Wall clock time and date at job start Tue Mar 31 2020 11:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46512 * 2 1 4 4 H 1.09005 * 109.46527 * 174.80256 * 3 2 1 5 5 N 1.46897 * 109.47277 * 294.79856 * 3 2 1 6 6 C 1.46896 * 111.00368 * 273.30807 * 5 3 2 7 7 C 1.53043 * 109.45622 * 274.34108 * 6 5 3 8 8 C 1.53194 * 109.31269 * 178.61243 * 7 6 5 9 9 N 1.46929 * 108.77529 * 54.63594 * 8 7 6 10 10 C 1.36931 * 120.63156 * 126.36965 * 9 8 7 11 11 H 1.08003 * 120.00418 * 328.57009 * 10 9 8 12 12 C 1.38822 * 119.99852 * 148.56717 * 10 9 8 13 13 N 1.31612 * 119.99922 * 345.76318 * 12 10 9 14 14 Si 1.86799 * 119.99823 * 165.75821 * 12 10 9 15 15 H 1.48504 * 109.47287 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46831 * 120.00165 * 14 12 10 17 17 H 1.48495 * 109.47141 * 240.00382 * 14 12 10 18 18 C 1.46925 * 118.73549 * 306.39223 * 9 8 7 19 19 C 1.53036 * 109.46217 * 154.27221 * 6 5 3 20 20 C 1.50701 * 109.47096 * 54.80255 * 3 2 1 21 21 C 1.38250 * 119.99953 * 264.99815 * 20 3 2 22 22 C 1.38216 * 120.00120 * 180.25902 * 21 20 3 23 23 C 1.50701 * 120.00074 * 179.72028 * 22 21 20 24 24 C 1.38263 * 119.99465 * 359.52637 * 22 21 20 25 25 C 1.38207 * 120.00228 * 0.40905 * 24 22 21 26 26 C 1.38214 * 119.99904 * 84.97434 * 20 3 2 27 27 C 1.50698 * 119.99987 * 359.97438 * 26 20 3 28 28 H 1.08991 * 109.47395 * 62.71234 * 1 2 3 29 29 H 1.09001 * 109.46488 * 182.70953 * 1 2 3 30 30 H 1.08994 * 109.46928 * 302.70322 * 1 2 3 31 31 H 1.08997 * 109.46688 * 240.00737 * 2 1 3 32 32 H 1.08995 * 109.47461 * 119.99757 * 2 1 3 33 33 H 1.00907 * 111.00079 * 37.25980 * 5 3 2 34 34 H 1.09001 * 109.46358 * 34.29221 * 6 5 3 35 35 H 1.08995 * 109.50067 * 298.56314 * 7 6 5 36 36 H 1.09004 * 109.50187 * 58.66419 * 7 6 5 37 37 H 1.08994 * 109.58633 * 294.84671 * 8 7 6 38 38 H 1.08998 * 109.70326 * 174.49066 * 8 7 6 39 39 H 0.97004 * 119.99826 * 179.97438 * 13 12 10 40 40 H 1.09004 * 109.58870 * 293.82080 * 18 9 8 41 41 H 1.09001 * 109.70388 * 173.46992 * 18 9 8 42 42 H 1.08991 * 109.49724 * 301.33290 * 19 6 5 43 43 H 1.09005 * 109.49582 * 61.40455 * 19 6 5 44 44 H 1.07998 * 119.99874 * 359.97438 * 21 20 3 45 45 H 1.09006 * 109.46821 * 90.00026 * 23 22 21 46 46 H 1.08997 * 109.46673 * 209.99487 * 23 22 21 47 47 H 1.09000 * 109.47286 * 329.99781 * 23 22 21 48 48 H 1.07999 * 119.99669 * 180.23206 * 24 22 21 49 49 H 1.07994 * 120.00064 * 179.83413 * 25 24 22 50 50 H 1.09001 * 109.47334 * 89.99654 * 27 26 20 51 51 H 1.08998 * 109.46998 * 209.99937 * 27 26 20 52 52 H 1.09003 * 109.47429 * 329.99799 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1260 1.4440 0.0931 5 7 1.6554 2.0979 -1.2572 6 6 2.6541 1.8520 -2.3060 7 6 3.7716 2.8923 -2.1999 8 6 4.8284 2.6119 -3.2729 9 7 4.1693 2.5660 -4.5853 10 6 4.6139 3.3488 -5.6170 11 1 5.0560 4.3127 -5.4120 12 6 4.4965 2.9036 -6.9266 13 7 4.2255 1.6388 -7.1699 14 14 4.7230 4.0995 -8.3436 15 1 5.0184 5.4524 -7.8071 16 1 5.8519 3.6484 -9.1964 17 1 3.4794 4.1485 -9.1536 18 6 3.0238 1.6645 -4.7693 19 6 1.9872 1.9555 -3.6795 20 6 1.4352 2.1891 1.1611 21 6 0.2905 2.9425 0.9777 22 6 -0.2611 3.6315 2.0413 23 6 -1.5053 4.4577 1.8400 24 6 0.3263 3.5594 3.2909 25 6 1.4698 2.8052 3.4745 26 6 2.0246 2.1203 2.4093 27 6 3.2717 1.2982 2.6094 28 1 -0.3634 0.4711 -0.9132 29 1 -0.3632 -1.0266 0.0486 30 1 -0.3633 0.5552 0.8647 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 0.7382 1.8002 -1.5544 34 1 3.0743 0.8540 -2.1806 35 1 3.3564 3.8888 -2.3500 36 1 4.2307 2.8337 -1.2130 37 1 5.3085 1.6543 -3.0714 38 1 5.5769 3.4042 -3.2674 39 1 4.1430 1.3278 -8.0850 40 1 3.3568 0.6296 -4.6899 41 1 2.5791 1.8309 -5.7505 42 1 1.1763 1.2302 -3.7458 43 1 1.5883 2.9608 -3.8154 44 1 -0.1700 2.9963 0.0023 45 1 -2.3849 3.8397 2.0202 46 1 -1.5013 5.2959 2.5367 47 1 -1.5294 4.8350 0.8177 48 1 -0.1069 4.0947 4.1229 49 1 1.9301 2.7511 4.4499 50 1 4.1491 1.9196 2.4304 51 1 3.2970 0.9193 3.6311 52 1 3.2709 0.4610 1.9113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599027273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:26 Heat of formation + Delta-G solvation = 25.499149 kcal Electronic energy + Delta-G solvation = -27501.579858 eV Core-core repulsion = 24079.317620 eV Total energy + Delta-G solvation = -3422.262237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.14675 -38.12072 -36.24187 -33.96752 -33.14098 -31.29209 -30.64306 -29.87931 -29.38101 -28.69795 -26.12259 -24.83870 -24.44679 -22.56532 -22.15852 -21.83598 -20.68597 -19.29529 -18.97174 -16.79860 -16.06571 -15.95762 -15.33946 -15.16029 -14.82939 -14.47664 -14.06430 -13.86184 -13.68224 -13.56867 -13.44985 -13.35765 -13.13144 -12.95460 -12.82572 -12.65793 -12.26095 -12.10175 -11.99543 -11.69889 -11.60037 -11.35058 -11.28342 -11.10137 -10.99401 -10.86594 -10.72111 -10.69703 -10.48201 -10.26667 -10.15032 -9.91520 -9.56121 -9.40665 -8.65611 -8.45888 -8.37882 -8.09954 -6.58465 -5.76298 -3.21858 1.35831 1.46873 3.38516 3.46319 3.49014 3.73021 4.34115 4.52092 4.72911 4.81046 4.84540 4.96867 5.01250 5.07645 5.12462 5.19156 5.39334 5.44891 5.47350 5.48364 5.50836 5.55860 5.58292 5.60985 5.66656 5.74570 5.78481 5.81365 5.83777 5.90917 5.98196 6.04188 6.12900 6.17585 6.21863 6.23755 6.38880 6.43876 6.55122 6.59358 6.63067 6.68360 6.70573 6.77874 6.88125 7.06844 7.10322 7.39258 7.43017 7.65199 7.69483 7.83652 8.50709 9.25430 9.87827 10.46847 11.32354 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.002986 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.481361 B = 9375.743574 C = 9579.961275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.150 4.150 3 C 0.124 3.876 4 H 0.087 0.913 5 N -0.680 5.680 6 C 0.098 3.902 7 C -0.116 4.116 8 C 0.145 3.855 9 N -0.591 5.591 10 C -0.251 4.251 11 H 0.064 0.936 12 C 0.003 3.997 13 N -0.904 5.904 14 Si 0.902 3.098 15 H -0.277 1.277 16 H -0.290 1.290 17 H -0.289 1.289 18 C 0.177 3.823 19 C -0.141 4.141 20 C -0.054 4.054 21 C -0.089 4.089 22 C -0.098 4.098 23 C -0.112 4.112 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.092 4.092 27 C -0.118 4.118 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.336 0.664 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.013 0.987 38 H 0.053 0.947 39 H 0.252 0.748 40 H 0.016 0.984 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.062 0.938 44 H 0.126 0.874 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.069 0.931 51 H 0.062 0.938 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.172 -1.280 20.728 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.189 4.189 3 C 0.013 3.987 4 H 0.105 0.895 5 N -0.312 5.312 6 C -0.011 4.011 7 C -0.156 4.156 8 C 0.018 3.982 9 N -0.314 5.314 10 C -0.381 4.381 11 H 0.082 0.918 12 C -0.195 4.195 13 N -0.548 5.548 14 Si 0.732 3.268 15 H -0.202 1.202 16 H -0.217 1.217 17 H -0.216 1.216 18 C 0.051 3.949 19 C -0.181 4.181 20 C -0.055 4.055 21 C -0.107 4.107 22 C -0.098 4.098 23 C -0.169 4.169 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.092 4.092 27 C -0.175 4.175 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.156 0.844 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.143 0.857 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.909 -0.738 20.715 22.562 hybrid contribution -0.074 -0.397 -0.926 1.010 sum -8.983 -1.136 19.789 21.763 Atomic orbital electron populations 1.21818 0.95594 1.01519 1.02124 1.22166 0.96888 0.97430 1.02397 1.20494 0.99391 0.90158 0.88642 0.89475 1.60745 1.05699 1.61427 1.03292 1.21456 0.92402 0.96992 0.90235 1.22002 0.96353 0.99200 0.97995 1.20932 0.93123 0.97990 0.86151 1.44002 1.31640 1.48352 1.07384 1.19217 1.36584 0.96918 0.85350 0.91846 1.25139 1.00926 0.95419 0.98039 1.70019 1.53013 1.12901 1.18903 0.86229 0.77344 0.80716 0.82536 1.20200 1.21732 1.21584 1.20671 0.86068 0.91959 0.96251 1.22403 0.99025 1.01138 0.95502 1.19629 0.95063 0.97449 0.93341 1.20852 0.95462 0.96088 0.98285 1.19899 0.97523 0.98756 0.93622 1.20759 0.94909 0.98657 1.02573 1.20910 0.96584 1.00346 0.96605 1.20879 0.96526 0.98236 0.98215 1.19682 0.97381 0.99070 0.93094 1.20855 0.95234 0.99254 1.02138 0.92689 0.92919 0.92048 0.91469 0.91545 0.84366 0.94561 0.91841 0.93706 0.96887 0.92813 0.93747 0.96620 0.89800 0.93784 0.91890 0.85651 0.91597 0.91926 0.91467 0.86720 0.86582 0.91188 0.91880 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.11 37.16 0.34 -1.23 16 2 C -0.15 -1.66 5.63 -26.72 -0.15 -1.81 16 3 C 0.12 1.53 1.66 -68.86 -0.11 1.42 16 4 H 0.09 1.16 6.01 -51.93 -0.31 0.85 16 5 N -0.68 -9.57 5.02 -100.91 -0.51 -10.08 16 6 C 0.10 1.65 2.25 -67.67 -0.15 1.50 16 7 C -0.12 -2.11 5.58 -26.61 -0.15 -2.26 16 8 C 0.14 3.12 6.52 -3.71 -0.02 3.10 16 9 N -0.59 -15.00 2.98 -172.32 -0.51 -15.51 16 10 C -0.25 -6.98 9.56 -15.06 -0.14 -7.12 16 11 H 0.06 1.75 7.87 -52.48 -0.41 1.34 16 12 C 0.00 0.09 4.96 -17.43 -0.09 0.01 16 13 N -0.90 -26.39 11.28 55.49 0.63 -25.76 16 14 Si 0.90 21.86 29.58 -169.99 -5.03 16.84 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 C 0.18 4.22 5.26 -3.71 -0.02 4.20 16 19 C -0.14 -2.67 5.35 -26.61 -0.14 -2.81 16 20 C -0.05 -0.66 4.14 -104.63 -0.43 -1.09 16 21 C -0.09 -1.07 7.49 -39.58 -0.30 -1.37 16 22 C -0.10 -1.08 5.88 -104.62 -0.62 -1.70 16 23 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 24 C -0.13 -1.33 9.70 -39.58 -0.38 -1.71 16 25 C -0.12 -1.28 9.70 -39.59 -0.38 -1.66 16 26 C -0.09 -1.04 5.88 -104.62 -0.62 -1.66 16 27 C -0.12 -1.12 9.22 36.00 0.33 -0.79 16 28 H 0.05 0.57 6.53 -51.93 -0.34 0.23 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.65 6.17 -51.93 -0.32 0.33 16 31 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 32 H 0.07 0.68 6.81 -51.93 -0.35 0.32 16 33 H 0.34 4.45 5.69 -39.29 -0.22 4.23 16 34 H 0.04 0.63 7.23 -51.93 -0.38 0.26 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.04 0.74 7.49 -51.93 -0.39 0.36 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 2.24 6.24 -51.93 -0.32 1.92 16 42 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.13 1.52 6.94 -52.49 -0.36 1.15 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 47 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 48 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 52 H 0.07 0.64 5.38 -51.93 -0.28 0.36 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -29.47 389.67 -11.35 -40.82 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -9.12 Total: 3.44 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.68 Total: -15.62 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.39 Total: -51.35 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.47 -11.35 -40.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599027273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.318 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds