Wall clock time and date at job start Tue Mar 31 2020 11:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47126 * 2 1 4 4 H 1.08994 * 109.47358 * 55.13085 * 3 2 1 5 5 C 1.53005 * 109.46937 * 175.13743 * 3 2 1 6 6 C 1.53003 * 109.46715 * 184.99757 * 5 3 2 7 7 C 1.50704 * 109.46659 * 179.97438 * 6 5 3 8 8 C 1.38234 * 119.99993 * 269.72267 * 7 6 5 9 9 C 1.38230 * 119.99843 * 179.76875 * 8 7 6 10 10 C 1.38232 * 120.00211 * 0.51167 * 9 8 7 11 11 C 1.38234 * 119.99973 * 359.74184 * 10 9 8 12 12 C 1.38236 * 119.99818 * 90.00227 * 7 6 5 13 13 N 1.46899 * 109.46756 * 295.13062 * 3 2 1 14 14 C 1.46897 * 111.00029 * 101.93098 * 13 3 2 15 15 C 1.53037 * 109.45563 * 86.54878 * 14 13 3 16 16 C 1.53181 * 109.31874 * 181.38107 * 15 14 13 17 17 N 1.46931 * 108.77570 * 305.36594 * 16 15 14 18 18 C 1.36939 * 120.62796 * 233.58520 * 17 16 15 19 19 H 1.07992 * 119.99909 * 28.06899 * 18 17 16 20 20 C 1.38811 * 119.99727 * 208.06995 * 18 17 16 21 21 N 1.31622 * 120.00340 * 14.77341 * 20 18 17 22 22 Si 1.86799 * 119.99886 * 194.77701 * 20 18 17 23 23 H 1.48505 * 109.47261 * 89.99796 * 22 20 18 24 24 H 1.48507 * 109.47037 * 209.99606 * 22 20 18 25 25 H 1.48498 * 109.46990 * 329.99903 * 22 20 18 26 26 C 1.46924 * 118.73628 * 53.60973 * 17 16 15 27 27 C 1.53040 * 109.46368 * 206.61461 * 14 13 3 28 28 H 1.08998 * 109.46738 * 185.86533 * 1 2 3 29 29 H 1.08999 * 109.46973 * 305.85963 * 1 2 3 30 30 H 1.09001 * 109.47148 * 65.86268 * 1 2 3 31 31 H 1.09001 * 109.46842 * 239.99633 * 2 1 3 32 32 H 1.09003 * 109.46891 * 119.99803 * 2 1 3 33 33 H 1.08995 * 109.46870 * 304.99091 * 5 3 2 34 34 H 1.08995 * 109.47314 * 64.99478 * 5 3 2 35 35 H 1.08998 * 109.47163 * 299.99760 * 6 5 3 36 36 H 1.08995 * 109.47457 * 59.99809 * 6 5 3 37 37 H 1.08000 * 119.99840 * 0.02562 * 8 7 6 38 38 H 1.07998 * 119.99727 * 180.22921 * 9 8 7 39 39 H 1.07999 * 120.00428 * 179.72679 * 10 9 8 40 40 H 1.07998 * 120.00164 * 179.97438 * 11 10 9 41 41 H 1.08000 * 120.00218 * 359.97438 * 12 7 6 42 42 H 1.00906 * 111.00544 * 225.87998 * 13 3 2 43 43 H 1.09006 * 109.45767 * 326.58272 * 14 13 3 44 44 H 1.09004 * 109.49572 * 301.33816 * 15 14 13 45 45 H 1.09002 * 109.49407 * 61.42583 * 15 14 13 46 46 H 1.08997 * 109.59485 * 185.57672 * 16 15 14 47 47 H 1.09007 * 109.58896 * 65.15304 * 16 15 14 48 48 H 0.96995 * 120.00517 * 179.97438 * 21 20 18 49 49 H 1.09009 * 109.58218 * 186.60646 * 26 17 16 50 50 H 1.08993 * 109.70829 * 66.24668 * 26 17 16 51 51 H 1.09002 * 109.49425 * 298.57873 * 27 14 13 52 52 H 1.08997 * 109.49977 * 58.66800 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6073 1.9809 0.8431 5 6 3.5652 1.4442 0.1223 6 6 4.0651 2.8848 0.2476 7 6 5.5673 2.8864 0.3687 8 6 6.1602 2.8225 1.6158 9 6 7.5381 2.8192 1.7265 10 6 8.3230 2.8903 0.5909 11 6 7.7300 2.9595 -0.6559 12 6 6.3521 2.9575 -0.7670 13 7 1.6487 2.1001 -1.2539 14 6 0.4901 2.9794 -1.0479 15 6 0.9716 4.3591 -0.5936 16 6 -0.2403 5.2628 -0.3465 17 7 -1.0705 5.2825 -1.5586 18 6 -1.4252 6.4695 -2.1421 19 1 -0.7870 7.3343 -2.0379 20 6 -2.6052 6.5609 -2.8674 21 7 -3.5185 5.6192 -2.7600 22 14 -2.8970 8.0205 -3.9961 23 1 -2.3785 7.7089 -5.3524 24 1 -4.3530 8.3016 -4.0753 25 1 -2.1914 9.2111 -3.4579 26 6 -1.5132 4.0044 -2.1323 27 6 -0.2869 3.1148 -2.3594 28 1 -0.3633 -1.0223 0.1050 29 1 -0.3633 0.6020 0.8329 30 1 -0.3633 0.4202 -0.9378 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8593 0.8793 1.0068 34 1 4.0013 0.9840 -0.7643 35 1 3.7709 3.4497 -0.6369 36 1 3.6290 3.3449 1.1343 37 1 5.5470 2.7711 2.5033 38 1 8.0013 2.7655 2.7007 39 1 9.3995 2.8922 0.6777 40 1 8.3432 3.0155 -1.5431 41 1 5.8888 3.0116 -1.7411 42 1 2.4231 2.6100 -1.6520 43 1 -0.1591 2.5516 -0.2838 44 1 1.5448 4.2590 0.3282 45 1 1.6009 4.7979 -1.3679 46 1 0.0979 6.2737 -0.1189 47 1 -0.8224 4.8733 0.4888 48 1 -4.3432 5.6832 -3.2666 49 1 -2.0148 4.1850 -3.0832 50 1 -2.2001 3.5111 -1.4448 51 1 0.3541 3.5653 -3.1172 52 1 -0.6096 2.1291 -2.6946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599026769.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:24 Heat of formation + Delta-G solvation = 20.962544 kcal Electronic energy + Delta-G solvation = -27001.867656 eV Core-core repulsion = 23579.408696 eV Total energy + Delta-G solvation = -3422.458959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.63694 -38.60759 -36.51647 -33.83168 -33.05443 -31.29480 -31.07435 -30.32033 -29.63640 -28.37056 -25.94941 -24.32437 -22.76897 -22.71582 -22.10619 -21.36568 -20.89337 -20.40538 -19.01618 -16.97314 -16.75526 -15.93851 -15.56658 -15.21839 -15.01599 -14.62684 -13.97731 -13.86803 -13.73282 -13.54813 -13.43524 -13.23267 -13.15856 -13.01113 -12.93047 -12.65968 -12.36916 -12.16675 -11.68326 -11.55599 -11.34592 -11.32299 -11.07384 -10.98318 -10.86902 -10.72141 -10.66964 -10.58965 -10.46014 -10.17320 -10.11129 -9.92358 -9.64805 -9.38666 -9.11459 -8.85506 -8.45035 -7.95803 -6.62718 -5.74461 -3.18237 1.16912 1.20767 3.39719 3.46308 3.47428 3.58937 4.42866 4.49296 4.52259 4.63633 4.78605 4.90877 4.94824 4.98618 5.11938 5.31446 5.34270 5.38969 5.40684 5.46685 5.48345 5.52261 5.58192 5.61843 5.75402 5.78727 5.85025 5.87618 5.92091 5.96715 6.04077 6.11668 6.16053 6.18304 6.27733 6.31717 6.33556 6.38594 6.47726 6.52587 6.57788 6.67899 6.73520 6.77221 6.82323 6.91589 6.99071 7.44303 7.49399 7.74164 7.77916 7.83727 8.50066 9.26064 9.89092 10.45701 11.33536 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.002992 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.557907 B = 9356.276020 C =10690.715868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C 0.086 3.914 4 H 0.052 0.948 5 C -0.120 4.120 6 C -0.087 4.087 7 C -0.074 4.074 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.130 4.130 11 C -0.119 4.119 12 C -0.117 4.117 13 N -0.681 5.681 14 C 0.095 3.905 15 C -0.159 4.159 16 C 0.149 3.851 17 N -0.592 5.592 18 C -0.250 4.250 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.170 3.830 27 C -0.124 4.124 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.335 0.665 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.014 0.986 48 H 0.253 0.747 49 H 0.090 0.910 50 H 0.015 0.985 51 H 0.051 0.949 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.266 -10.248 7.525 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.024 4.024 4 H 0.070 0.930 5 C -0.158 4.158 6 C -0.124 4.124 7 C -0.074 4.074 8 C -0.137 4.137 9 C -0.138 4.138 10 C -0.148 4.148 11 C -0.137 4.137 12 C -0.135 4.135 13 N -0.313 5.313 14 C -0.014 4.014 15 C -0.200 4.200 16 C 0.022 3.978 17 N -0.315 5.315 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.549 5.549 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.043 3.957 27 C -0.164 4.164 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.155 0.845 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.032 0.968 48 H 0.063 0.937 49 H 0.108 0.892 50 H 0.033 0.967 51 H 0.069 0.931 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.713 -10.777 7.230 22.773 hybrid contribution 0.287 1.521 -0.059 1.549 sum 19.000 -9.255 7.170 22.318 Atomic orbital electron populations 1.21755 0.95714 1.00560 1.02595 1.21509 0.96319 0.95737 1.00956 1.21626 0.93064 0.95564 0.92170 0.93042 1.21884 0.95574 0.95675 1.02627 1.20745 0.90680 0.97802 1.03178 1.19945 0.95791 0.98506 0.93158 1.21071 0.94804 1.00718 0.97108 1.21130 0.93884 1.00292 0.98488 1.21124 0.99695 1.01166 0.92781 1.21157 0.94912 1.00060 0.97538 1.21118 0.93690 1.00290 0.98378 1.60782 1.09534 1.35455 1.25492 1.21654 0.91286 0.89963 0.98513 1.22724 0.99764 0.97925 0.99569 1.20809 0.90560 0.96736 0.89680 1.44064 1.59033 1.02615 1.25784 1.19202 1.01503 0.89645 1.27616 0.91820 1.25052 0.95027 0.97933 1.01722 1.70005 1.07234 1.34739 1.42955 0.86277 0.76966 0.82314 0.81123 1.21465 1.21769 1.20517 1.20833 0.91114 0.83957 0.99751 1.22174 0.99082 0.99536 0.95628 0.93683 0.93472 0.91344 0.91735 0.92901 0.91493 0.91167 0.90642 0.90948 0.86203 0.86284 0.86369 0.86192 0.85962 0.84542 0.91087 0.93676 0.92433 0.93135 0.96767 0.93666 0.89162 0.96710 0.93050 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.66 37.16 0.32 -1.53 16 2 C -0.11 -1.21 5.61 -26.73 -0.15 -1.36 16 3 C 0.09 0.99 2.03 -67.71 -0.14 0.86 16 4 H 0.05 0.65 7.26 -51.93 -0.38 0.27 16 5 C -0.12 -1.18 4.64 -26.73 -0.12 -1.30 16 6 C -0.09 -0.87 5.08 -27.88 -0.14 -1.01 16 7 C -0.07 -0.75 5.13 -104.62 -0.54 -1.29 16 8 C -0.12 -1.14 9.70 -39.59 -0.38 -1.52 16 9 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 10 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 11 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 12 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 13 N -0.68 -9.21 5.80 -99.70 -0.58 -9.79 16 14 C 0.10 1.56 1.49 -67.67 -0.10 1.46 16 15 C -0.16 -2.70 5.31 -26.62 -0.14 -2.84 16 16 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 17 N -0.59 -14.91 3.00 -172.32 -0.52 -15.43 16 18 C -0.25 -6.92 9.60 -15.06 -0.14 -7.07 16 19 H 0.06 1.74 7.87 -52.49 -0.41 1.33 16 20 C 0.00 0.03 4.98 -17.43 -0.09 -0.06 16 21 N -0.90 -26.44 11.05 55.49 0.61 -25.83 16 22 Si 0.90 21.90 29.58 -169.99 -5.03 16.87 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 27 C -0.12 -2.41 5.69 -26.61 -0.15 -2.56 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 30 H 0.07 0.98 7.22 -51.93 -0.37 0.61 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.81 6.59 -51.93 -0.34 0.47 16 36 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.34 4.39 6.29 -39.29 -0.25 4.14 16 43 H 0.07 1.23 6.27 -51.93 -0.33 0.91 16 44 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.09 2.45 5.97 -51.92 -0.31 2.14 16 50 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 52 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 399.46 15.07 6.02 6.02 Total: -1.00 -29.17 399.46 -12.40 -41.57 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -9.51 Total: 3.61 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -3.40 Total: -17.02 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.48 Total: -51.05 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.17 -12.40 -41.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599026769.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.532 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds