Wall clock time and date at job start Tue Mar 31 2020 11:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46512 * 2 1 4 4 H 1.09005 * 109.46527 * 174.80256 * 3 2 1 5 5 N 1.46897 * 109.47277 * 294.79856 * 3 2 1 6 6 C 1.46896 * 111.00368 * 273.30807 * 5 3 2 7 7 C 1.53043 * 109.45622 * 274.34108 * 6 5 3 8 8 C 1.53194 * 109.31269 * 178.61243 * 7 6 5 9 9 N 1.46929 * 108.77529 * 54.63594 * 8 7 6 10 10 C 1.36931 * 120.63156 * 126.36965 * 9 8 7 11 11 H 1.08003 * 120.00418 * 328.57009 * 10 9 8 12 12 C 1.38822 * 119.99852 * 148.56717 * 10 9 8 13 13 N 1.31612 * 119.99922 * 345.76318 * 12 10 9 14 14 Si 1.86799 * 119.99823 * 165.75821 * 12 10 9 15 15 H 1.48504 * 109.47287 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46831 * 120.00165 * 14 12 10 17 17 H 1.48495 * 109.47141 * 240.00382 * 14 12 10 18 18 C 1.46925 * 118.73549 * 306.39223 * 9 8 7 19 19 C 1.53036 * 109.46217 * 154.27221 * 6 5 3 20 20 C 1.50701 * 109.47096 * 54.80255 * 3 2 1 21 21 C 1.38250 * 119.99953 * 264.99815 * 20 3 2 22 22 C 1.38216 * 120.00120 * 180.25902 * 21 20 3 23 23 C 1.50701 * 120.00074 * 179.72028 * 22 21 20 24 24 C 1.38263 * 119.99465 * 359.52637 * 22 21 20 25 25 C 1.38207 * 120.00228 * 0.40905 * 24 22 21 26 26 C 1.38214 * 119.99904 * 84.97434 * 20 3 2 27 27 C 1.50698 * 119.99987 * 359.97438 * 26 20 3 28 28 H 1.08991 * 109.47395 * 62.71234 * 1 2 3 29 29 H 1.09001 * 109.46488 * 182.70953 * 1 2 3 30 30 H 1.08994 * 109.46928 * 302.70322 * 1 2 3 31 31 H 1.08997 * 109.46688 * 240.00737 * 2 1 3 32 32 H 1.08995 * 109.47461 * 119.99757 * 2 1 3 33 33 H 1.00907 * 111.00079 * 37.25980 * 5 3 2 34 34 H 1.09001 * 109.46358 * 34.29221 * 6 5 3 35 35 H 1.08995 * 109.50067 * 298.56314 * 7 6 5 36 36 H 1.09004 * 109.50187 * 58.66419 * 7 6 5 37 37 H 1.08994 * 109.58633 * 294.84671 * 8 7 6 38 38 H 1.08998 * 109.70326 * 174.49066 * 8 7 6 39 39 H 0.97004 * 119.99826 * 179.97438 * 13 12 10 40 40 H 1.09004 * 109.58870 * 293.82080 * 18 9 8 41 41 H 1.09001 * 109.70388 * 173.46992 * 18 9 8 42 42 H 1.08991 * 109.49724 * 301.33290 * 19 6 5 43 43 H 1.09005 * 109.49582 * 61.40455 * 19 6 5 44 44 H 1.07998 * 119.99874 * 359.97438 * 21 20 3 45 45 H 1.09006 * 109.46821 * 90.00026 * 23 22 21 46 46 H 1.08997 * 109.46673 * 209.99487 * 23 22 21 47 47 H 1.09000 * 109.47286 * 329.99781 * 23 22 21 48 48 H 1.07999 * 119.99669 * 180.23206 * 24 22 21 49 49 H 1.07994 * 120.00064 * 179.83413 * 25 24 22 50 50 H 1.09001 * 109.47334 * 89.99654 * 27 26 20 51 51 H 1.08998 * 109.46998 * 209.99937 * 27 26 20 52 52 H 1.09003 * 109.47429 * 329.99799 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1260 1.4440 0.0931 5 7 1.6554 2.0979 -1.2572 6 6 2.6541 1.8520 -2.3060 7 6 3.7716 2.8923 -2.1999 8 6 4.8284 2.6119 -3.2729 9 7 4.1693 2.5660 -4.5853 10 6 4.6139 3.3488 -5.6170 11 1 5.0560 4.3127 -5.4120 12 6 4.4965 2.9036 -6.9266 13 7 4.2255 1.6388 -7.1699 14 14 4.7230 4.0995 -8.3436 15 1 5.0184 5.4524 -7.8071 16 1 5.8519 3.6484 -9.1964 17 1 3.4794 4.1485 -9.1536 18 6 3.0238 1.6645 -4.7693 19 6 1.9872 1.9555 -3.6795 20 6 1.4352 2.1891 1.1611 21 6 0.2905 2.9425 0.9777 22 6 -0.2611 3.6315 2.0413 23 6 -1.5053 4.4577 1.8400 24 6 0.3263 3.5594 3.2909 25 6 1.4698 2.8052 3.4745 26 6 2.0246 2.1203 2.4093 27 6 3.2717 1.2982 2.6094 28 1 -0.3634 0.4711 -0.9132 29 1 -0.3632 -1.0266 0.0486 30 1 -0.3633 0.5552 0.8647 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 0.7382 1.8002 -1.5544 34 1 3.0743 0.8540 -2.1806 35 1 3.3564 3.8888 -2.3500 36 1 4.2307 2.8337 -1.2130 37 1 5.3085 1.6543 -3.0714 38 1 5.5769 3.4042 -3.2674 39 1 4.1430 1.3278 -8.0850 40 1 3.3568 0.6296 -4.6899 41 1 2.5791 1.8309 -5.7505 42 1 1.1763 1.2302 -3.7458 43 1 1.5883 2.9608 -3.8154 44 1 -0.1700 2.9963 0.0023 45 1 -2.3849 3.8397 2.0202 46 1 -1.5013 5.2959 2.5367 47 1 -1.5294 4.8350 0.8177 48 1 -0.1069 4.0947 4.1229 49 1 1.9301 2.7511 4.4499 50 1 4.1491 1.9196 2.4304 51 1 3.2970 0.9193 3.6311 52 1 3.2709 0.4610 1.9113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599027273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:25 Heat of formation + Delta-G solvation = 11.626049 kcal Electronic energy + Delta-G solvation = -27502.181440 eV Core-core repulsion = 24079.317620 eV Total energy + Delta-G solvation = -3422.863820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05565 -39.51702 -37.56244 -35.17824 -34.40148 -32.96537 -31.66668 -31.40033 -30.37291 -29.98140 -27.29419 -26.20483 -25.56985 -23.83685 -23.50546 -23.23556 -21.82033 -20.64888 -20.18661 -18.71896 -17.17377 -16.91391 -16.76627 -16.27088 -16.09445 -15.71332 -15.31957 -15.31534 -14.92596 -14.81515 -14.69592 -14.50045 -14.26038 -14.02595 -13.90244 -13.68532 -13.52463 -13.27310 -13.08602 -12.90293 -12.73136 -12.67858 -12.53848 -12.45801 -12.38760 -12.19488 -11.99352 -11.98382 -11.88623 -11.77578 -11.67871 -11.42257 -11.21029 -11.09123 -10.56357 -9.50561 -9.35194 -9.11802 -8.64222 -7.88248 -5.37451 0.53687 0.63406 1.45432 1.47051 1.58040 2.50507 2.89169 3.16294 3.30540 3.69561 3.83075 3.95286 4.01235 4.08841 4.10648 4.15229 4.21883 4.28653 4.33481 4.43131 4.46131 4.54811 4.68142 4.70805 4.72034 4.75684 4.83466 4.85147 4.87456 4.88111 4.91160 4.99612 5.01074 5.05098 5.08322 5.10941 5.15130 5.22076 5.26533 5.33730 5.38080 5.40718 5.47222 5.51729 5.64515 5.65731 5.73515 5.83243 5.86318 6.21054 6.29903 6.40785 6.53273 7.15430 7.85141 8.38852 9.18188 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.002986 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.481361 B = 9375.743574 C = 9579.961275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.128 3.872 4 H 0.079 0.921 5 N -0.677 5.677 6 C 0.111 3.889 7 C -0.101 4.101 8 C 0.142 3.858 9 N -0.610 5.610 10 C -0.265 4.265 11 H 0.062 0.938 12 C -0.047 4.047 13 N -0.934 5.934 14 Si 0.967 3.033 15 H -0.267 1.267 16 H -0.291 1.291 17 H -0.288 1.288 18 C 0.184 3.816 19 C -0.126 4.126 20 C -0.067 4.067 21 C -0.103 4.103 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.132 4.132 25 C -0.126 4.126 26 C -0.103 4.103 27 C -0.117 4.117 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.343 0.657 34 H 0.034 0.966 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.012 0.988 38 H 0.051 0.949 39 H 0.250 0.750 40 H -0.004 1.004 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.119 0.881 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.069 0.931 51 H 0.079 0.921 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 -0.768 22.767 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C 0.018 3.982 4 H 0.097 0.903 5 N -0.309 5.309 6 C 0.002 3.998 7 C -0.141 4.141 8 C 0.017 3.983 9 N -0.333 5.333 10 C -0.395 4.395 11 H 0.080 0.920 12 C -0.243 4.243 13 N -0.580 5.580 14 Si 0.795 3.205 15 H -0.192 1.192 16 H -0.217 1.217 17 H -0.215 1.215 18 C 0.058 3.942 19 C -0.165 4.165 20 C -0.067 4.067 21 C -0.121 4.121 22 C -0.108 4.108 23 C -0.167 4.167 24 C -0.149 4.149 25 C -0.143 4.143 26 C -0.104 4.104 27 C -0.174 4.174 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.014 0.986 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.137 0.863 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.081 0.919 48 H 0.153 0.847 49 H 0.154 0.846 50 H 0.087 0.913 51 H 0.097 0.903 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.646 -0.220 22.789 24.748 hybrid contribution 0.165 -0.563 -1.477 1.589 sum -9.481 -0.783 21.312 23.339 Atomic orbital electron populations 1.21773 0.94915 1.02044 1.01865 1.22113 0.97417 0.96442 1.02456 1.20454 0.98974 0.90934 0.87799 0.90287 1.60638 1.05255 1.61973 1.03043 1.21169 0.92451 0.96346 0.89874 1.21802 0.95864 0.98772 0.97676 1.21049 0.94022 0.97806 0.85473 1.44269 1.32584 1.48259 1.08226 1.19509 1.36328 0.97249 0.86433 0.92045 1.25886 1.01154 0.96933 1.00334 1.70166 1.54194 1.14537 1.19101 0.85209 0.76965 0.79011 0.79278 1.19185 1.21744 1.21498 1.20471 0.86732 0.90650 0.96354 1.22156 0.98149 1.01131 0.95110 1.19625 0.95503 0.98045 0.93540 1.20903 0.95862 0.96874 0.98498 1.20183 0.98227 0.98723 0.93659 1.20781 0.94369 0.98908 1.02678 1.21217 0.96515 1.00200 0.97012 1.21181 0.96525 0.97707 0.98927 1.19925 0.97988 0.99456 0.92988 1.20873 0.94371 0.98958 1.03167 0.92921 0.91983 0.92301 0.92354 0.90493 0.83609 0.94755 0.93129 0.91572 0.97024 0.93031 0.94065 0.98622 0.93178 0.91520 0.92792 0.86256 0.90550 0.90771 0.91871 0.84715 0.84599 0.91280 0.90251 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.11 71.98 0.66 -2.16 16 2 C -0.15 -2.99 5.63 30.60 0.17 -2.82 16 3 C 0.13 3.01 1.66 44.17 0.07 3.08 16 4 H 0.08 1.99 6.01 -2.38 -0.01 1.97 16 5 N -0.68 -18.25 5.02 -473.17 -2.38 -20.62 16 6 C 0.11 3.65 2.25 44.94 0.10 3.75 16 7 C -0.10 -3.63 5.58 30.67 0.17 -3.46 16 8 C 0.14 6.16 6.52 86.36 0.56 6.72 16 9 N -0.61 -31.55 2.98 -699.08 -2.08 -33.63 16 10 C -0.26 -14.98 9.56 84.04 0.80 -14.18 16 11 H 0.06 3.43 7.87 -2.91 -0.02 3.40 16 12 C -0.05 -2.70 4.96 84.87 0.42 -2.28 16 13 N -0.93 -55.92 11.28 21.65 0.24 -55.68 16 14 Si 0.97 45.54 29.58 68.60 2.03 47.57 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 18 C 0.18 9.02 5.26 86.36 0.45 9.47 16 19 C -0.13 -4.75 5.35 30.67 0.16 -4.59 16 20 C -0.07 -1.52 4.14 -19.87 -0.08 -1.61 16 21 C -0.10 -2.36 7.49 22.27 0.17 -2.20 16 22 C -0.11 -2.20 5.88 -19.86 -0.12 -2.31 16 23 C -0.11 -1.74 10.01 71.24 0.71 -1.03 16 24 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 25 C -0.13 -2.35 9.70 22.27 0.22 -2.14 16 26 C -0.10 -2.14 5.88 -19.87 -0.12 -2.26 16 27 C -0.12 -1.98 9.22 71.24 0.66 -1.33 16 28 H 0.05 1.01 6.53 -2.39 -0.02 0.99 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.16 6.17 -2.39 -0.01 1.14 16 31 H 0.06 1.31 7.52 -2.39 -0.02 1.29 16 32 H 0.08 1.43 6.81 -2.39 -0.02 1.41 16 33 H 0.34 8.63 5.69 -89.69 -0.51 8.12 16 34 H 0.03 1.17 7.23 -2.39 -0.02 1.15 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 36 H 0.07 2.10 7.49 -2.38 -0.02 2.08 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 39 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.05 2.77 6.24 -2.39 -0.01 2.76 16 42 H 0.07 2.20 8.10 -2.39 -0.02 2.18 16 43 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.12 2.79 6.94 -2.91 -0.02 2.77 16 45 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 47 H 0.06 1.03 8.09 -2.39 -0.02 1.01 16 48 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 49 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 52 H 0.07 1.14 5.38 -2.39 -0.01 1.12 16 Total: -1.00 -63.78 389.67 3.42 -60.36 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.38 Total: 23.56 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 5.23 Total: -21.55 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -4.22 Total: -109.93 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -63.78 3.42 -60.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599027273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.981 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds