Wall clock time and date at job start Tue Mar 31 2020 11:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47032 * 2 1 4 4 H 1.08998 * 109.47020 * 53.62373 * 3 2 1 5 5 C 1.52999 * 109.46773 * 293.62426 * 3 2 1 6 6 C 1.53000 * 109.46712 * 175.00119 * 5 3 2 7 7 C 1.50698 * 109.47359 * 180.02562 * 6 5 3 8 8 C 1.38234 * 119.99702 * 269.72861 * 7 6 5 9 9 C 1.38240 * 119.99629 * 179.76264 * 8 7 6 10 10 C 1.38228 * 119.99939 * 0.50869 * 9 8 7 11 11 C 1.38229 * 120.00351 * 359.74543 * 10 9 8 12 12 C 1.38236 * 119.99994 * 89.99707 * 7 6 5 13 13 N 1.46894 * 109.46821 * 173.62576 * 3 2 1 14 14 C 1.46904 * 111.00102 * 274.89697 * 13 3 2 15 15 C 1.53042 * 109.45980 * 273.65542 * 14 13 3 16 16 C 1.53198 * 109.31491 * 178.59959 * 15 14 13 17 17 N 1.46927 * 108.76108 * 54.65178 * 16 15 14 18 18 C 1.36939 * 120.62620 * 126.36527 * 17 16 15 19 19 H 1.07998 * 120.00161 * 329.55502 * 18 17 16 20 20 C 1.38811 * 119.99840 * 149.55239 * 18 17 16 21 21 N 1.31616 * 119.99811 * 342.26147 * 20 18 17 22 22 Si 1.86803 * 120.00050 * 162.26667 * 20 18 17 23 23 H 1.48495 * 109.47227 * 59.99458 * 22 20 18 24 24 H 1.48498 * 109.47215 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46895 * 299.99710 * 22 20 18 26 26 C 1.46921 * 118.74334 * 306.38224 * 17 16 15 27 27 C 1.53039 * 109.46317 * 153.60151 * 14 13 3 28 28 H 1.09003 * 109.47187 * 64.00261 * 1 2 3 29 29 H 1.09006 * 109.47334 * 304.00074 * 1 2 3 30 30 H 1.09005 * 109.47595 * 184.00209 * 1 2 3 31 31 H 1.08999 * 109.47048 * 119.99855 * 2 1 3 32 32 H 1.09001 * 109.47218 * 239.99954 * 2 1 3 33 33 H 1.09000 * 109.47309 * 294.99777 * 5 3 2 34 34 H 1.09001 * 109.47093 * 55.00547 * 5 3 2 35 35 H 1.08998 * 109.47233 * 300.00339 * 6 5 3 36 36 H 1.08999 * 109.47419 * 60.00055 * 6 5 3 37 37 H 1.07998 * 120.00537 * 359.97438 * 8 7 6 38 38 H 1.08002 * 119.99711 * 180.22785 * 9 8 7 39 39 H 1.08010 * 119.99582 * 179.72711 * 10 9 8 40 40 H 1.07997 * 120.00143 * 179.97438 * 11 10 9 41 41 H 1.07996 * 120.00046 * 0.02562 * 12 7 6 42 42 H 1.00903 * 111.00700 * 38.84782 * 13 3 2 43 43 H 1.09004 * 109.45946 * 33.62087 * 14 13 3 44 44 H 1.09002 * 109.49744 * 298.56714 * 15 14 13 45 45 H 1.09000 * 109.50014 * 58.66145 * 15 14 13 46 46 H 1.08998 * 109.59343 * 294.86414 * 16 15 14 47 47 H 1.09000 * 109.70030 * 174.50338 * 16 15 14 48 48 H 0.97010 * 119.99837 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.58657 * 293.83069 * 26 17 16 50 50 H 1.08997 * 109.70276 * 173.46646 * 26 17 16 51 51 H 1.09002 * 109.49279 * 301.33425 * 27 14 13 52 52 H 1.08992 * 109.50001 * 61.39713 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5864 1.9882 0.8274 5 6 1.6649 2.1160 -1.3216 6 6 2.0639 3.5922 -1.2729 7 6 1.6940 4.2558 -2.5744 8 6 2.6023 4.2890 -3.6159 9 6 2.2612 4.8935 -4.8114 10 6 1.0157 5.4738 -4.9618 11 6 0.1093 5.4453 -3.9185 12 6 0.4484 4.8362 -2.7247 13 7 3.5008 1.4454 0.1538 14 6 3.8812 1.3799 1.5712 15 6 3.9143 2.7938 2.1560 16 6 4.2770 2.7190 3.6425 17 7 5.5376 1.9777 3.7846 18 6 6.5931 2.5208 4.4674 19 1 6.7330 3.5916 4.4826 20 6 7.4832 1.6950 5.1402 21 7 7.1448 0.4551 5.4237 22 14 9.1612 2.3435 5.6433 23 1 8.9907 3.5044 6.5535 24 1 9.9162 1.2732 6.3430 25 1 9.9105 2.7688 4.4338 26 6 5.6444 0.6430 3.1799 27 6 5.2660 0.7412 1.6986 28 1 -0.3634 0.4505 -0.9237 29 1 -0.3634 0.5747 0.8520 30 1 -0.3634 -1.0252 0.0717 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.1892 1.6248 -2.1413 34 1 0.5892 2.0353 -1.4781 35 1 1.5397 4.0834 -0.4532 36 1 3.1396 3.6730 -1.1164 37 1 3.5772 3.8398 -3.4968 38 1 2.9695 4.9162 -5.6264 39 1 0.7508 5.9499 -5.8944 40 1 -0.8636 5.8991 -4.0359 41 1 -0.2595 4.8144 -1.9094 42 1 3.9210 0.6911 -0.3684 43 1 3.1525 0.7790 2.1153 44 1 4.6604 3.3882 1.6287 45 1 2.9340 3.2570 2.0438 46 1 3.4860 2.2025 4.1862 47 1 4.3980 3.7258 4.0424 48 1 7.7667 -0.1220 5.8942 49 1 4.9648 -0.0428 3.6859 50 1 6.6674 0.2785 3.2723 51 1 5.2479 -0.2569 1.2609 52 1 5.9992 1.3547 1.1752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599026771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:27 Heat of formation + Delta-G solvation = 18.803890 kcal Electronic energy + Delta-G solvation = -26694.584921 eV Core-core repulsion = 23272.032355 eV Total energy + Delta-G solvation = -3422.552566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.48639 -38.52497 -36.61524 -33.85612 -33.06793 -31.49729 -30.99288 -30.09290 -29.56935 -28.57414 -25.56223 -24.21165 -23.20944 -22.66943 -22.25407 -21.37257 -20.91749 -20.10196 -19.01373 -16.86297 -16.72525 -15.71885 -15.31367 -15.22412 -15.00126 -14.70121 -14.48313 -13.95735 -13.72501 -13.60895 -13.46698 -13.36847 -13.01450 -13.00908 -12.73320 -12.46951 -12.34714 -11.94463 -11.80549 -11.59702 -11.42729 -11.31995 -11.18107 -11.02678 -10.97556 -10.70246 -10.67464 -10.57688 -10.40310 -10.29029 -10.15222 -9.90130 -9.55975 -9.38652 -9.03765 -8.77395 -8.43533 -8.04031 -6.60270 -5.76599 -3.19662 1.26246 1.28478 3.40499 3.45920 3.47895 3.67860 4.39047 4.52798 4.61769 4.75796 4.83237 4.89866 4.96505 5.03284 5.20102 5.23481 5.37898 5.38997 5.42497 5.47474 5.47806 5.51684 5.59741 5.65613 5.74200 5.78002 5.85276 5.89036 5.89877 5.97862 6.01125 6.05928 6.15387 6.21881 6.27054 6.36131 6.37653 6.39169 6.39713 6.55544 6.60220 6.65658 6.68885 6.70898 6.88197 6.91742 7.09405 7.37756 7.44191 7.64625 7.71816 7.83824 8.49852 9.24876 9.88312 10.47103 11.32208 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.002709 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.766173 B =10335.056555 C =11378.984021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.154 4.154 3 C 0.087 3.913 4 H 0.077 0.923 5 C -0.096 4.096 6 C -0.076 4.076 7 C -0.072 4.072 8 C -0.117 4.117 9 C -0.120 4.120 10 C -0.133 4.133 11 C -0.121 4.121 12 C -0.122 4.122 13 N -0.681 5.681 14 C 0.097 3.903 15 C -0.115 4.115 16 C 0.145 3.855 17 N -0.590 5.590 18 C -0.253 4.253 19 H 0.063 0.937 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.177 3.823 27 C -0.141 4.141 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.335 0.665 43 H 0.036 0.964 44 H 0.062 0.938 45 H 0.045 0.955 46 H 0.013 0.987 47 H 0.053 0.947 48 H 0.254 0.746 49 H 0.016 0.984 50 H 0.081 0.919 51 H 0.043 0.957 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.459 3.627 -18.453 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C -0.024 4.024 4 H 0.095 0.905 5 C -0.134 4.134 6 C -0.113 4.113 7 C -0.072 4.072 8 C -0.135 4.135 9 C -0.138 4.138 10 C -0.151 4.151 11 C -0.139 4.139 12 C -0.140 4.140 13 N -0.311 5.311 14 C -0.012 4.012 15 C -0.155 4.155 16 C 0.018 3.982 17 N -0.313 5.313 18 C -0.383 4.383 19 H 0.081 0.919 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.050 3.950 27 C -0.180 4.180 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.153 0.847 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.031 0.969 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.034 0.966 50 H 0.099 0.901 51 H 0.062 0.938 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.292 4.196 -18.368 23.648 hybrid contribution 0.611 -0.732 0.440 1.050 sum -13.681 3.464 -17.928 22.816 Atomic orbital electron populations 1.21756 0.95727 1.01380 1.01779 1.22261 0.96599 0.98477 1.01987 1.21676 0.88868 0.93971 0.97854 0.90522 1.21548 1.00142 0.94560 0.97155 1.20572 1.03438 0.94587 0.92735 1.20130 0.93691 0.97078 0.96350 1.21139 0.99640 0.99641 0.93044 1.21154 0.96655 0.98413 0.97599 1.21093 0.94352 1.00732 0.98892 1.21119 0.99378 0.99768 0.93656 1.21089 0.96447 0.98804 0.97638 1.60726 1.07299 1.51475 1.11614 1.21444 0.96314 0.96866 0.86543 1.21995 0.99784 0.95635 0.98047 1.20931 0.88863 0.96033 0.92410 1.43996 1.09726 1.16488 1.61088 1.19117 1.02507 0.91843 1.24837 0.91911 1.25085 1.00024 0.96730 0.97638 1.70041 1.34799 1.07208 1.42586 0.86400 0.84458 0.77842 0.78252 1.20861 1.21688 1.20985 1.20653 1.01199 0.86646 0.86497 1.22393 0.95792 0.98204 1.01659 0.92580 0.92717 0.93109 0.91914 0.92068 0.92130 0.92066 0.91605 0.89280 0.85936 0.86356 0.86529 0.86443 0.86297 0.84696 0.94640 0.91885 0.93682 0.96942 0.92835 0.93648 0.96632 0.90075 0.93802 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.60 37.16 0.36 -1.02 16 2 C -0.15 -1.63 5.36 -26.73 -0.14 -1.78 16 3 C 0.09 0.99 1.85 -67.71 -0.13 0.86 16 4 H 0.08 0.96 7.21 -51.93 -0.37 0.59 16 5 C -0.10 -0.98 4.75 -26.73 -0.13 -1.10 16 6 C -0.08 -0.82 5.23 -27.88 -0.15 -0.97 16 7 C -0.07 -0.77 5.13 -104.63 -0.54 -1.31 16 8 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 9 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 10 C -0.13 -1.19 10.05 -39.59 -0.40 -1.59 16 11 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 12 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 13 N -0.68 -9.06 5.51 -99.69 -0.55 -9.61 16 14 C 0.10 1.60 2.24 -67.67 -0.15 1.45 16 15 C -0.11 -2.04 5.58 -26.61 -0.15 -2.18 16 16 C 0.14 3.09 6.52 -3.71 -0.02 3.06 16 17 N -0.59 -14.92 2.98 -172.32 -0.51 -15.44 16 18 C -0.25 -7.04 9.55 -15.06 -0.14 -7.18 16 19 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 20 C 0.00 0.11 4.87 -17.43 -0.08 0.03 16 21 N -0.90 -26.42 11.43 55.49 0.63 -25.79 16 22 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.18 4.21 5.29 -3.71 -0.02 4.19 16 27 C -0.14 -2.64 5.35 -26.61 -0.14 -2.79 16 28 H 0.06 0.48 6.69 -51.93 -0.35 0.13 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.76 7.39 -51.93 -0.38 0.38 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.58 6.48 -51.93 -0.34 0.25 16 35 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.09 1.10 7.69 -51.93 -0.40 0.70 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.33 4.27 8.06 -39.29 -0.32 3.95 16 43 H 0.04 0.62 7.11 -51.93 -0.37 0.25 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.04 0.71 7.52 -51.93 -0.39 0.32 16 46 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 2.16 6.28 -51.93 -0.33 1.84 16 51 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 52 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 401.88 15.07 6.06 6.06 Total: -1.00 -29.19 401.88 -12.34 -41.53 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -9.54 Total: 2.99 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -3.40 Total: -16.57 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.43 Total: -50.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.19 -12.34 -41.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599026771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.331 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds