Wall clock time and date at job start Tue Mar 31 2020 11:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39669 * 120.00351 * 2 1 4 4 C 1.38912 * 120.07657 * 6.66156 * 3 2 1 5 5 C 1.38099 * 119.93016 * 179.76716 * 4 3 2 6 6 C 1.38294 * 120.07288 * 0.51077 * 5 4 3 7 7 C 1.38280 * 120.14727 * 359.74059 * 6 5 4 8 8 C 1.38104 * 120.07889 * 0.02562 * 7 6 5 9 9 C 1.46507 * 119.99760 * 179.97438 * 2 1 3 10 10 H 1.09000 * 110.27345 * 178.20161 * 9 2 1 11 11 C 1.54594 * 110.30664 * 300.38989 * 9 2 1 12 12 C 1.54941 * 102.91844 * 140.87362 * 11 9 2 13 13 N 1.48539 * 103.22697 * 322.58885 * 12 11 9 14 14 C 1.46901 * 110.99944 * 159.71724 * 13 12 11 15 15 C 1.53006 * 109.46941 * 60.20307 * 14 13 12 16 16 C 1.53003 * 109.46937 * 281.50246 * 15 14 13 17 17 C 1.52990 * 109.47214 * 41.50177 * 15 14 13 18 18 C 1.52999 * 109.46754 * 161.50601 * 15 14 13 19 19 C 1.50702 * 109.47007 * 180.02562 * 18 15 14 20 20 H 1.08007 * 119.99855 * 359.97438 * 19 18 15 21 21 C 1.37874 * 120.00146 * 180.02562 * 19 18 15 22 22 N 1.31508 * 119.99845 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99835 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47149 * 89.99590 * 23 21 19 25 25 H 1.48498 * 109.47076 * 209.99641 * 23 21 19 26 26 H 1.48500 * 109.47472 * 329.99721 * 23 21 19 27 27 C 1.47906 * 105.81734 * 39.20649 * 13 12 11 28 28 H 1.08997 * 109.47230 * 270.00178 * 1 2 3 29 29 H 1.09009 * 109.46809 * 30.00573 * 1 2 3 30 30 H 1.09000 * 109.46945 * 149.99633 * 1 2 3 31 31 H 1.08004 * 120.03230 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.96902 * 180.24846 * 5 4 3 33 33 H 1.07998 * 119.92198 * 179.76381 * 6 5 4 34 34 H 1.08004 * 119.96430 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.04380 * 180.02562 * 8 7 6 36 36 H 1.08992 * 110.73062 * 259.22975 * 11 9 2 37 37 H 1.09000 * 110.72373 * 22.52584 * 11 9 2 38 38 H 1.09000 * 110.67017 * 204.15239 * 12 11 9 39 39 H 1.09007 * 110.66627 * 81.02022 * 12 11 9 40 40 H 1.09004 * 109.47351 * 300.20278 * 14 13 12 41 41 H 1.08996 * 109.47006 * 180.20154 * 14 13 12 42 42 H 1.08997 * 109.47279 * 182.48530 * 16 15 14 43 43 H 1.08994 * 109.47165 * 62.48212 * 16 15 14 44 44 H 1.09006 * 109.46999 * 302.48194 * 16 15 14 45 45 H 1.09000 * 109.47588 * 300.00034 * 17 15 14 46 46 H 1.09005 * 109.47279 * 59.99852 * 17 15 14 47 47 H 1.09002 * 109.47248 * 179.97438 * 17 15 14 48 48 H 1.09002 * 109.46982 * 299.99085 * 18 15 14 49 49 H 1.08999 * 109.47553 * 60.00270 * 18 15 14 50 50 H 0.97007 * 119.99607 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.91744 * 94.02542 * 27 13 12 52 52 H 1.09003 * 109.91328 * 215.31271 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2095 0.0000 4 6 1.4775 2.4095 0.1394 5 6 2.1716 3.6033 0.1439 6 6 3.5469 3.6059 -0.0009 7 6 4.2323 2.4136 -0.1452 8 6 3.5449 1.2158 -0.1456 9 6 2.1974 -1.2688 0.0006 10 1 3.2713 -1.0850 -0.0316 11 6 1.8305 -2.0996 1.2516 12 6 1.7638 -3.5458 0.6997 13 7 1.1642 -3.3681 -0.6477 14 6 1.4511 -4.5236 -1.5082 15 6 0.8638 -5.7877 -0.8772 16 6 1.7813 -6.2694 0.2485 17 6 -0.5219 -5.4770 -0.3080 18 6 0.7448 -6.8807 -1.9412 19 6 0.1657 -8.1256 -1.3199 20 1 -0.0914 -8.1362 -0.2709 21 6 -0.0350 -9.2513 -2.0903 22 7 0.2785 -9.2385 -3.3674 23 14 -0.7521 -10.7946 -1.3199 24 1 -2.2328 -10.7596 -1.4281 25 1 -0.2320 -11.9902 -2.0307 26 1 -0.3618 -10.8608 0.1113 27 6 1.7673 -2.1348 -1.1979 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5139 31 1 0.4030 2.4084 0.2485 32 1 1.6394 4.5363 0.2563 33 1 4.0869 4.5412 -0.0009 34 1 5.3065 2.4190 -0.2576 35 1 4.0808 0.2849 -0.2579 36 1 2.6053 -2.0129 2.0132 37 1 0.8624 -1.7931 1.6478 38 1 1.1244 -4.1677 1.3263 39 1 2.7630 -3.9746 0.6225 40 1 2.5299 -4.6383 -1.6148 41 1 1.0038 -4.3658 -2.4895 42 1 1.3861 -7.1942 0.6687 43 1 1.8311 -5.5086 1.0273 44 1 2.7804 -6.4487 -0.1488 45 1 -0.4371 -4.6983 0.4500 46 1 -1.1756 -5.1338 -1.1099 47 1 -0.9405 -6.3777 0.1411 48 1 0.0911 -6.5375 -2.7431 49 1 1.7321 -7.1021 -2.3467 50 1 0.1370 -10.0304 -3.9095 51 1 2.6366 -2.3857 -1.8057 52 1 1.0330 -1.5985 -1.7990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597225157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:46 Heat of formation + Delta-G solvation = 33.056066 kcal Electronic energy + Delta-G solvation = -27029.104076 eV Core-core repulsion = 23607.169531 eV Total energy + Delta-G solvation = -3421.934545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15636 -40.01565 -38.08671 -36.09835 -34.40366 -32.18735 -31.69329 -30.65080 -29.80562 -28.63297 -27.90473 -27.23946 -26.39504 -24.56613 -23.36561 -22.41010 -22.04870 -20.62628 -19.63302 -18.81105 -18.30306 -17.27247 -16.66393 -16.51810 -16.23081 -15.92569 -15.63440 -15.37835 -15.09411 -14.82590 -14.66165 -14.48078 -14.37737 -14.10326 -13.98873 -13.47705 -13.29752 -13.17026 -13.02081 -12.90096 -12.78747 -12.70206 -12.61791 -12.47554 -12.35792 -12.20376 -12.14118 -11.91304 -11.79326 -11.62709 -11.39436 -11.35690 -10.79618 -10.76982 -10.52865 -10.51048 -9.76520 -9.31942 -8.15397 -8.13811 -6.21382 0.60067 0.76870 1.40179 1.40746 1.51210 2.17745 2.43028 3.03645 3.07905 3.19387 3.63134 3.74378 3.88228 4.08589 4.14842 4.15376 4.26859 4.33720 4.35441 4.38195 4.44452 4.47130 4.62859 4.68576 4.70699 4.73847 4.74955 4.81915 4.84287 4.88773 4.95518 4.99837 5.02321 5.05922 5.09434 5.17779 5.20015 5.22965 5.26866 5.44425 5.52859 5.55044 5.58956 5.66538 5.68327 5.81378 5.85902 5.91663 5.99841 6.08426 6.11472 6.36102 6.39020 6.66513 6.93610 7.45771 8.97876 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.037083 B = 0.002328 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.878498 B =12025.755790 C =12103.484316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.622 5.622 3 C 0.204 3.796 4 C -0.210 4.210 5 C -0.079 4.079 6 C -0.193 4.193 7 C -0.080 4.080 8 C -0.216 4.216 9 C 0.147 3.853 10 H 0.101 0.899 11 C -0.127 4.127 12 C 0.030 3.970 13 N -0.508 5.508 14 C 0.069 3.931 15 C -0.051 4.051 16 C -0.143 4.143 17 C -0.103 4.103 18 C 0.041 3.959 19 C -0.512 4.512 20 H 0.066 0.934 21 C -0.007 4.007 22 N -0.938 5.938 23 Si 0.957 3.043 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.262 1.262 27 C 0.024 3.976 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.028 0.972 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.033 0.967 45 H 0.071 0.929 46 H 0.028 0.972 47 H 0.035 0.965 48 H -0.018 1.018 49 H -0.018 1.018 50 H 0.259 0.741 51 H 0.045 0.955 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 24.923 10.418 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.332 5.332 3 C 0.103 3.897 4 C -0.232 4.232 5 C -0.098 4.098 6 C -0.213 4.213 7 C -0.099 4.099 8 C -0.238 4.238 9 C 0.042 3.958 10 H 0.119 0.881 11 C -0.166 4.166 12 C -0.097 4.097 13 N -0.232 5.232 14 C -0.059 4.059 15 C -0.052 4.052 16 C -0.200 4.200 17 C -0.160 4.160 18 C 0.003 3.997 19 C -0.550 4.550 20 H 0.084 0.916 21 C -0.203 4.203 22 N -0.580 5.580 23 Si 0.782 3.218 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.186 1.186 27 C -0.105 4.105 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.001 0.999 49 H 0.000 1.000 50 H 0.068 0.932 51 H 0.063 0.937 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.582 24.694 10.289 27.141 hybrid contribution 0.483 -1.502 -0.660 1.710 sum 5.065 23.192 9.630 25.617 Atomic orbital electron populations 1.21621 0.78937 1.02940 1.01463 1.46551 1.05200 1.02011 1.79443 1.18091 0.91649 0.86153 0.93831 1.20892 1.00376 0.91377 1.10604 1.21188 0.94556 0.97710 0.96327 1.21186 0.94724 0.98505 1.06838 1.21160 1.00350 0.91919 0.96463 1.20906 0.92700 0.99259 1.10976 1.21852 0.96836 0.82981 0.94086 0.88118 1.22906 1.03068 0.93494 0.97092 1.23632 0.98336 0.96996 0.90784 1.64816 1.54020 1.01675 1.02729 1.22203 0.97271 0.90434 0.95990 1.20434 0.96118 0.92811 0.95800 1.22266 0.97745 1.01560 0.98418 1.21502 0.94985 0.99733 0.99810 1.19007 0.94000 0.93310 0.93344 1.21608 1.40068 0.97257 0.96047 0.91596 1.25941 0.96621 1.02411 0.95337 1.70114 1.50311 1.30200 1.07339 0.85565 0.78569 0.78775 0.78864 1.20139 1.21300 1.18620 1.23270 0.98281 0.91640 0.97288 0.92993 0.90970 0.91181 0.85353 0.84466 0.84921 0.84753 0.85870 0.89502 0.90282 0.88816 0.93181 0.95420 0.92839 0.93774 0.89538 0.94757 0.90988 0.95285 0.94579 0.99941 0.99974 0.93205 0.93705 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 8.77 127.77 1.12 2.71 16 2 N -0.62 -11.88 2.92 -693.18 -2.03 -13.90 16 3 C 0.20 4.06 6.53 38.22 0.25 4.31 16 4 C -0.21 -3.79 9.15 22.40 0.21 -3.58 16 5 C -0.08 -1.26 10.04 22.25 0.22 -1.04 16 6 C -0.19 -3.03 10.04 22.29 0.22 -2.81 16 7 C -0.08 -1.34 10.04 22.25 0.22 -1.12 16 8 C -0.22 -4.11 9.30 22.40 0.21 -3.90 16 9 C 0.15 2.84 3.33 45.86 0.15 2.99 16 10 H 0.10 1.81 5.40 -2.39 -0.01 1.80 16 11 C -0.13 -2.34 6.66 31.80 0.21 -2.13 16 12 C 0.03 0.68 4.05 86.65 0.35 1.03 16 13 N -0.51 -13.69 4.24 -882.97 -3.74 -17.43 16 14 C 0.07 2.37 4.19 86.30 0.36 2.73 16 15 C -0.05 -2.02 0.52 -52.18 -0.03 -2.05 16 16 C -0.14 -5.12 7.45 71.98 0.54 -4.58 16 17 C -0.10 -3.86 7.72 71.98 0.56 -3.30 16 18 C 0.04 2.14 3.96 29.85 0.12 2.26 16 19 C -0.51 -28.43 7.62 25.60 0.20 -28.24 16 20 H 0.07 3.51 5.68 -2.91 -0.02 3.49 16 21 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 22 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 23 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 26 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 27 C 0.02 0.57 5.84 86.44 0.51 1.07 16 28 H 0.05 0.82 7.90 -2.39 -0.02 0.80 16 29 H 0.07 1.09 6.50 -2.38 -0.02 1.08 16 30 H 0.07 1.36 6.69 -2.39 -0.02 1.34 16 31 H 0.13 2.00 6.34 -2.91 -0.02 1.98 16 32 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.13 1.53 8.06 -2.91 -0.02 1.50 16 34 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.12 2.16 5.79 -2.91 -0.02 2.14 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.50 7.02 -2.39 -0.02 1.48 16 38 H 0.09 2.22 4.96 -2.39 -0.01 2.21 16 39 H 0.05 1.16 7.12 -2.38 -0.02 1.14 16 40 H 0.03 0.94 7.82 -2.38 -0.02 0.92 16 41 H 0.05 2.00 8.00 -2.39 -0.02 1.98 16 42 H 0.04 1.73 6.54 -2.39 -0.02 1.72 16 43 H 0.09 2.46 3.82 -2.39 -0.01 2.45 16 44 H 0.03 1.23 8.09 -2.38 -0.02 1.21 16 45 H 0.07 2.27 5.52 -2.39 -0.01 2.25 16 46 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.04 1.44 6.62 -2.39 -0.02 1.43 16 48 H -0.02 -1.03 8.13 -2.39 -0.02 -1.05 16 49 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 50 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 51 H 0.04 1.08 7.70 -2.39 -0.02 1.06 16 52 H 0.08 1.90 6.84 -2.39 -0.02 1.88 16 Total: -1.00 -64.57 381.37 3.31 -61.26 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.90 Total: 16.46 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 5.88 Total: -35.55 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -5.49 Total: -88.85 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.57 3.31 -61.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597225157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.315 kcal (2) G-P(sol) polarization free energy of solvation -64.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds