Wall clock time and date at job start Tue Mar 31 2020 11:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47033 * 2 1 4 4 C 1.50703 * 109.47339 * 120.00331 * 2 1 3 5 5 C 1.38255 * 119.99826 * 300.18549 * 4 2 1 6 6 C 1.38210 * 119.99818 * 180.23029 * 5 4 2 7 7 C 1.38253 * 120.00199 * 359.81807 * 6 5 4 8 8 C 1.38213 * 120.00073 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00577 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47708 * 199.97901 * 9 8 7 11 11 C 1.53001 * 109.47020 * 79.97684 * 9 8 7 12 12 N 1.46904 * 109.47046 * 319.97905 * 9 8 7 13 13 C 1.46902 * 111.00024 * 277.03886 * 12 9 8 14 14 C 1.53037 * 109.45771 * 271.41918 * 13 12 9 15 15 C 1.53189 * 109.30824 * 178.61549 * 14 13 12 16 16 N 1.46928 * 108.77878 * 54.63784 * 15 14 13 17 17 C 1.36934 * 120.63190 * 126.36925 * 16 15 14 18 18 H 1.07999 * 120.00109 * 207.46544 * 17 16 15 19 19 C 1.38815 * 120.00202 * 27.46361 * 17 16 15 20 20 N 1.31621 * 119.99926 * 28.77214 * 19 17 16 21 21 Si 1.86800 * 119.99929 * 208.78053 * 19 17 16 22 22 H 1.48496 * 109.47215 * 94.95039 * 21 19 17 23 23 H 1.48496 * 109.46840 * 214.95102 * 21 19 17 24 24 H 1.48494 * 109.46940 * 334.94535 * 21 19 17 25 25 C 1.46928 * 118.73675 * 306.39067 * 16 15 14 26 26 C 1.53042 * 109.45566 * 151.35181 * 13 12 9 27 27 C 1.38213 * 120.00229 * 120.00141 * 4 2 1 28 28 H 1.08997 * 109.47510 * 59.99652 * 1 2 3 29 29 H 1.09003 * 109.46934 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46941 * 299.99512 * 1 2 3 31 31 H 1.09003 * 109.46941 * 240.00488 * 2 1 3 32 32 H 1.09002 * 109.47206 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47503 * 300.00041 * 3 2 1 34 34 H 1.09003 * 109.46859 * 60.00437 * 3 2 1 35 35 H 1.08001 * 120.00413 * 0.02562 * 5 4 2 36 36 H 1.08004 * 119.99791 * 179.78866 * 6 5 4 37 37 H 1.08004 * 120.00520 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47269 * 295.65333 * 11 9 8 39 39 H 1.09000 * 109.46979 * 55.65704 * 11 9 8 40 40 H 1.09001 * 109.47229 * 175.66139 * 11 9 8 41 41 H 1.00901 * 110.99648 * 40.99542 * 12 9 8 42 42 H 1.08993 * 109.45863 * 31.38235 * 13 12 9 43 43 H 1.08995 * 109.49723 * 298.56595 * 14 13 12 44 44 H 1.09001 * 109.49638 * 58.66965 * 14 13 12 45 45 H 1.09005 * 109.58889 * 294.84811 * 15 14 13 46 46 H 1.09003 * 109.70458 * 174.49688 * 15 14 13 47 47 H 0.97001 * 120.00289 * 180.02562 * 20 19 17 48 48 H 1.09005 * 109.58603 * 293.82249 * 25 16 15 49 49 H 1.08993 * 109.70440 * 173.46441 * 25 16 15 50 50 H 1.08996 * 109.49888 * 301.33353 * 26 13 12 51 51 H 1.09004 * 109.49799 * 61.40343 * 26 13 12 52 52 H 1.08003 * 119.99673 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6952 -0.2404 2.4861 6 6 2.1599 -0.8892 3.6146 7 6 2.9587 -2.0104 3.4877 8 6 3.2923 -2.4829 2.2324 9 6 4.1635 -3.7047 2.0939 10 1 4.6061 -3.7245 1.0981 11 6 3.3158 -4.9615 2.3003 12 7 5.2302 -3.6624 3.1031 13 6 6.3528 -2.8313 2.6480 14 6 7.3393 -3.6950 1.8588 15 6 8.4908 -2.8183 1.3566 16 7 9.0856 -2.1167 2.5023 17 6 10.4307 -2.1950 2.7467 18 1 10.8037 -2.0849 3.7542 19 6 11.3147 -2.4158 1.6995 20 7 11.0133 -2.0048 0.4860 21 14 12.9321 -3.2964 2.0126 22 1 12.7734 -4.7430 1.7169 23 1 13.9849 -2.7245 1.1354 24 1 13.3237 -3.1218 3.4343 25 6 8.2096 -1.3298 3.3811 26 6 7.0612 -2.2231 3.8606 27 6 2.8270 -1.8342 1.1036 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.0715 0.6357 2.5853 36 1 1.8993 -0.5200 4.5955 37 1 3.3222 -2.5172 4.3695 38 1 2.9361 -4.9801 3.3219 39 1 2.4791 -4.9542 1.6018 40 1 3.9283 -5.8459 2.1244 41 1 4.8759 -3.3373 3.9902 42 1 5.9774 -2.0326 2.0085 43 1 7.7341 -4.4790 2.5049 44 1 6.8282 -4.1465 1.0085 45 1 8.1103 -2.0905 0.6398 46 1 9.2458 -3.4420 0.8780 47 1 11.6309 -2.1594 -0.2459 48 1 7.8061 -0.4806 2.8294 49 1 8.7768 -0.9713 4.2399 50 1 6.3522 -1.6271 4.4351 51 1 7.4581 -3.0211 4.4882 52 1 3.0876 -2.2033 0.1226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599028229.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:01 Heat of formation + Delta-G solvation = 24.689877 kcal Electronic energy + Delta-G solvation = -27180.525369 eV Core-core repulsion = 23758.228038 eV Total energy + Delta-G solvation = -3422.297330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.06488 -38.11831 -36.37432 -34.79419 -32.91888 -31.15175 -30.33734 -29.88630 -29.13297 -28.08645 -27.36276 -24.56549 -23.99245 -22.69061 -22.31367 -21.63159 -21.16238 -19.13976 -18.99967 -17.02137 -16.67775 -15.95067 -15.44120 -14.89357 -14.82306 -14.53974 -14.06944 -13.91984 -13.75873 -13.67931 -13.49201 -13.42544 -13.16476 -12.89453 -12.61201 -12.43516 -12.36843 -12.16581 -12.00745 -11.76737 -11.58278 -11.36640 -11.30027 -11.10930 -10.98053 -10.97514 -10.73249 -10.68276 -10.62971 -10.19264 -10.18483 -9.87707 -9.51996 -9.45625 -8.85155 -8.67694 -8.38833 -8.13729 -6.68552 -5.79042 -3.12172 1.29136 1.34489 3.41832 3.50117 3.51527 3.68445 4.36023 4.43914 4.55323 4.57634 4.79496 4.90554 4.97829 5.02776 5.13254 5.32283 5.33272 5.35525 5.38946 5.40772 5.43884 5.49176 5.55067 5.59063 5.63191 5.72622 5.76337 5.81855 5.90486 5.94044 5.97613 6.01987 6.03923 6.04780 6.16728 6.22899 6.37473 6.39511 6.43817 6.49887 6.55100 6.66818 6.70165 6.77727 6.82250 6.95465 7.02690 7.34161 7.40750 7.59161 7.67207 7.87705 8.46053 9.22399 9.89087 10.47623 11.29207 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017271 B = 0.003057 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.827360 B = 9158.319869 C = 9750.241660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.074 4.074 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.099 4.099 9 C 0.121 3.879 10 H 0.085 0.915 11 C -0.132 4.132 12 N -0.678 5.678 13 C 0.098 3.902 14 C -0.122 4.122 15 C 0.173 3.827 16 N -0.589 5.589 17 C -0.260 4.260 18 H 0.065 0.935 19 C 0.008 3.992 20 N -0.889 5.889 21 Si 0.890 3.110 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.278 1.278 25 C 0.149 3.851 26 C -0.134 4.134 27 C -0.111 4.111 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.334 0.666 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.044 0.956 45 H 0.015 0.985 46 H 0.074 0.926 47 H 0.253 0.747 48 H 0.014 0.986 49 H 0.054 0.946 50 H 0.045 0.955 51 H 0.066 0.934 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.708 1.373 1.751 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.202 4.202 4 C -0.074 4.074 5 C -0.139 4.139 6 C -0.132 4.132 7 C -0.140 4.140 8 C -0.101 4.101 9 C 0.010 3.990 10 H 0.103 0.897 11 C -0.189 4.189 12 N -0.309 5.309 13 C -0.011 4.011 14 C -0.162 4.162 15 C 0.046 3.954 16 N -0.312 5.312 17 C -0.389 4.389 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.203 1.203 25 C 0.022 3.978 26 C -0.173 4.173 27 C -0.130 4.130 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.154 0.846 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.032 0.968 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.084 0.916 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.291 0.782 1.407 22.349 hybrid contribution 0.453 0.504 0.169 0.699 sum -21.838 1.286 1.576 21.932 Atomic orbital electron populations 1.21846 0.94440 1.01891 1.01783 1.20136 0.95800 0.96178 0.95520 1.21857 1.01630 0.94957 1.01740 1.19837 0.97414 0.95490 0.94628 1.20897 1.00904 1.00115 0.92025 1.21059 0.97970 0.95802 0.98391 1.20894 0.99035 0.97129 0.96937 1.20784 0.98216 0.97817 0.93291 1.20646 0.89950 0.91031 0.97368 0.89656 1.21725 0.98771 0.96978 1.01464 1.60906 1.08272 1.56865 1.04816 1.21453 0.90116 0.93208 0.96342 1.22159 0.96738 0.98917 0.98410 1.20690 0.92663 0.93208 0.88834 1.44071 1.03563 1.53859 1.29690 1.19115 0.81772 1.45571 0.92422 0.91712 1.24911 0.97354 1.00881 0.96029 1.70212 1.37454 1.44832 1.00656 0.86465 0.83584 0.80351 0.77663 1.21431 1.21977 1.20311 1.20827 0.90850 0.91950 0.94141 1.22223 0.98409 0.99897 0.96798 1.20968 0.98195 0.95540 0.98256 0.92450 0.92612 0.92558 0.90472 0.92263 0.92428 0.92549 0.86499 0.86301 0.86316 0.92766 0.92781 0.91665 0.84579 0.94360 0.92022 0.93702 0.96675 0.90721 0.93742 0.96808 0.92715 0.93642 0.91562 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.00 37.16 0.33 -0.75 16 2 C -0.06 -0.52 3.09 -91.77 -0.28 -0.81 16 3 C -0.14 -1.27 9.01 37.16 0.33 -0.93 16 4 C -0.07 -0.80 4.78 -104.62 -0.50 -1.30 16 5 C -0.12 -1.27 8.71 -39.59 -0.34 -1.62 16 6 C -0.11 -1.22 10.05 -39.59 -0.40 -1.62 16 7 C -0.12 -1.41 9.14 -39.59 -0.36 -1.77 16 8 C -0.10 -1.22 4.52 -104.63 -0.47 -1.69 16 9 C 0.12 1.54 2.66 -68.86 -0.18 1.35 16 10 H 0.09 1.18 7.25 -51.93 -0.38 0.81 16 11 C -0.13 -1.44 9.50 37.16 0.35 -1.09 16 12 N -0.68 -9.73 6.04 -100.91 -0.61 -10.34 16 13 C 0.10 1.69 2.25 -67.67 -0.15 1.54 16 14 C -0.12 -2.42 5.61 -26.61 -0.15 -2.57 16 15 C 0.17 4.19 5.43 -3.71 -0.02 4.17 16 16 N -0.59 -15.08 2.99 -172.31 -0.51 -15.60 16 17 C -0.26 -7.29 9.49 -15.06 -0.14 -7.43 16 18 H 0.07 1.80 7.97 -52.49 -0.42 1.38 16 19 C 0.01 0.23 4.57 -17.43 -0.08 0.15 16 20 N -0.89 -26.31 11.98 55.49 0.66 -25.64 16 21 Si 0.89 21.93 29.64 -169.99 -5.04 16.89 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.15 3.23 6.51 -3.71 -0.02 3.21 16 26 C -0.13 -2.39 5.32 -26.61 -0.14 -2.53 16 27 C -0.11 -1.33 9.29 -39.58 -0.37 -1.70 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 7.38 -51.93 -0.38 0.03 16 31 H 0.08 0.69 7.88 -51.93 -0.41 0.28 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.47 7.40 -51.93 -0.38 0.08 16 35 H 0.12 1.02 7.10 -52.49 -0.37 0.65 16 36 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 37 H 0.12 1.25 6.51 -52.48 -0.34 0.91 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.33 4.42 5.95 -39.29 -0.23 4.19 16 42 H 0.04 0.72 7.53 -51.93 -0.39 0.32 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.04 0.82 7.66 -51.93 -0.40 0.42 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 2.01 6.39 -51.93 -0.33 1.68 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.05 1.16 7.94 -51.93 -0.41 0.75 16 50 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 51 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 52 H 0.12 1.33 7.92 -52.48 -0.42 0.92 16 LS Contribution 399.83 15.07 6.03 6.03 Total: -1.00 -29.92 399.83 -11.57 -41.49 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -9.50 Total: 2.56 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.60 Total: -15.38 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.46 Total: -51.58 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.04 Total: 16.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.92 -11.57 -41.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599028229.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.181 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds