Wall clock time and date at job start Tue Mar 31 2020 11:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47467 * 2 1 4 4 C 1.53001 * 109.46854 * 119.99474 * 2 1 3 5 5 C 1.50701 * 109.47505 * 183.64962 * 4 2 1 6 6 H 1.08004 * 119.99510 * 1.76526 * 5 4 2 7 7 C 1.37872 * 120.00414 * 181.75896 * 5 4 2 8 8 N 1.31510 * 120.00121 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99925 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47237 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47197 * 210.00030 * 9 7 5 12 12 H 1.48505 * 109.47156 * 329.99957 * 9 7 5 13 13 N 1.46902 * 109.47464 * 239.99182 * 2 1 3 14 14 C 1.47906 * 110.99628 * 68.07280 * 13 2 1 15 15 C 1.53992 * 107.05543 * 214.15516 * 14 13 2 16 16 C 1.54593 * 105.14023 * 1.23011 * 15 14 13 17 17 H 1.09011 * 110.72114 * 263.59828 * 16 15 14 18 18 N 1.46899 * 110.72846 * 140.31857 * 16 15 14 19 19 C 1.46901 * 111.00322 * 185.40610 * 18 16 15 20 20 C 1.46901 * 111.00378 * 61.44540 * 18 16 15 21 21 C 1.52997 * 109.47315 * 190.00426 * 20 18 16 22 22 C 1.50700 * 109.46956 * 179.97438 * 21 20 18 23 23 C 1.38231 * 120.00210 * 269.72349 * 22 21 20 24 24 C 1.38237 * 120.00023 * 179.74303 * 23 22 21 25 25 C 1.38237 * 119.99589 * 0.56112 * 24 23 22 26 26 C 1.38231 * 120.00026 * 359.69582 * 25 24 23 27 27 C 1.38230 * 119.99714 * 90.00402 * 22 21 20 28 28 C 1.48530 * 110.99744 * 310.67890 * 13 2 1 29 29 H 1.08994 * 109.46895 * 307.77430 * 1 2 3 30 30 H 1.08997 * 109.47548 * 187.76835 * 1 2 3 31 31 H 1.09007 * 109.46282 * 67.76964 * 1 2 3 32 32 H 1.09007 * 109.47026 * 303.65327 * 4 2 1 33 33 H 1.09001 * 109.47430 * 63.64817 * 4 2 1 34 34 H 0.97003 * 119.99884 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.91649 * 333.50612 * 14 13 2 36 36 H 1.08999 * 109.91578 * 94.60840 * 14 13 2 37 37 H 1.09003 * 110.30713 * 120.14339 * 15 14 13 38 38 H 1.08998 * 110.31013 * 242.30856 * 15 14 13 39 39 H 1.09001 * 109.47085 * 59.99608 * 19 18 16 40 40 H 1.08995 * 109.46844 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.46407 * 299.99260 * 19 18 16 42 42 H 1.09000 * 109.47046 * 310.00509 * 20 18 16 43 43 H 1.08996 * 109.46899 * 70.00082 * 20 18 16 44 44 H 1.09000 * 109.47132 * 300.00031 * 21 20 18 45 45 H 1.09006 * 109.46684 * 60.00146 * 21 20 18 46 46 H 1.08001 * 120.00053 * 0.02562 * 23 22 21 47 47 H 1.07999 * 120.00226 * 180.27707 * 24 23 22 48 48 H 1.08004 * 119.99966 * 179.72216 * 25 24 23 49 49 H 1.08003 * 119.99739 * 180.02562 * 26 25 24 50 50 H 1.08009 * 120.00122 * 359.97438 * 27 22 21 51 51 H 1.09005 * 110.66718 * 278.14834 * 28 13 2 52 52 H 1.09001 * 110.67167 * 41.28603 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5442 -0.6434 1.2955 6 1 4.0810 -0.1065 0.5274 7 6 4.2353 -1.2575 2.3184 8 7 5.5480 -1.1892 2.3589 9 14 3.3069 -2.1866 3.6467 10 1 3.1453 -3.6051 3.2378 11 1 4.0682 -2.1222 4.9200 12 1 1.9690 -1.5713 3.8382 13 7 2.0198 -0.6927 -1.1993 14 6 1.7103 0.0807 -2.4215 15 6 1.4258 -0.9380 -3.5407 16 6 1.5621 -2.3239 -2.8694 17 1 2.5571 -2.7369 -3.0360 18 7 0.5271 -3.2435 -3.3605 19 6 0.5699 -4.5201 -2.6350 20 6 0.6556 -3.4561 -4.8083 21 6 -0.5721 -4.2093 -5.3242 22 6 -0.4405 -4.4269 -6.8096 23 6 -0.9395 -3.4877 -7.6926 24 6 -0.8140 -3.6847 -9.0551 25 6 -0.1998 -4.8265 -9.5346 26 6 0.2945 -5.7682 -8.6516 27 6 0.1741 -5.5684 -7.2891 28 6 1.3450 -2.0050 -1.3688 29 1 -0.3633 0.6295 0.8123 30 1 -0.3634 -1.0182 0.1389 31 1 -0.3632 0.3888 -0.9514 32 1 1.6241 -0.2464 2.1381 33 1 1.7310 -1.7660 1.2174 34 1 6.0341 -1.6216 3.0784 35 1 0.8316 0.7036 -2.2542 36 1 2.5620 0.7051 -2.6914 37 1 0.4157 -0.8027 -3.9276 38 1 2.1562 -0.8326 -4.3429 39 1 0.4025 -4.3404 -1.5730 40 1 -0.2068 -5.1819 -3.0181 41 1 1.5457 -4.9851 -2.7754 42 1 0.7287 -2.4923 -5.3120 43 1 1.5526 -4.0411 -5.0114 44 1 -0.6452 -5.1732 -4.8205 45 1 -1.4691 -3.6242 -5.1211 46 1 -1.4234 -2.5978 -7.3180 47 1 -1.1999 -2.9488 -9.7450 48 1 -0.1057 -4.9827 -10.5991 49 1 0.7747 -6.6601 -9.0262 50 1 0.5604 -6.3042 -6.5991 51 1 1.8153 -2.7631 -0.7425 52 1 0.2819 -1.9230 -1.1429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595747450.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:34 Heat of formation + Delta-G solvation = 35.345939 kcal Electronic energy + Delta-G solvation = -26651.488684 eV Core-core repulsion = 23229.653436 eV Total energy + Delta-G solvation = -3421.835249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.76737 -39.25776 -37.04596 -34.03665 -32.92800 -31.89487 -31.14908 -29.17588 -28.73317 -27.76618 -27.44504 -25.66181 -23.09225 -22.83322 -22.63671 -21.06255 -20.91240 -19.81122 -18.72272 -17.09709 -16.53451 -16.31435 -15.80247 -15.51828 -15.39244 -14.79262 -14.54424 -14.30205 -13.91804 -13.72743 -13.55626 -13.32594 -13.12641 -13.04965 -12.98339 -12.55682 -12.30022 -12.02535 -11.98724 -11.83976 -11.77247 -11.43712 -11.32039 -11.23931 -11.09879 -10.89547 -10.77765 -10.72564 -10.48586 -10.33635 -10.02064 -9.72220 -9.49445 -9.18718 -9.02613 -8.94704 -8.40438 -8.33100 -7.54947 -5.88715 -3.82476 1.08691 1.13549 3.36408 3.44187 3.46927 3.48892 3.82722 4.55745 4.56539 4.58269 4.72375 4.78590 4.83277 4.88833 4.93088 5.01337 5.11434 5.24518 5.29102 5.31984 5.40816 5.45988 5.49240 5.51250 5.57978 5.64149 5.72781 5.75282 5.79882 5.80594 5.89932 5.93335 5.98720 5.99959 6.03868 6.05229 6.20329 6.24833 6.27263 6.34146 6.40205 6.41514 6.49486 6.58173 6.74584 6.82466 7.04462 7.08417 7.17538 7.35413 7.67142 7.83527 7.98190 8.74736 9.24122 9.74349 11.25423 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.002517 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.952004 B =11120.284968 C =11558.856063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.087 3.913 3 H 0.075 0.925 4 C -0.003 4.003 5 C -0.489 4.489 6 H 0.078 0.922 7 C 0.061 3.939 8 N -0.909 5.909 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.485 5.485 14 C 0.032 3.968 15 C -0.119 4.119 16 C 0.078 3.922 17 H 0.055 0.945 18 N -0.534 5.534 19 C 0.019 3.981 20 C 0.061 3.939 21 C -0.078 4.078 22 C -0.077 4.077 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.118 4.118 28 C 0.044 3.956 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.017 0.983 33 H 0.010 0.990 34 H 0.259 0.741 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.027 0.973 42 H 0.077 0.923 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.120 0.880 51 H 0.079 0.921 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.802 -6.695 -21.221 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.021 4.021 3 H 0.093 0.907 4 C -0.041 4.041 5 C -0.527 4.527 6 H 0.096 0.904 7 C -0.139 4.139 8 N -0.549 5.549 9 Si 0.701 3.299 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.208 5.208 14 C -0.097 4.097 15 C -0.158 4.158 16 C -0.031 4.031 17 H 0.073 0.927 18 N -0.259 5.259 19 C -0.129 4.129 20 C -0.067 4.067 21 C -0.116 4.116 22 C -0.078 4.078 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.136 4.136 28 C -0.084 4.084 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.138 0.862 51 H 0.098 0.902 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.524 -6.577 -20.930 26.312 hybrid contribution -0.392 -0.883 0.500 1.087 sum -14.916 -7.459 -20.431 26.373 Atomic orbital electron populations 1.22556 0.99535 1.01607 1.00865 1.21806 0.90039 0.98567 0.91697 0.90690 1.19619 0.97962 0.94881 0.91634 1.21054 0.89219 1.32751 1.09672 0.90360 1.25011 0.94663 0.96462 0.97734 1.69914 1.06221 1.45548 1.33220 0.86902 0.80397 0.80671 0.81977 1.20626 1.21646 1.19312 1.64950 1.53247 1.01823 1.00800 1.22868 0.99711 0.96272 0.90801 1.22418 1.01475 0.94008 0.97885 1.22583 0.92627 0.92211 0.95637 0.92671 1.62094 1.48217 1.12392 1.03178 1.22448 1.00079 0.90649 0.99718 1.22066 0.96061 1.00169 0.88416 1.20634 0.99338 1.01343 0.90287 1.19923 0.97687 0.94490 0.95681 1.21104 1.00115 0.99040 0.93116 1.21161 0.99408 0.97634 0.95527 1.21144 0.99171 0.94663 0.99605 1.21149 0.99877 0.99295 0.93420 1.21090 0.99455 0.97489 0.95532 1.23234 0.97990 0.93478 0.93689 0.92628 0.92577 0.93411 0.96527 0.97141 0.93112 0.93999 0.90906 0.90994 0.91809 0.90892 0.91509 0.95483 0.90494 0.94849 0.90895 0.90132 0.85974 0.86159 0.86295 0.86201 0.86201 0.90219 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 8.18 37.16 0.30 -2.75 16 2 C 0.09 1.74 2.24 -67.71 -0.15 1.59 16 3 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 4 C 0.00 -0.08 3.51 -27.88 -0.10 -0.18 16 5 C -0.49 -13.99 9.36 -34.44 -0.32 -14.32 16 6 H 0.08 2.46 7.99 -52.48 -0.42 2.04 16 7 C 0.06 1.79 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.59 13.96 55.43 0.77 -27.81 16 9 Si 0.87 22.07 27.43 -169.99 -4.66 17.41 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.51 6.59 56.52 0.37 -6.14 16 13 N -0.48 -9.27 4.92 -222.50 -1.09 -10.36 16 14 C 0.03 0.50 6.44 -2.75 -0.02 0.48 16 15 C -0.12 -1.60 5.31 -25.38 -0.13 -1.73 16 16 C 0.08 1.13 2.75 -65.85 -0.18 0.95 16 17 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 18 N -0.53 -6.55 4.60 -232.65 -1.07 -7.62 16 19 C 0.02 0.22 9.16 60.07 0.55 0.77 16 20 C 0.06 0.64 4.79 -3.82 -0.02 0.63 16 21 C -0.08 -0.71 5.28 -27.88 -0.15 -0.86 16 22 C -0.08 -0.71 5.13 -104.63 -0.54 -1.24 16 23 C -0.12 -1.00 9.70 -39.58 -0.38 -1.39 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 25 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 26 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 27 C -0.12 -1.04 9.70 -39.59 -0.38 -1.42 16 28 C 0.04 0.76 3.94 -1.90 -0.01 0.75 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.91 6.41 -51.93 -0.33 0.58 16 31 H 0.05 0.71 6.26 -51.93 -0.32 0.38 16 32 H 0.02 0.40 7.32 -51.93 -0.38 0.02 16 33 H 0.01 0.25 6.47 -51.93 -0.34 -0.09 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 35 H 0.04 0.62 6.00 -51.93 -0.31 0.30 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.89 7.78 -51.93 -0.40 0.49 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.90 7.08 -51.93 -0.37 0.53 16 40 H 0.07 0.64 6.30 -51.93 -0.33 0.32 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.82 6.73 -51.93 -0.35 0.47 16 43 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 44 H 0.07 0.63 6.42 -51.93 -0.33 0.30 16 45 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 47 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 48 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 49 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 50 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 51 H 0.08 1.53 7.53 -51.93 -0.39 1.14 16 52 H 0.06 0.94 5.47 -51.93 -0.28 0.65 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -31.44 394.18 -12.15 -43.59 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -9.22 Total: 0.01 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.82 Total: -21.15 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -1.39 Total: -45.80 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.66 Total: 17.41 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.44 -12.15 -43.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595747450.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.933 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds