Wall clock time and date at job start Tue Mar 31 2020 11:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47126 * 2 1 4 4 H 1.08994 * 109.47358 * 55.13085 * 3 2 1 5 5 C 1.53005 * 109.46937 * 175.13743 * 3 2 1 6 6 C 1.53003 * 109.46715 * 184.99757 * 5 3 2 7 7 C 1.50704 * 109.46659 * 179.97438 * 6 5 3 8 8 C 1.38234 * 119.99993 * 269.72267 * 7 6 5 9 9 C 1.38230 * 119.99843 * 179.76875 * 8 7 6 10 10 C 1.38232 * 120.00211 * 0.51167 * 9 8 7 11 11 C 1.38234 * 119.99973 * 359.74184 * 10 9 8 12 12 C 1.38236 * 119.99818 * 90.00227 * 7 6 5 13 13 N 1.46899 * 109.46756 * 295.13062 * 3 2 1 14 14 C 1.46897 * 111.00029 * 101.93098 * 13 3 2 15 15 C 1.53037 * 109.45563 * 86.54878 * 14 13 3 16 16 C 1.53181 * 109.31874 * 181.38107 * 15 14 13 17 17 N 1.46931 * 108.77570 * 305.36594 * 16 15 14 18 18 C 1.36939 * 120.62796 * 233.58520 * 17 16 15 19 19 H 1.07992 * 119.99909 * 28.06899 * 18 17 16 20 20 C 1.38811 * 119.99727 * 208.06995 * 18 17 16 21 21 N 1.31622 * 120.00340 * 14.77341 * 20 18 17 22 22 Si 1.86799 * 119.99886 * 194.77701 * 20 18 17 23 23 H 1.48505 * 109.47261 * 89.99796 * 22 20 18 24 24 H 1.48507 * 109.47037 * 209.99606 * 22 20 18 25 25 H 1.48498 * 109.46990 * 329.99903 * 22 20 18 26 26 C 1.46924 * 118.73628 * 53.60973 * 17 16 15 27 27 C 1.53040 * 109.46368 * 206.61461 * 14 13 3 28 28 H 1.08998 * 109.46738 * 185.86533 * 1 2 3 29 29 H 1.08999 * 109.46973 * 305.85963 * 1 2 3 30 30 H 1.09001 * 109.47148 * 65.86268 * 1 2 3 31 31 H 1.09001 * 109.46842 * 239.99633 * 2 1 3 32 32 H 1.09003 * 109.46891 * 119.99803 * 2 1 3 33 33 H 1.08995 * 109.46870 * 304.99091 * 5 3 2 34 34 H 1.08995 * 109.47314 * 64.99478 * 5 3 2 35 35 H 1.08998 * 109.47163 * 299.99760 * 6 5 3 36 36 H 1.08995 * 109.47457 * 59.99809 * 6 5 3 37 37 H 1.08000 * 119.99840 * 0.02562 * 8 7 6 38 38 H 1.07998 * 119.99727 * 180.22921 * 9 8 7 39 39 H 1.07999 * 120.00428 * 179.72679 * 10 9 8 40 40 H 1.07998 * 120.00164 * 179.97438 * 11 10 9 41 41 H 1.08000 * 120.00218 * 359.97438 * 12 7 6 42 42 H 1.00906 * 111.00544 * 225.87998 * 13 3 2 43 43 H 1.09006 * 109.45767 * 326.58272 * 14 13 3 44 44 H 1.09004 * 109.49572 * 301.33816 * 15 14 13 45 45 H 1.09002 * 109.49407 * 61.42583 * 15 14 13 46 46 H 1.08997 * 109.59485 * 185.57672 * 16 15 14 47 47 H 1.09007 * 109.58896 * 65.15304 * 16 15 14 48 48 H 0.96995 * 120.00517 * 179.97438 * 21 20 18 49 49 H 1.09009 * 109.58218 * 186.60646 * 26 17 16 50 50 H 1.08993 * 109.70829 * 66.24668 * 26 17 16 51 51 H 1.09002 * 109.49425 * 298.57873 * 27 14 13 52 52 H 1.08997 * 109.49977 * 58.66800 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6073 1.9809 0.8431 5 6 3.5652 1.4442 0.1223 6 6 4.0651 2.8848 0.2476 7 6 5.5673 2.8864 0.3687 8 6 6.1602 2.8225 1.6158 9 6 7.5381 2.8192 1.7265 10 6 8.3230 2.8903 0.5909 11 6 7.7300 2.9595 -0.6559 12 6 6.3521 2.9575 -0.7670 13 7 1.6487 2.1001 -1.2539 14 6 0.4901 2.9794 -1.0479 15 6 0.9716 4.3591 -0.5936 16 6 -0.2403 5.2628 -0.3465 17 7 -1.0705 5.2825 -1.5586 18 6 -1.4252 6.4695 -2.1421 19 1 -0.7870 7.3343 -2.0379 20 6 -2.6052 6.5609 -2.8674 21 7 -3.5185 5.6192 -2.7600 22 14 -2.8970 8.0205 -3.9961 23 1 -2.3785 7.7089 -5.3524 24 1 -4.3530 8.3016 -4.0753 25 1 -2.1914 9.2111 -3.4579 26 6 -1.5132 4.0044 -2.1323 27 6 -0.2869 3.1148 -2.3594 28 1 -0.3633 -1.0223 0.1050 29 1 -0.3633 0.6020 0.8329 30 1 -0.3633 0.4202 -0.9378 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8593 0.8793 1.0068 34 1 4.0013 0.9840 -0.7643 35 1 3.7709 3.4497 -0.6369 36 1 3.6290 3.3449 1.1343 37 1 5.5470 2.7711 2.5033 38 1 8.0013 2.7655 2.7007 39 1 9.3995 2.8922 0.6777 40 1 8.3432 3.0155 -1.5431 41 1 5.8888 3.0116 -1.7411 42 1 2.4231 2.6100 -1.6520 43 1 -0.1591 2.5516 -0.2838 44 1 1.5448 4.2590 0.3282 45 1 1.6009 4.7979 -1.3679 46 1 0.0979 6.2737 -0.1189 47 1 -0.8224 4.8733 0.4888 48 1 -4.3432 5.6832 -3.2666 49 1 -2.0148 4.1850 -3.0832 50 1 -2.2001 3.5111 -1.4448 51 1 0.3541 3.5653 -3.1172 52 1 -0.6096 2.1291 -2.6946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599026769.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:24 Heat of formation + Delta-G solvation = 7.465865 kcal Electronic energy + Delta-G solvation = -27002.452915 eV Core-core repulsion = 23579.408696 eV Total energy + Delta-G solvation = -3423.044219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.45536 -39.78437 -37.93933 -35.17327 -34.20728 -32.93008 -31.73412 -31.71270 -31.00892 -29.71343 -27.10494 -26.01014 -23.81044 -23.51901 -23.42555 -23.03601 -21.69567 -21.40528 -20.59603 -18.71282 -17.61920 -17.03859 -16.79408 -16.42616 -15.98864 -15.92103 -15.36927 -15.29440 -14.95932 -14.78095 -14.63947 -14.37694 -14.22584 -14.13612 -14.05701 -13.82721 -13.55313 -13.29874 -13.12811 -12.92912 -12.65212 -12.59224 -12.45002 -12.24507 -12.10980 -12.00876 -11.91587 -11.76507 -11.73098 -11.63967 -11.60383 -11.42378 -11.25169 -11.03361 -10.53573 -9.78404 -9.55528 -9.13754 -8.67468 -7.86316 -5.33353 0.49260 0.53754 1.46050 1.47562 1.56245 2.50867 2.91370 3.23241 3.34305 3.70525 3.71162 3.92897 4.02182 4.04745 4.18689 4.23444 4.25293 4.29181 4.35079 4.43553 4.44065 4.56089 4.58009 4.65817 4.69768 4.72209 4.76196 4.78914 4.87557 4.94226 4.96995 5.01311 5.11138 5.14174 5.18493 5.19444 5.21539 5.25491 5.30532 5.35219 5.38127 5.47696 5.53457 5.58246 5.62137 5.66186 5.66575 5.77647 5.78608 6.17322 6.29941 6.40989 6.64844 7.15661 7.87012 8.38348 9.19546 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.002992 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.557907 B = 9356.276020 C =10690.715868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C 0.088 3.912 4 H 0.046 0.954 5 C -0.108 4.108 6 C -0.081 4.081 7 C -0.087 4.087 8 C -0.131 4.131 9 C -0.127 4.127 10 C -0.136 4.136 11 C -0.128 4.128 12 C -0.133 4.133 13 N -0.678 5.678 14 C 0.110 3.890 15 C -0.143 4.143 16 C 0.144 3.856 17 N -0.610 5.610 18 C -0.262 4.262 19 H 0.065 0.935 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.269 1.269 26 C 0.178 3.822 27 C -0.110 4.110 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.341 0.659 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.010 0.990 48 H 0.250 0.750 49 H 0.054 0.946 50 H -0.008 1.008 51 H 0.044 0.956 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.745 -10.699 8.307 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.022 4.022 4 H 0.064 0.936 5 C -0.146 4.146 6 C -0.118 4.118 7 C -0.087 4.087 8 C -0.149 4.149 9 C -0.145 4.145 10 C -0.154 4.154 11 C -0.146 4.146 12 C -0.151 4.151 13 N -0.309 5.309 14 C 0.000 4.000 15 C -0.183 4.183 16 C 0.018 3.982 17 N -0.333 5.333 18 C -0.392 4.392 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.193 1.193 26 C 0.052 3.948 27 C -0.149 4.149 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.028 0.972 48 H 0.059 0.941 49 H 0.073 0.927 50 H 0.010 0.990 51 H 0.063 0.937 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.230 -11.237 8.029 25.326 hybrid contribution -0.448 1.637 -0.241 1.714 sum 20.781 -9.600 7.788 24.180 Atomic orbital electron populations 1.21728 0.96757 1.00980 1.01033 1.21500 0.95266 0.95550 1.01865 1.21661 0.94356 0.95419 0.90724 0.93561 1.21767 0.93868 0.95820 1.03115 1.20662 0.90894 0.97647 1.02640 1.20004 0.95736 0.99327 0.93594 1.21282 0.95471 1.00851 0.97265 1.21436 0.93776 0.99675 0.99567 1.21448 1.00914 1.00446 0.92573 1.21428 0.94870 0.99773 0.98534 1.21287 0.94320 1.00889 0.98583 1.60666 1.08902 1.34498 1.26858 1.21334 0.92052 0.90284 0.96288 1.22548 0.97907 0.97001 1.00861 1.20974 0.91367 0.97817 0.88034 1.44314 1.59558 1.02209 1.27265 1.19528 1.01461 0.90547 1.27679 0.91717 1.25822 0.94935 1.00669 1.03322 1.70171 1.07552 1.36622 1.43913 0.85253 0.76467 0.79563 0.79080 1.21194 1.22096 1.19335 1.20601 0.92565 0.84448 0.97221 1.21926 0.97231 0.98548 0.97230 0.92523 0.94046 0.93642 0.91812 0.90949 0.90366 0.91210 0.91488 0.91062 0.85248 0.84372 0.84355 0.84685 0.85720 0.83913 0.91737 0.90814 0.92692 0.93186 0.97183 0.94128 0.92723 0.99001 0.93708 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.66 71.98 0.62 -2.87 16 2 C -0.10 -2.10 5.61 30.59 0.17 -1.93 16 3 C 0.09 1.85 2.03 44.92 0.09 1.94 16 4 H 0.05 1.06 7.26 -2.39 -0.02 1.04 16 5 C -0.11 -1.86 4.64 30.60 0.14 -1.71 16 6 C -0.08 -1.46 5.08 29.85 0.15 -1.31 16 7 C -0.09 -1.61 5.13 -19.86 -0.10 -1.71 16 8 C -0.13 -2.24 9.70 22.27 0.22 -2.02 16 9 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 10 C -0.14 -2.04 10.05 22.27 0.22 -1.82 16 11 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 12 C -0.13 -2.44 9.70 22.27 0.22 -2.23 16 13 N -0.68 -17.23 5.80 -469.34 -2.72 -19.95 16 14 C 0.11 3.54 1.49 44.94 0.07 3.60 16 15 C -0.14 -4.66 5.31 30.67 0.16 -4.49 16 16 C 0.14 6.06 6.52 86.36 0.56 6.62 16 17 N -0.61 -31.31 3.00 -699.11 -2.10 -33.40 16 18 C -0.26 -14.72 9.60 84.03 0.81 -13.91 16 19 H 0.07 3.55 7.87 -2.91 -0.02 3.53 16 20 C -0.05 -2.98 4.98 84.86 0.42 -2.56 16 21 N -0.94 -56.49 11.05 21.65 0.24 -56.25 16 22 Si 0.97 45.66 29.58 68.60 2.03 47.69 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.18 8.86 5.30 86.36 0.46 9.32 16 27 C -0.11 -4.28 5.69 30.67 0.17 -4.11 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 1.01 7.90 -2.39 -0.02 0.99 16 30 H 0.04 1.27 7.22 -2.39 -0.02 1.26 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.32 6.59 -2.39 -0.02 1.30 16 36 H 0.07 1.29 8.08 -2.39 -0.02 1.28 16 37 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.34 8.27 6.29 -89.69 -0.56 7.71 16 43 H 0.06 2.20 6.27 -2.38 -0.01 2.18 16 44 H 0.07 2.01 7.75 -2.39 -0.02 2.00 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 47 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 48 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 49 H 0.05 3.10 5.97 -2.38 -0.01 3.09 16 50 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 51 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -63.80 399.46 2.58 -61.22 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.30 Total: 23.47 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 4.83 Total: -22.78 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -4.58 Total: -109.61 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -63.80 2.58 -61.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599026769.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.691 kcal (2) G-P(sol) polarization free energy of solvation -63.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds