Wall clock time and date at job start Tue Mar 31 2020 11:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47032 * 2 1 4 4 H 1.08998 * 109.47020 * 53.62373 * 3 2 1 5 5 C 1.52999 * 109.46773 * 293.62426 * 3 2 1 6 6 C 1.53000 * 109.46712 * 175.00119 * 5 3 2 7 7 C 1.50698 * 109.47359 * 180.02562 * 6 5 3 8 8 C 1.38234 * 119.99702 * 269.72861 * 7 6 5 9 9 C 1.38240 * 119.99629 * 179.76264 * 8 7 6 10 10 C 1.38228 * 119.99939 * 0.50869 * 9 8 7 11 11 C 1.38229 * 120.00351 * 359.74543 * 10 9 8 12 12 C 1.38236 * 119.99994 * 89.99707 * 7 6 5 13 13 N 1.46894 * 109.46821 * 173.62576 * 3 2 1 14 14 C 1.46904 * 111.00102 * 274.89697 * 13 3 2 15 15 C 1.53042 * 109.45980 * 273.65542 * 14 13 3 16 16 C 1.53198 * 109.31491 * 178.59959 * 15 14 13 17 17 N 1.46927 * 108.76108 * 54.65178 * 16 15 14 18 18 C 1.36939 * 120.62620 * 126.36527 * 17 16 15 19 19 H 1.07998 * 120.00161 * 329.55502 * 18 17 16 20 20 C 1.38811 * 119.99840 * 149.55239 * 18 17 16 21 21 N 1.31616 * 119.99811 * 342.26147 * 20 18 17 22 22 Si 1.86803 * 120.00050 * 162.26667 * 20 18 17 23 23 H 1.48495 * 109.47227 * 59.99458 * 22 20 18 24 24 H 1.48498 * 109.47215 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46895 * 299.99710 * 22 20 18 26 26 C 1.46921 * 118.74334 * 306.38224 * 17 16 15 27 27 C 1.53039 * 109.46317 * 153.60151 * 14 13 3 28 28 H 1.09003 * 109.47187 * 64.00261 * 1 2 3 29 29 H 1.09006 * 109.47334 * 304.00074 * 1 2 3 30 30 H 1.09005 * 109.47595 * 184.00209 * 1 2 3 31 31 H 1.08999 * 109.47048 * 119.99855 * 2 1 3 32 32 H 1.09001 * 109.47218 * 239.99954 * 2 1 3 33 33 H 1.09000 * 109.47309 * 294.99777 * 5 3 2 34 34 H 1.09001 * 109.47093 * 55.00547 * 5 3 2 35 35 H 1.08998 * 109.47233 * 300.00339 * 6 5 3 36 36 H 1.08999 * 109.47419 * 60.00055 * 6 5 3 37 37 H 1.07998 * 120.00537 * 359.97438 * 8 7 6 38 38 H 1.08002 * 119.99711 * 180.22785 * 9 8 7 39 39 H 1.08010 * 119.99582 * 179.72711 * 10 9 8 40 40 H 1.07997 * 120.00143 * 179.97438 * 11 10 9 41 41 H 1.07996 * 120.00046 * 0.02562 * 12 7 6 42 42 H 1.00903 * 111.00700 * 38.84782 * 13 3 2 43 43 H 1.09004 * 109.45946 * 33.62087 * 14 13 3 44 44 H 1.09002 * 109.49744 * 298.56714 * 15 14 13 45 45 H 1.09000 * 109.50014 * 58.66145 * 15 14 13 46 46 H 1.08998 * 109.59343 * 294.86414 * 16 15 14 47 47 H 1.09000 * 109.70030 * 174.50338 * 16 15 14 48 48 H 0.97010 * 119.99837 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.58657 * 293.83069 * 26 17 16 50 50 H 1.08997 * 109.70276 * 173.46646 * 26 17 16 51 51 H 1.09002 * 109.49279 * 301.33425 * 27 14 13 52 52 H 1.08992 * 109.50001 * 61.39713 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5864 1.9882 0.8274 5 6 1.6649 2.1160 -1.3216 6 6 2.0639 3.5922 -1.2729 7 6 1.6940 4.2558 -2.5744 8 6 2.6023 4.2890 -3.6159 9 6 2.2612 4.8935 -4.8114 10 6 1.0157 5.4738 -4.9618 11 6 0.1093 5.4453 -3.9185 12 6 0.4484 4.8362 -2.7247 13 7 3.5008 1.4454 0.1538 14 6 3.8812 1.3799 1.5712 15 6 3.9143 2.7938 2.1560 16 6 4.2770 2.7190 3.6425 17 7 5.5376 1.9777 3.7846 18 6 6.5931 2.5208 4.4674 19 1 6.7330 3.5916 4.4826 20 6 7.4832 1.6950 5.1402 21 7 7.1448 0.4551 5.4237 22 14 9.1612 2.3435 5.6433 23 1 8.9907 3.5044 6.5535 24 1 9.9162 1.2732 6.3430 25 1 9.9105 2.7688 4.4338 26 6 5.6444 0.6430 3.1799 27 6 5.2660 0.7412 1.6986 28 1 -0.3634 0.4505 -0.9237 29 1 -0.3634 0.5747 0.8520 30 1 -0.3634 -1.0252 0.0717 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.1892 1.6248 -2.1413 34 1 0.5892 2.0353 -1.4781 35 1 1.5397 4.0834 -0.4532 36 1 3.1396 3.6730 -1.1164 37 1 3.5772 3.8398 -3.4968 38 1 2.9695 4.9162 -5.6264 39 1 0.7508 5.9499 -5.8944 40 1 -0.8636 5.8991 -4.0359 41 1 -0.2595 4.8144 -1.9094 42 1 3.9210 0.6911 -0.3684 43 1 3.1525 0.7790 2.1153 44 1 4.6604 3.3882 1.6287 45 1 2.9340 3.2570 2.0438 46 1 3.4860 2.2025 4.1862 47 1 4.3980 3.7258 4.0424 48 1 7.7667 -0.1220 5.8942 49 1 4.9648 -0.0428 3.6859 50 1 6.6674 0.2785 3.2723 51 1 5.2479 -0.2569 1.2609 52 1 5.9992 1.3547 1.1752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599026771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:26 Heat of formation + Delta-G solvation = 5.326975 kcal Electronic energy + Delta-G solvation = -26695.169324 eV Core-core repulsion = 23272.032355 eV Total energy + Delta-G solvation = -3423.136969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.30161 -39.75309 -37.99683 -35.29515 -34.09113 -33.12493 -31.68668 -31.62800 -30.88866 -29.81173 -26.94017 -25.69378 -24.04536 -23.87878 -23.37080 -23.02715 -21.68193 -21.09376 -20.67438 -18.69368 -17.54551 -16.97498 -16.56101 -16.31938 -16.01479 -15.83833 -15.63811 -15.42607 -15.32095 -14.82731 -14.63813 -14.43553 -14.16591 -14.01651 -13.92596 -13.67271 -13.40453 -13.18303 -13.06979 -12.91230 -12.68236 -12.57884 -12.45480 -12.35714 -12.24750 -12.07078 -11.97940 -11.87813 -11.81960 -11.59659 -11.44897 -11.37981 -11.14838 -11.03450 -10.54014 -9.74708 -9.52956 -9.15152 -8.65963 -7.88762 -5.35384 0.54533 0.57363 1.46053 1.48565 1.55527 2.51002 2.96220 3.19750 3.31483 3.70252 3.78498 3.98667 4.05464 4.09237 4.13722 4.19234 4.24973 4.34909 4.38340 4.44085 4.48670 4.56295 4.62552 4.69931 4.71188 4.72825 4.76982 4.80621 4.88887 4.94270 4.97295 5.04269 5.06961 5.14198 5.14590 5.19917 5.26278 5.27753 5.29419 5.37574 5.41500 5.45700 5.51402 5.53794 5.65254 5.66618 5.69731 5.73423 5.87948 6.22027 6.26854 6.39799 6.61658 7.14825 7.85630 8.39184 9.17675 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.002709 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.766173 B =10335.056555 C =11378.984021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.150 4.150 3 C 0.090 3.910 4 H 0.068 0.932 5 C -0.085 4.085 6 C -0.069 4.069 7 C -0.086 4.086 8 C -0.133 4.133 9 C -0.129 4.129 10 C -0.138 4.138 11 C -0.127 4.127 12 C -0.132 4.132 13 N -0.676 5.676 14 C 0.111 3.889 15 C -0.100 4.100 16 C 0.141 3.859 17 N -0.609 5.609 18 C -0.267 4.267 19 H 0.063 0.937 20 C -0.048 4.048 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.278 1.278 26 C 0.183 3.817 27 C -0.126 4.126 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.129 0.871 42 H 0.342 0.658 43 H 0.030 0.970 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.009 0.991 47 H 0.051 0.949 48 H 0.250 0.750 49 H -0.006 1.006 50 H 0.047 0.953 51 H 0.065 0.935 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.709 4.477 -20.456 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C -0.020 4.020 4 H 0.086 0.914 5 C -0.123 4.123 6 C -0.107 4.107 7 C -0.086 4.086 8 C -0.151 4.151 9 C -0.146 4.146 10 C -0.156 4.156 11 C -0.145 4.145 12 C -0.150 4.150 13 N -0.306 5.306 14 C 0.001 3.999 15 C -0.140 4.140 16 C 0.015 3.985 17 N -0.332 5.332 18 C -0.397 4.397 19 H 0.080 0.920 20 C -0.243 4.243 21 N -0.580 5.580 22 Si 0.794 3.206 23 H -0.200 1.200 24 H -0.219 1.219 25 H -0.204 1.204 26 C 0.056 3.944 27 C -0.165 4.165 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.147 0.853 42 H 0.161 0.839 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.027 0.973 47 H 0.070 0.930 48 H 0.059 0.941 49 H 0.012 0.988 50 H 0.065 0.935 51 H 0.084 0.916 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.566 5.061 -20.396 26.151 hybrid contribution 0.930 -0.966 1.039 1.697 sum -14.636 4.094 -19.356 24.610 Atomic orbital electron populations 1.21737 0.94532 1.01874 1.02245 1.22201 0.97640 0.97540 1.01557 1.21692 0.87292 0.94677 0.98305 0.91363 1.21451 1.00792 0.93948 0.96121 1.20461 1.02160 0.95025 0.93015 1.20168 0.94315 0.97867 0.96257 1.21273 0.99793 1.00390 0.93680 1.21418 0.97393 0.98116 0.97718 1.21425 0.94050 1.00305 0.99802 1.21433 1.00365 0.99338 0.93320 1.21292 0.96402 0.98875 0.98463 1.60637 1.08887 1.51850 1.09244 1.21149 0.94669 0.95583 0.88487 1.21790 1.00576 0.96503 0.95091 1.21069 0.87199 0.95267 0.94966 1.44271 1.10672 1.17012 1.61291 1.19437 1.03505 0.92060 1.24692 0.91976 1.25847 1.03357 0.97037 0.98103 1.70189 1.35750 1.08366 1.43655 0.85368 0.80069 0.77227 0.77956 1.20031 1.21887 1.20400 1.20470 0.98707 0.85718 0.89457 1.22149 0.96973 0.99666 0.97731 0.91485 0.92965 0.92562 0.93554 0.91266 0.92150 0.90854 0.91783 0.91072 0.86047 0.84789 0.84391 0.84384 0.85270 0.83924 0.95238 0.92877 0.91286 0.97347 0.93029 0.94064 0.98820 0.93456 0.91614 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.60 71.98 0.69 -1.70 16 2 C -0.15 -2.90 5.36 30.60 0.16 -2.74 16 3 C 0.09 1.89 1.85 44.92 0.08 1.97 16 4 H 0.07 1.58 7.21 -2.39 -0.02 1.57 16 5 C -0.09 -1.56 4.75 30.59 0.15 -1.42 16 6 C -0.07 -1.40 5.23 29.85 0.16 -1.25 16 7 C -0.09 -1.72 5.13 -19.87 -0.10 -1.83 16 8 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 9 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 10 C -0.14 -2.16 10.05 22.27 0.22 -1.94 16 11 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 12 C -0.13 -2.38 9.70 22.27 0.22 -2.17 16 13 N -0.68 -16.94 5.51 -469.32 -2.59 -19.53 16 14 C 0.11 3.56 2.24 44.94 0.10 3.66 16 15 C -0.10 -3.47 5.58 30.67 0.17 -3.29 16 16 C 0.14 6.06 6.52 86.36 0.56 6.62 16 17 N -0.61 -31.46 2.98 -699.09 -2.08 -33.54 16 18 C -0.27 -15.08 9.55 84.03 0.80 -14.28 16 19 H 0.06 3.45 7.89 -2.91 -0.02 3.42 16 20 C -0.05 -2.72 4.87 84.86 0.41 -2.31 16 21 N -0.93 -56.26 11.43 21.65 0.25 -56.01 16 22 Si 0.97 45.58 29.59 68.60 2.03 47.61 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 26 C 0.18 8.97 5.29 86.37 0.46 9.42 16 27 C -0.13 -4.70 5.35 30.67 0.16 -4.53 16 28 H 0.07 0.95 6.69 -2.39 -0.02 0.94 16 29 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 1.06 7.39 -2.39 -0.02 1.04 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.20 6.48 -2.39 -0.02 1.19 16 35 H 0.06 1.30 8.08 -2.39 -0.02 1.28 16 36 H 0.07 1.70 7.69 -2.39 -0.02 1.68 16 37 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.13 1.78 8.06 -2.91 -0.02 1.75 16 39 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 42 H 0.34 8.06 8.06 -89.69 -0.72 7.34 16 43 H 0.03 1.01 7.11 -2.38 -0.02 0.99 16 44 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.07 2.07 7.52 -2.39 -0.02 2.06 16 46 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 48 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 49 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 50 H 0.05 2.62 6.28 -2.39 -0.01 2.60 16 51 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 52 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -63.75 401.88 2.66 -61.09 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.14 Total: 22.39 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 4.91 Total: -22.01 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -4.42 Total: -109.09 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -63.75 2.66 -61.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599026771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.419 kcal (2) G-P(sol) polarization free energy of solvation -63.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds