Wall clock time and date at job start Tue Mar 31 2020 11:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39669 * 120.00351 * 2 1 4 4 C 1.38912 * 120.07657 * 6.66156 * 3 2 1 5 5 C 1.38099 * 119.93016 * 179.76716 * 4 3 2 6 6 C 1.38294 * 120.07288 * 0.51077 * 5 4 3 7 7 C 1.38280 * 120.14727 * 359.74059 * 6 5 4 8 8 C 1.38104 * 120.07889 * 0.02562 * 7 6 5 9 9 C 1.46507 * 119.99760 * 179.97438 * 2 1 3 10 10 H 1.09000 * 110.27345 * 178.20161 * 9 2 1 11 11 C 1.54594 * 110.30664 * 300.38989 * 9 2 1 12 12 C 1.54941 * 102.91844 * 140.87362 * 11 9 2 13 13 N 1.48539 * 103.22697 * 322.58885 * 12 11 9 14 14 C 1.46901 * 110.99944 * 159.71724 * 13 12 11 15 15 C 1.53006 * 109.46941 * 60.20307 * 14 13 12 16 16 C 1.53003 * 109.46937 * 281.50246 * 15 14 13 17 17 C 1.52990 * 109.47214 * 41.50177 * 15 14 13 18 18 C 1.52999 * 109.46754 * 161.50601 * 15 14 13 19 19 C 1.50702 * 109.47007 * 180.02562 * 18 15 14 20 20 H 1.08007 * 119.99855 * 359.97438 * 19 18 15 21 21 C 1.37874 * 120.00146 * 180.02562 * 19 18 15 22 22 N 1.31508 * 119.99845 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99835 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47149 * 89.99590 * 23 21 19 25 25 H 1.48498 * 109.47076 * 209.99641 * 23 21 19 26 26 H 1.48500 * 109.47472 * 329.99721 * 23 21 19 27 27 C 1.47906 * 105.81734 * 39.20649 * 13 12 11 28 28 H 1.08997 * 109.47230 * 270.00178 * 1 2 3 29 29 H 1.09009 * 109.46809 * 30.00573 * 1 2 3 30 30 H 1.09000 * 109.46945 * 149.99633 * 1 2 3 31 31 H 1.08004 * 120.03230 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.96902 * 180.24846 * 5 4 3 33 33 H 1.07998 * 119.92198 * 179.76381 * 6 5 4 34 34 H 1.08004 * 119.96430 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.04380 * 180.02562 * 8 7 6 36 36 H 1.08992 * 110.73062 * 259.22975 * 11 9 2 37 37 H 1.09000 * 110.72373 * 22.52584 * 11 9 2 38 38 H 1.09000 * 110.67017 * 204.15239 * 12 11 9 39 39 H 1.09007 * 110.66627 * 81.02022 * 12 11 9 40 40 H 1.09004 * 109.47351 * 300.20278 * 14 13 12 41 41 H 1.08996 * 109.47006 * 180.20154 * 14 13 12 42 42 H 1.08997 * 109.47279 * 182.48530 * 16 15 14 43 43 H 1.08994 * 109.47165 * 62.48212 * 16 15 14 44 44 H 1.09006 * 109.46999 * 302.48194 * 16 15 14 45 45 H 1.09000 * 109.47588 * 300.00034 * 17 15 14 46 46 H 1.09005 * 109.47279 * 59.99852 * 17 15 14 47 47 H 1.09002 * 109.47248 * 179.97438 * 17 15 14 48 48 H 1.09002 * 109.46982 * 299.99085 * 18 15 14 49 49 H 1.08999 * 109.47553 * 60.00270 * 18 15 14 50 50 H 0.97007 * 119.99607 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.91744 * 94.02542 * 27 13 12 52 52 H 1.09003 * 109.91328 * 215.31271 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2095 0.0000 4 6 1.4775 2.4095 0.1394 5 6 2.1716 3.6033 0.1439 6 6 3.5469 3.6059 -0.0009 7 6 4.2323 2.4136 -0.1452 8 6 3.5449 1.2158 -0.1456 9 6 2.1974 -1.2688 0.0006 10 1 3.2713 -1.0850 -0.0316 11 6 1.8305 -2.0996 1.2516 12 6 1.7638 -3.5458 0.6997 13 7 1.1642 -3.3681 -0.6477 14 6 1.4511 -4.5236 -1.5082 15 6 0.8638 -5.7877 -0.8772 16 6 1.7813 -6.2694 0.2485 17 6 -0.5219 -5.4770 -0.3080 18 6 0.7448 -6.8807 -1.9412 19 6 0.1657 -8.1256 -1.3199 20 1 -0.0914 -8.1362 -0.2709 21 6 -0.0350 -9.2513 -2.0903 22 7 0.2785 -9.2385 -3.3674 23 14 -0.7521 -10.7946 -1.3199 24 1 -2.2328 -10.7596 -1.4281 25 1 -0.2320 -11.9902 -2.0307 26 1 -0.3618 -10.8608 0.1113 27 6 1.7673 -2.1348 -1.1979 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5139 31 1 0.4030 2.4084 0.2485 32 1 1.6394 4.5363 0.2563 33 1 4.0869 4.5412 -0.0009 34 1 5.3065 2.4190 -0.2576 35 1 4.0808 0.2849 -0.2579 36 1 2.6053 -2.0129 2.0132 37 1 0.8624 -1.7931 1.6478 38 1 1.1244 -4.1677 1.3263 39 1 2.7630 -3.9746 0.6225 40 1 2.5299 -4.6383 -1.6148 41 1 1.0038 -4.3658 -2.4895 42 1 1.3861 -7.1942 0.6687 43 1 1.8311 -5.5086 1.0273 44 1 2.7804 -6.4487 -0.1488 45 1 -0.4371 -4.6983 0.4500 46 1 -1.1756 -5.1338 -1.1099 47 1 -0.9405 -6.3777 0.1411 48 1 0.0911 -6.5375 -2.7431 49 1 1.7321 -7.1021 -2.3467 50 1 0.1370 -10.0304 -3.9095 51 1 2.6366 -2.3857 -1.8057 52 1 1.0330 -1.5985 -1.7990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597225157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:47 Heat of formation + Delta-G solvation = 47.547571 kcal Electronic energy + Delta-G solvation = -27028.475678 eV Core-core repulsion = 23607.169531 eV Total energy + Delta-G solvation = -3421.306146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23450 -39.04066 -36.88287 -34.95000 -32.43455 -31.30348 -30.73850 -29.82099 -28.71218 -26.94073 -26.37232 -26.07250 -25.25266 -22.89675 -22.46337 -21.63986 -20.93442 -19.78329 -18.19966 -17.88569 -16.35973 -16.17847 -15.73633 -15.37393 -15.01045 -14.70610 -14.48816 -14.31247 -14.17840 -13.77779 -13.69136 -13.26002 -12.93257 -12.81018 -12.63266 -12.32336 -12.11959 -12.01950 -11.90237 -11.81920 -11.78604 -11.47882 -11.18574 -11.08273 -10.89839 -10.80473 -10.71317 -10.58837 -10.41652 -10.16011 -10.03440 -9.87539 -9.66982 -9.06958 -8.95128 -8.81726 -8.31688 -8.16539 -7.39795 -5.96235 -3.96210 1.29765 1.47892 2.94348 3.32985 3.39578 3.42037 3.75677 4.17026 4.48083 4.57543 4.64169 4.67538 4.79586 4.94477 5.06943 5.15238 5.22693 5.31289 5.32874 5.39226 5.39943 5.48655 5.54859 5.63069 5.64432 5.66529 5.77536 5.79571 5.88333 5.91218 5.93873 6.04305 6.10478 6.16509 6.24724 6.33391 6.36532 6.47265 6.49844 6.62954 6.73711 6.75858 6.87177 7.05923 7.14008 7.21182 7.23494 7.30972 7.40856 7.43079 7.70276 7.86113 8.03959 8.48327 9.08979 9.66436 11.15413 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.037083 B = 0.002328 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.878498 B =12025.755790 C =12103.484316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.619 5.619 3 C 0.221 3.779 4 C -0.200 4.200 5 C -0.073 4.073 6 C -0.187 4.187 7 C -0.072 4.072 8 C -0.202 4.202 9 C 0.141 3.859 10 H 0.093 0.907 11 C -0.138 4.138 12 C 0.033 3.967 13 N -0.506 5.506 14 C 0.057 3.943 15 C -0.056 4.056 16 C -0.150 4.150 17 C -0.114 4.114 18 C 0.035 3.965 19 C -0.506 4.506 20 H 0.059 0.941 21 C 0.054 3.946 22 N -0.897 5.897 23 Si 0.888 3.112 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.275 1.275 27 C 0.021 3.979 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.038 0.962 45 H 0.043 0.957 46 H 0.041 0.959 47 H 0.052 0.948 48 H 0.015 0.985 49 H 0.012 0.988 50 H 0.259 0.741 51 H 0.047 0.953 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.011 23.350 8.263 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.328 5.328 3 C 0.119 3.881 4 C -0.222 4.222 5 C -0.092 4.092 6 C -0.207 4.207 7 C -0.091 4.091 8 C -0.224 4.224 9 C 0.036 3.964 10 H 0.111 0.889 11 C -0.177 4.177 12 C -0.095 4.095 13 N -0.230 5.230 14 C -0.070 4.070 15 C -0.056 4.056 16 C -0.207 4.207 17 C -0.171 4.171 18 C -0.002 4.002 19 C -0.544 4.544 20 H 0.077 0.923 21 C -0.147 4.147 22 N -0.537 5.537 23 Si 0.716 3.284 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.200 1.200 27 C -0.108 4.108 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.033 0.967 49 H 0.030 0.970 50 H 0.068 0.932 51 H 0.065 0.935 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.330 23.098 8.116 24.862 hybrid contribution 0.534 -1.120 0.051 1.242 sum 4.864 21.978 8.166 23.945 Atomic orbital electron populations 1.21624 0.79344 1.03079 1.01154 1.46562 1.04963 1.02208 1.79115 1.17897 0.91272 0.85866 0.93064 1.20684 0.99765 0.91260 1.10523 1.20875 0.94238 0.97099 0.96974 1.20867 0.94460 0.97770 1.07568 1.20876 0.99308 0.92047 0.96878 1.20735 0.92594 0.98623 1.10463 1.21954 0.96365 0.83026 0.95055 0.88915 1.22988 1.02459 0.95320 0.96964 1.23624 0.98541 0.95432 0.91862 1.64895 1.53369 1.02301 1.02405 1.22511 0.97813 0.90300 0.96418 1.20589 0.94825 0.93345 0.96886 1.22313 0.98741 1.01399 0.98217 1.21607 0.96030 0.99734 0.99734 1.19120 0.96733 0.91719 0.92675 1.21229 1.40874 0.96582 0.95702 0.92334 1.25020 0.96002 0.98771 0.94871 1.69966 1.48763 1.29227 1.05782 0.86664 0.79329 0.83109 0.79307 1.20784 1.21415 1.19979 1.23288 0.98650 0.92352 0.96507 0.93589 0.91823 0.90049 0.86167 0.86468 0.86757 0.86435 0.86176 0.91137 0.90279 0.88480 0.93372 0.95375 0.91080 0.91848 0.93158 0.94281 0.93844 0.93994 0.92946 0.96679 0.97003 0.93181 0.93473 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 8.77 59.84 0.52 1.37 16 2 N -0.62 -6.41 2.92 -170.45 -0.50 -6.91 16 3 C 0.22 2.37 6.53 -83.79 -0.55 1.83 16 4 C -0.20 -1.97 9.15 -39.38 -0.36 -2.34 16 5 C -0.07 -0.66 10.04 -39.61 -0.40 -1.06 16 6 C -0.19 -1.68 10.04 -39.55 -0.40 -2.07 16 7 C -0.07 -0.67 10.04 -39.62 -0.40 -1.07 16 8 C -0.20 -2.08 9.30 -39.38 -0.37 -2.44 16 9 C 0.14 1.48 3.33 -66.58 -0.22 1.26 16 10 H 0.09 0.93 5.40 -51.93 -0.28 0.65 16 11 C -0.14 -1.46 6.66 -24.87 -0.17 -1.62 16 12 C 0.03 0.41 4.05 -1.89 -0.01 0.41 16 13 N -0.51 -7.07 4.24 -230.44 -0.98 -8.04 16 14 C 0.06 0.97 4.19 -3.82 -0.02 0.95 16 15 C -0.06 -1.09 0.52 -154.51 -0.08 -1.17 16 16 C -0.15 -2.73 7.45 37.16 0.28 -2.46 16 17 C -0.11 -2.15 7.72 37.15 0.29 -1.86 16 18 C 0.03 0.88 3.96 -27.88 -0.11 0.77 16 19 C -0.51 -13.76 7.62 -34.44 -0.26 -14.02 16 20 H 0.06 1.55 5.68 -52.48 -0.30 1.25 16 21 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 22 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 23 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.02 0.26 5.84 -2.76 -0.02 0.24 16 28 H 0.05 0.41 7.90 -51.93 -0.41 0.00 16 29 H 0.06 0.53 6.50 -51.92 -0.34 0.19 16 30 H 0.08 0.83 6.69 -51.93 -0.35 0.49 16 31 H 0.12 1.04 6.34 -52.48 -0.33 0.71 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.12 1.14 5.79 -52.49 -0.30 0.84 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.86 7.02 -51.93 -0.36 0.50 16 38 H 0.10 1.29 4.96 -51.93 -0.26 1.04 16 39 H 0.05 0.62 7.12 -51.93 -0.37 0.25 16 40 H 0.03 0.47 7.82 -51.93 -0.41 0.07 16 41 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 42 H 0.06 1.27 6.54 -51.93 -0.34 0.93 16 43 H 0.05 0.77 3.82 -51.93 -0.20 0.57 16 44 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 45 H 0.04 0.72 5.52 -51.93 -0.29 0.43 16 46 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.05 1.07 6.62 -51.93 -0.34 0.72 16 48 H 0.01 0.41 8.13 -51.93 -0.42 -0.02 16 49 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 51 H 0.05 0.58 7.70 -51.93 -0.40 0.18 16 52 H 0.08 1.03 6.84 -51.93 -0.35 0.68 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -29.42 381.37 -10.93 -40.35 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.56 Total: 0.26 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -2.36 Total: -21.87 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: -0.74 Total: -41.05 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.42 -10.93 -40.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597225157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.898 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds