Wall clock time and date at job start Tue Mar 31 2020 11:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47192 * 2 1 4 4 C 1.53000 * 109.46835 * 239.99409 * 2 1 3 5 5 C 1.50696 * 109.47421 * 65.49343 * 4 2 1 6 6 H 1.08009 * 119.99819 * 5.24188 * 5 4 2 7 7 C 1.37866 * 120.00395 * 185.24389 * 5 4 2 8 8 N 1.31519 * 120.00091 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00344 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47042 * 59.99771 * 9 7 5 11 11 H 1.48490 * 109.47491 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47087 * 300.00093 * 9 7 5 13 13 N 1.46900 * 109.47063 * 119.99798 * 2 1 3 14 14 C 1.47844 * 111.00320 * 176.12025 * 13 2 1 15 15 C 1.54907 * 104.79981 * 146.35926 * 14 13 2 16 16 C 1.55394 * 101.74238 * 323.02250 * 15 14 13 17 17 H 1.09004 * 110.68126 * 277.17436 * 16 15 14 18 18 N 1.46897 * 110.84943 * 153.85880 * 16 15 14 19 19 C 1.46901 * 111.00384 * 190.41514 * 18 16 15 20 20 C 1.46902 * 110.99775 * 66.46474 * 18 16 15 21 21 C 1.53003 * 109.47230 * 190.00266 * 20 18 16 22 22 C 1.50697 * 109.46985 * 179.97438 * 21 20 18 23 23 C 1.38230 * 120.00275 * 269.72247 * 22 21 20 24 24 C 1.38242 * 120.00116 * 179.74590 * 23 22 21 25 25 C 1.38234 * 119.99528 * 0.55553 * 24 23 22 26 26 C 1.38232 * 120.00266 * 359.69993 * 25 24 23 27 27 C 1.38235 * 119.99730 * 90.00374 * 22 21 20 28 28 C 1.47442 * 110.99930 * 296.96205 * 13 2 1 29 29 H 1.08998 * 109.47207 * 300.00037 * 1 2 3 30 30 H 1.08996 * 109.47182 * 60.00417 * 1 2 3 31 31 H 1.09004 * 109.47127 * 180.02562 * 1 2 3 32 32 H 1.09011 * 109.46646 * 185.49002 * 4 2 1 33 33 H 1.08993 * 109.47362 * 305.48796 * 4 2 1 34 34 H 0.97001 * 120.00067 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.37517 * 265.19325 * 14 13 2 36 36 H 1.09007 * 110.36938 * 27.53355 * 14 13 2 37 37 H 1.08997 * 110.98711 * 81.02439 * 15 14 13 38 38 H 1.09002 * 110.99064 * 204.80647 * 15 14 13 39 39 H 1.09002 * 109.46693 * 60.00389 * 19 18 16 40 40 H 1.09000 * 109.47261 * 179.97438 * 19 18 16 41 41 H 1.08991 * 109.47239 * 300.00368 * 19 18 16 42 42 H 1.08998 * 109.47236 * 310.00256 * 20 18 16 43 43 H 1.08997 * 109.47614 * 70.00176 * 20 18 16 44 44 H 1.08998 * 109.47003 * 300.00133 * 21 20 18 45 45 H 1.09004 * 109.46989 * 59.99834 * 21 20 18 46 46 H 1.07999 * 119.99934 * 0.02562 * 23 22 21 47 47 H 1.07996 * 119.99959 * 180.27887 * 24 23 22 48 48 H 1.08000 * 119.99897 * 179.72150 * 25 24 23 49 49 H 1.08004 * 119.99836 * 179.97438 * 26 25 24 50 50 H 1.08006 * 120.00320 * 359.97438 * 27 22 21 51 51 H 1.09007 * 109.89063 * 356.15108 * 28 13 2 52 52 H 1.08999 * 109.89208 * 117.17349 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6517 0.0630 -2.4760 6 1 1.1718 1.0250 -2.3723 7 6 1.9091 -0.4473 -3.7306 8 7 2.4939 -1.6185 -3.8568 9 14 1.4273 0.5247 -5.2513 10 1 2.1293 1.8333 -5.2453 11 1 1.8105 -0.2364 -6.4673 12 1 -0.0405 0.7504 -5.2500 13 7 2.0197 -0.6925 1.1995 14 6 3.4946 -0.7936 1.1879 15 6 3.9099 -0.6913 2.6768 16 6 2.8884 0.3464 3.2194 17 1 3.2225 1.3623 3.0081 18 7 2.6683 0.1596 4.6597 19 6 1.5321 0.9647 5.1276 20 6 3.8842 0.4716 5.4229 21 6 3.7007 0.0318 6.8768 22 6 4.9482 0.3513 7.6594 23 6 5.9633 -0.5822 7.7534 24 6 7.1100 -0.2871 8.4670 25 6 7.2365 0.9372 9.0961 26 6 6.2192 1.8688 9.0066 27 6 5.0750 1.5758 8.2883 28 6 1.6074 0.0170 2.4244 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1256 -0.8073 -1.2013 33 1 1.5986 -1.7167 -1.2996 34 1 2.6747 -1.9777 -4.7396 35 1 3.8060 -1.7519 0.7721 36 1 3.9268 0.0276 0.6161 37 1 3.7941 -1.6505 3.1812 38 1 4.9312 -0.3226 2.7728 39 1 0.6301 0.6643 4.5944 40 1 1.3911 0.8072 6.1969 41 1 1.7318 2.0193 4.9385 42 1 4.7321 -0.0573 4.9876 43 1 4.0693 1.5451 5.3886 44 1 2.8528 0.5607 7.3121 45 1 3.5157 -1.0419 6.9111 46 1 5.8625 -1.5405 7.2655 47 1 7.9049 -1.0148 8.5366 48 1 8.1304 1.1661 9.6574 49 1 6.3179 2.8252 9.4985 50 1 4.2801 2.3037 8.2183 51 1 1.0866 0.9380 2.1621 52 1 0.9548 -0.6208 3.0206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595747445.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:26 Heat of formation + Delta-G solvation = 7.621780 kcal Electronic energy + Delta-G solvation = -26177.963956 eV Core-core repulsion = 22754.926498 eV Total energy + Delta-G solvation = -3423.037458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74725 -40.09226 -38.11645 -35.69483 -34.25172 -33.42621 -31.73536 -30.68611 -29.93121 -29.02103 -28.11978 -26.70027 -25.20781 -23.43481 -23.36271 -22.67100 -21.58743 -21.12273 -20.47830 -18.64813 -17.77866 -17.37172 -16.93337 -16.51254 -16.36829 -15.99918 -15.68453 -15.46687 -15.25007 -14.92662 -14.46920 -14.36468 -14.19185 -14.03418 -13.90740 -13.74924 -13.63719 -13.40575 -13.18846 -13.01248 -12.82107 -12.73298 -12.63737 -12.37731 -12.32660 -12.06673 -11.97188 -11.90609 -11.84550 -11.71628 -11.60875 -11.51399 -11.21106 -11.07342 -10.52847 -9.79161 -9.59259 -9.34406 -9.12282 -8.17640 -6.27699 0.47000 0.53089 1.39705 1.42582 1.50325 2.40722 2.74968 2.96885 3.15404 3.17335 3.53830 3.82228 3.93310 4.00225 4.11551 4.15839 4.20198 4.26725 4.31876 4.33044 4.39243 4.43218 4.50244 4.54805 4.57949 4.64058 4.68929 4.69241 4.69498 4.76562 4.90073 4.96672 4.99723 5.02285 5.05761 5.07468 5.12981 5.20204 5.21910 5.23746 5.31062 5.41282 5.48487 5.60895 5.66163 5.71934 5.76562 5.79521 6.07962 6.09033 6.12421 6.17323 6.26933 6.40169 6.88044 7.40180 8.94206 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.002110 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.997374 B =13264.470581 C =13733.072819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.091 3.909 3 H 0.019 0.981 4 C 0.042 3.958 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.000 4.000 8 N -0.932 5.932 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.266 1.266 13 N -0.535 5.535 14 C 0.048 3.952 15 C -0.105 4.105 16 C 0.071 3.929 17 H 0.041 0.959 18 N -0.532 5.532 19 C 0.017 3.983 20 C 0.066 3.934 21 C -0.068 4.068 22 C -0.090 4.090 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.135 4.135 26 C -0.129 4.129 27 C -0.129 4.129 28 C 0.056 3.944 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.045 0.955 32 H -0.010 1.010 33 H -0.007 1.007 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.024 0.976 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.128 0.872 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.129 0.871 51 H 0.051 0.949 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 6.554 27.961 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.017 4.017 3 H 0.037 0.963 4 C 0.004 3.996 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.572 5.572 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.260 5.260 14 C -0.080 4.080 15 C -0.143 4.143 16 C -0.038 4.038 17 H 0.059 0.941 18 N -0.256 5.256 19 C -0.131 4.131 20 C -0.062 4.062 21 C -0.105 4.105 22 C -0.091 4.091 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.153 4.153 26 C -0.146 4.146 27 C -0.147 4.147 28 C -0.072 4.072 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.008 0.992 33 H 0.011 0.989 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.043 0.957 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.146 0.854 47 H 0.154 0.846 48 H 0.155 0.845 49 H 0.155 0.845 50 H 0.147 0.853 51 H 0.070 0.930 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.008 5.449 27.897 28.862 hybrid contribution 0.529 1.775 -1.470 2.365 sum 5.537 7.225 26.427 27.951 Atomic orbital electron populations 1.21636 0.93879 1.01339 1.00923 1.21736 0.96164 0.93916 0.89867 0.96275 1.18968 0.94315 0.94809 0.91483 1.21532 1.39063 1.04676 0.91893 0.92218 1.25938 0.95215 0.96022 1.02597 1.70109 1.43578 1.19283 1.24208 0.85539 0.79090 0.78578 0.78067 1.19334 1.20988 1.19092 1.63637 1.10458 1.49941 1.01981 1.22868 0.87890 1.00327 0.96891 1.22711 0.98259 1.00043 0.93303 1.22786 0.95927 0.96902 0.88192 0.94146 1.62056 1.05806 1.56140 1.01622 1.22531 0.93745 0.94681 1.02110 1.22057 0.92214 0.98425 0.93503 1.20518 0.94681 1.02726 0.92614 1.19991 0.96331 0.94541 0.98199 1.21313 0.93893 0.99845 0.99636 1.21443 0.98055 0.97647 0.97510 1.21458 0.99681 0.94050 1.00095 1.21436 0.93814 1.00225 0.99168 1.21286 0.98730 0.96616 0.98080 1.22854 0.96711 0.97200 0.90413 0.91875 0.92801 0.93552 0.99156 0.98897 0.92890 0.91880 0.95169 0.89619 0.90077 0.91101 0.89521 0.95706 0.91000 0.95192 0.90140 0.90235 0.85410 0.84637 0.84464 0.84505 0.85288 0.93029 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 8.93 71.98 0.64 -4.04 16 2 C 0.09 3.94 1.64 44.92 0.07 4.01 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C 0.04 2.26 4.37 29.85 0.13 2.39 16 5 C -0.53 -30.49 8.31 25.60 0.21 -30.28 16 6 H 0.06 3.26 7.29 -2.91 -0.02 3.24 16 7 C 0.00 0.00 5.46 84.65 0.46 0.46 16 8 N -0.93 -57.50 13.29 21.44 0.28 -57.21 16 9 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 N -0.54 -20.14 5.03 -860.35 -4.33 -24.47 16 14 C 0.05 1.73 5.27 86.77 0.46 2.19 16 15 C -0.10 -2.82 5.67 32.07 0.18 -2.64 16 16 C 0.07 1.82 2.65 46.19 0.12 1.94 16 17 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 18 N -0.53 -11.07 4.60 -889.58 -4.09 -15.16 16 19 C 0.02 0.30 9.05 127.69 1.16 1.45 16 20 C 0.07 1.20 4.84 86.30 0.42 1.61 16 21 C -0.07 -1.04 5.28 29.85 0.16 -0.88 16 22 C -0.09 -1.45 5.13 -19.87 -0.10 -1.56 16 23 C -0.13 -2.06 9.70 22.27 0.22 -1.85 16 24 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 25 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 26 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 27 C -0.13 -1.95 9.70 22.27 0.22 -1.73 16 28 C 0.06 1.65 4.68 86.65 0.41 2.06 16 29 H 0.06 2.02 6.69 -2.39 -0.02 2.00 16 30 H 0.05 2.20 7.10 -2.39 -0.02 2.18 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H -0.01 -0.57 6.66 -2.38 -0.02 -0.59 16 33 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.06 2.45 8.11 -2.39 -0.02 2.43 16 36 H 0.03 1.16 7.47 -2.38 -0.02 1.15 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.08 1.92 7.90 -2.39 -0.02 1.90 16 39 H 0.07 1.28 6.64 -2.39 -0.02 1.26 16 40 H 0.09 1.20 6.30 -2.39 -0.02 1.19 16 41 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.07 1.40 6.94 -2.39 -0.02 1.38 16 43 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 44 H 0.08 1.09 6.42 -2.39 -0.02 1.07 16 45 H 0.08 1.27 8.08 -2.38 -0.02 1.25 16 46 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 47 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 48 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 49 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 50 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 51 H 0.05 1.50 6.55 -2.38 -0.02 1.48 16 52 H 0.09 2.46 7.30 -2.39 -0.02 2.44 16 Total: -1.00 -65.93 399.61 0.17 -65.76 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.86 Total: 16.02 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 5.42 Total: -31.63 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -8.13 Total: -96.84 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -65.93 0.17 -65.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595747445.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.379 kcal (2) G-P(sol) polarization free energy of solvation -65.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds