Wall clock time and date at job start Tue Mar 31 2020 11:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47467 * 2 1 4 4 C 1.53001 * 109.46854 * 119.99474 * 2 1 3 5 5 C 1.50701 * 109.47505 * 183.64962 * 4 2 1 6 6 H 1.08004 * 119.99510 * 1.76526 * 5 4 2 7 7 C 1.37872 * 120.00414 * 181.75896 * 5 4 2 8 8 N 1.31510 * 120.00121 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99925 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47237 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47197 * 210.00030 * 9 7 5 12 12 H 1.48505 * 109.47156 * 329.99957 * 9 7 5 13 13 N 1.46902 * 109.47464 * 239.99182 * 2 1 3 14 14 C 1.47906 * 110.99628 * 68.07280 * 13 2 1 15 15 C 1.53992 * 107.05543 * 214.15516 * 14 13 2 16 16 C 1.54593 * 105.14023 * 1.23011 * 15 14 13 17 17 H 1.09011 * 110.72114 * 263.59828 * 16 15 14 18 18 N 1.46899 * 110.72846 * 140.31857 * 16 15 14 19 19 C 1.46901 * 111.00322 * 185.40610 * 18 16 15 20 20 C 1.46901 * 111.00378 * 61.44540 * 18 16 15 21 21 C 1.52997 * 109.47315 * 190.00426 * 20 18 16 22 22 C 1.50700 * 109.46956 * 179.97438 * 21 20 18 23 23 C 1.38231 * 120.00210 * 269.72349 * 22 21 20 24 24 C 1.38237 * 120.00023 * 179.74303 * 23 22 21 25 25 C 1.38237 * 119.99589 * 0.56112 * 24 23 22 26 26 C 1.38231 * 120.00026 * 359.69582 * 25 24 23 27 27 C 1.38230 * 119.99714 * 90.00402 * 22 21 20 28 28 C 1.48530 * 110.99744 * 310.67890 * 13 2 1 29 29 H 1.08994 * 109.46895 * 307.77430 * 1 2 3 30 30 H 1.08997 * 109.47548 * 187.76835 * 1 2 3 31 31 H 1.09007 * 109.46282 * 67.76964 * 1 2 3 32 32 H 1.09007 * 109.47026 * 303.65327 * 4 2 1 33 33 H 1.09001 * 109.47430 * 63.64817 * 4 2 1 34 34 H 0.97003 * 119.99884 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.91649 * 333.50612 * 14 13 2 36 36 H 1.08999 * 109.91578 * 94.60840 * 14 13 2 37 37 H 1.09003 * 110.30713 * 120.14339 * 15 14 13 38 38 H 1.08998 * 110.31013 * 242.30856 * 15 14 13 39 39 H 1.09001 * 109.47085 * 59.99608 * 19 18 16 40 40 H 1.08995 * 109.46844 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.46407 * 299.99260 * 19 18 16 42 42 H 1.09000 * 109.47046 * 310.00509 * 20 18 16 43 43 H 1.08996 * 109.46899 * 70.00082 * 20 18 16 44 44 H 1.09000 * 109.47132 * 300.00031 * 21 20 18 45 45 H 1.09006 * 109.46684 * 60.00146 * 21 20 18 46 46 H 1.08001 * 120.00053 * 0.02562 * 23 22 21 47 47 H 1.07999 * 120.00226 * 180.27707 * 24 23 22 48 48 H 1.08004 * 119.99966 * 179.72216 * 25 24 23 49 49 H 1.08003 * 119.99739 * 180.02562 * 26 25 24 50 50 H 1.08009 * 120.00122 * 359.97438 * 27 22 21 51 51 H 1.09005 * 110.66718 * 278.14834 * 28 13 2 52 52 H 1.09001 * 110.67167 * 41.28603 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5442 -0.6434 1.2955 6 1 4.0810 -0.1065 0.5274 7 6 4.2353 -1.2575 2.3184 8 7 5.5480 -1.1892 2.3589 9 14 3.3069 -2.1866 3.6467 10 1 3.1453 -3.6051 3.2378 11 1 4.0682 -2.1222 4.9200 12 1 1.9690 -1.5713 3.8382 13 7 2.0198 -0.6927 -1.1993 14 6 1.7103 0.0807 -2.4215 15 6 1.4258 -0.9380 -3.5407 16 6 1.5621 -2.3239 -2.8694 17 1 2.5571 -2.7369 -3.0360 18 7 0.5271 -3.2435 -3.3605 19 6 0.5699 -4.5201 -2.6350 20 6 0.6556 -3.4561 -4.8083 21 6 -0.5721 -4.2093 -5.3242 22 6 -0.4405 -4.4269 -6.8096 23 6 -0.9395 -3.4877 -7.6926 24 6 -0.8140 -3.6847 -9.0551 25 6 -0.1998 -4.8265 -9.5346 26 6 0.2945 -5.7682 -8.6516 27 6 0.1741 -5.5684 -7.2891 28 6 1.3450 -2.0050 -1.3688 29 1 -0.3633 0.6295 0.8123 30 1 -0.3634 -1.0182 0.1389 31 1 -0.3632 0.3888 -0.9514 32 1 1.6241 -0.2464 2.1381 33 1 1.7310 -1.7660 1.2174 34 1 6.0341 -1.6216 3.0784 35 1 0.8316 0.7036 -2.2542 36 1 2.5620 0.7051 -2.6914 37 1 0.4157 -0.8027 -3.9276 38 1 2.1562 -0.8326 -4.3429 39 1 0.4025 -4.3404 -1.5730 40 1 -0.2068 -5.1819 -3.0181 41 1 1.5457 -4.9851 -2.7754 42 1 0.7287 -2.4923 -5.3120 43 1 1.5526 -4.0411 -5.0114 44 1 -0.6452 -5.1732 -4.8205 45 1 -1.4691 -3.6242 -5.1211 46 1 -1.4234 -2.5978 -7.3180 47 1 -1.1999 -2.9488 -9.7450 48 1 -0.1057 -4.9827 -10.5991 49 1 0.7747 -6.6601 -9.0262 50 1 0.5604 -6.3042 -6.5991 51 1 1.8153 -2.7631 -0.7425 52 1 0.2819 -1.9230 -1.1429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595747450.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:33 Heat of formation + Delta-G solvation = 16.756871 kcal Electronic energy + Delta-G solvation = -26652.294767 eV Core-core repulsion = 23229.653436 eV Total energy + Delta-G solvation = -3422.641331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.80858 -40.11186 -38.16776 -35.50180 -34.26930 -33.45465 -31.73488 -30.36682 -30.12615 -29.22200 -28.58223 -26.63043 -24.84430 -23.61791 -23.42017 -22.54735 -21.65062 -20.92285 -20.25189 -18.77310 -17.79372 -17.34513 -16.99810 -16.36202 -16.29034 -16.21062 -15.65243 -15.48780 -15.01109 -14.96287 -14.77193 -14.53281 -14.26807 -14.14303 -13.81703 -13.72569 -13.70997 -13.58369 -13.25280 -12.97007 -12.88172 -12.63009 -12.59390 -12.48952 -12.10480 -12.01486 -11.93740 -11.76569 -11.68364 -11.62728 -11.60078 -11.44337 -11.33154 -11.15539 -10.68087 -9.79048 -9.58638 -9.34616 -8.95835 -8.17984 -6.16851 0.47102 0.53242 1.35638 1.37393 1.48667 2.41193 2.71153 2.95314 3.15536 3.42337 3.64992 3.79042 3.93648 4.00297 4.14923 4.16080 4.20093 4.21166 4.29003 4.33252 4.38038 4.40353 4.52645 4.54969 4.58471 4.62037 4.67587 4.68998 4.74404 4.76653 4.89167 4.94540 4.99313 5.02055 5.04367 5.08340 5.10408 5.11673 5.15857 5.22212 5.24680 5.30308 5.31988 5.54835 5.61025 5.66160 5.74938 5.76604 6.01331 6.08384 6.16919 6.30241 6.35960 6.53677 6.91031 7.43565 8.99662 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.002517 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.952004 B =11120.284968 C =11558.856063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 H 0.061 0.939 4 C 0.000 4.000 5 C -0.489 4.489 6 H 0.033 0.967 7 C -0.005 4.005 8 N -0.959 5.959 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.247 1.247 13 N -0.522 5.522 14 C 0.033 3.967 15 C -0.107 4.107 16 C 0.085 3.915 17 H 0.032 0.968 18 N -0.530 5.530 19 C 0.018 3.982 20 C 0.065 3.935 21 C -0.068 4.068 22 C -0.090 4.090 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.135 4.135 26 C -0.129 4.129 27 C -0.132 4.132 28 C 0.050 3.950 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.021 0.979 33 H 0.013 0.987 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.019 0.981 42 H 0.078 0.922 43 H 0.025 0.975 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.132 0.868 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.135 0.865 50 H 0.125 0.875 51 H 0.049 0.951 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.729 -7.262 -22.280 29.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 H 0.079 0.921 4 C -0.037 4.037 5 C -0.527 4.527 6 H 0.051 0.949 7 C -0.199 4.199 8 N -0.602 5.602 9 Si 0.768 3.232 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.170 1.170 13 N -0.246 5.246 14 C -0.095 4.095 15 C -0.146 4.146 16 C -0.024 4.024 17 H 0.050 0.950 18 N -0.254 5.254 19 C -0.130 4.130 20 C -0.063 4.063 21 C -0.105 4.105 22 C -0.091 4.091 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.153 4.153 26 C -0.147 4.147 27 C -0.150 4.150 28 C -0.078 4.078 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.038 0.962 42 H 0.097 0.903 43 H 0.043 0.957 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.150 0.850 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.153 0.847 50 H 0.143 0.857 51 H 0.068 0.932 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.477 -7.139 -22.010 28.998 hybrid contribution 0.609 -0.677 0.722 1.162 sum -16.868 -7.815 -21.289 28.263 Atomic orbital electron populations 1.22396 0.96155 1.02226 1.02484 1.21603 0.92638 0.97115 0.90527 0.92121 1.19553 0.94570 0.95567 0.94052 1.21287 0.91839 1.31458 1.08147 0.94870 1.25962 0.95523 0.97792 1.00662 1.70087 1.08276 1.47276 1.34525 0.85753 0.79719 0.79333 0.78357 1.19782 1.21387 1.17014 1.64794 1.54794 1.03140 1.01840 1.22888 1.00013 0.96600 0.89997 1.22353 1.02850 0.92226 0.97137 1.22395 0.92235 0.93470 0.94308 0.94976 1.62128 1.46725 1.12388 1.04184 1.22488 1.00495 0.90696 0.99288 1.22074 0.96633 1.00412 0.87156 1.20517 0.98400 1.01209 0.90383 1.19985 0.98425 0.94965 0.95685 1.21314 1.00258 0.99350 0.93529 1.21456 0.99215 0.98148 0.95704 1.21462 0.98638 0.94460 1.00698 1.21423 0.99908 1.00071 0.93326 1.21283 0.99759 0.97763 0.96178 1.23113 0.97894 0.91832 0.94912 0.91546 0.92264 0.91380 0.96116 0.96911 0.93063 0.92456 0.91767 0.89074 0.90862 0.91860 0.89222 0.96247 0.90314 0.95700 0.90558 0.89848 0.85035 0.84379 0.84411 0.84684 0.85691 0.93221 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.24 8.18 71.98 0.59 -4.65 16 2 C 0.09 3.54 2.24 44.92 0.10 3.64 16 3 H 0.06 2.52 8.10 -2.39 -0.02 2.50 16 4 C 0.00 0.01 3.51 29.85 0.10 0.11 16 5 C -0.49 -28.89 9.36 25.60 0.24 -28.65 16 6 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 7 C 0.00 -0.29 5.47 84.65 0.46 0.17 16 8 N -0.96 -62.42 13.96 21.44 0.30 -62.12 16 9 Si 0.94 45.78 27.43 68.60 1.88 47.66 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 12 H -0.25 -11.01 6.59 99.48 0.66 -10.35 16 13 N -0.52 -20.02 4.92 -857.85 -4.22 -24.24 16 14 C 0.03 1.00 6.44 86.44 0.56 1.55 16 15 C -0.11 -2.69 5.31 31.47 0.17 -2.53 16 16 C 0.09 2.42 2.75 46.12 0.13 2.55 16 17 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 18 N -0.53 -12.24 4.60 -889.97 -4.09 -16.33 16 19 C 0.02 0.41 9.16 127.69 1.17 1.57 16 20 C 0.06 1.27 4.79 86.30 0.41 1.69 16 21 C -0.07 -1.09 5.28 29.85 0.16 -0.94 16 22 C -0.09 -1.51 5.13 -19.87 -0.10 -1.61 16 23 C -0.13 -1.97 9.70 22.27 0.22 -1.76 16 24 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 25 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 26 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 27 C -0.13 -2.16 9.70 22.27 0.22 -1.95 16 28 C 0.05 1.71 3.94 86.65 0.34 2.05 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.75 6.41 -2.39 -0.02 1.74 16 31 H 0.07 1.78 6.26 -2.38 -0.01 1.77 16 32 H 0.02 0.97 7.32 -2.38 -0.02 0.95 16 33 H 0.01 0.60 6.47 -2.39 -0.02 0.58 16 34 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.06 1.55 6.00 -2.39 -0.01 1.54 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.09 1.97 7.78 -2.39 -0.02 1.95 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.52 7.08 -2.39 -0.02 1.50 16 40 H 0.09 1.56 6.30 -2.39 -0.02 1.54 16 41 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.08 1.53 6.73 -2.39 -0.02 1.51 16 43 H 0.02 0.54 8.12 -2.39 -0.02 0.52 16 44 H 0.08 1.17 6.42 -2.39 -0.02 1.15 16 45 H 0.08 1.32 8.08 -2.38 -0.02 1.30 16 46 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 47 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 48 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 49 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 50 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 51 H 0.05 1.95 7.53 -2.38 -0.02 1.93 16 52 H 0.07 2.13 5.47 -2.39 -0.01 2.12 16 Total: -1.00 -69.85 394.18 0.11 -69.74 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.81 Total: 18.90 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: 5.43 Total: -33.61 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -8.01 Total: -102.69 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Total: -69.85 0.11 -69.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595747450.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.496 kcal (2) G-P(sol) polarization free energy of solvation -69.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds