.22984 0.97485 0.97437 0.86863 0.93848 1.62062 1.04764 1.55523 1.02924 1.22470 0.94620 0.94849 1.01045 1.22075 0.93088 0.98617 0.92872 1.20629 0.94345 1.02911 0.93683 1.19914 0.96170 0.94116 0.97666 1.21127 0.93496 0.99477 0.99180 1.21175 0.97790 0.97015 0.97685 1.21148 0.98979 0.94207 1.00210 1.21142 0.93987 0.99371 0.99300 1.21072 0.98083 0.96493 0.97984 1.22859 0.95650 0.97335 0.91746 0.95187 0.91648 0.92646 0.96777 0.95361 0.92993 0.90014 0.93518 0.89893 0.91779 0.90834 0.91326 0.95912 0.90394 0.95038 0.90957 0.89934 0.85851 0.86094 0.86282 0.86235 0.86295 0.93373 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.93 37.16 0.33 -2.19 16 2 C 0.08 1.70 1.64 -67.71 -0.11 1.59 16 3 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.03 0.83 4.37 -27.89 -0.12 0.70 16 5 C -0.52 -14.51 8.31 -34.45 -0.29 -14.80 16 6 H 0.05 1.45 7.29 -52.48 -0.38 1.07 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 N -0.52 -9.75 5.03 -223.29 -1.12 -10.87 16 14 C 0.05 0.88 5.27 -2.30 -0.01 0.87 16 15 C -0.12 -1.65 5.67 -24.45 -0.14 -1.79 16 16 C 0.06 0.82 2.65 -65.75 -0.17 0.65 16 17 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 18 N -0.53 -6.02 4.60 -232.53 -1.07 -7.09 16 19 C 0.02 0.18 9.05 60.07 0.54 0.73 16 20 C 0.06 0.61 4.84 -3.82 -0.02 0.60 16 21 C -0.08 -0.67 5.28 -27.88 -0.15 -0.81 16 22 C -0.08 -0.68 5.13 -104.63 -0.54 -1.22 16 23 C -0.11 -0.98 9.70 -39.58 -0.38 -1.36 16 24 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 25 C -0.13 -0.97 10.05 -39.59 -0.40 -1.37 16 26 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 27 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 28 C 0.05 0.81 4.68 -2.83 -0.01 0.80 16 29 H 0.03 0.50 6.69 -51.93 -0.35 0.15 16 30 H 0.06 1.35 7.10 -51.93 -0.37 0.98 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.01 0.38 6.66 -51.92 -0.35 0.04 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 35 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 36 H 0.05 0.87 7.47 -51.92 -0.39 0.48 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 39 H 0.07 0.75 6.64 -51.93 -0.34 0.41 16 40 H 0.07 0.57 6.30 -51.93 -0.33 0.25 16 41 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.82 6.94 -51.93 -0.36 0.46 16 43 H 0.03 0.33 8.12 -51.93 -0.42 -0.10 16 44 H 0.07 0.57 6.42 -51.93 -0.33 0.24 16 45 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 47 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 50 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 51 H 0.05 0.74 6.55 -51.92 -0.34 0.40 16 52 H 0.08 1.21 7.30 -51.93 -0.38 0.84 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -30.22 399.61 -12.57 -42.79 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -9.38 Total: -1.33 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -2.74 Total: -20.08 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -1.46 Total: -44.08 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.22 -12.57 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595747445.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.096 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds