Wall clock time and date at job start Tue Mar 31 2020 11:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47033 * 2 1 4 4 C 1.50703 * 109.47339 * 120.00331 * 2 1 3 5 5 C 1.38255 * 119.99826 * 300.18549 * 4 2 1 6 6 C 1.38210 * 119.99818 * 180.23029 * 5 4 2 7 7 C 1.38253 * 120.00199 * 359.81807 * 6 5 4 8 8 C 1.38213 * 120.00073 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00577 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47708 * 199.97901 * 9 8 7 11 11 C 1.53001 * 109.47020 * 79.97684 * 9 8 7 12 12 N 1.46904 * 109.47046 * 319.97905 * 9 8 7 13 13 C 1.46902 * 111.00024 * 277.03886 * 12 9 8 14 14 C 1.53037 * 109.45771 * 271.41918 * 13 12 9 15 15 C 1.53189 * 109.30824 * 178.61549 * 14 13 12 16 16 N 1.46928 * 108.77878 * 54.63784 * 15 14 13 17 17 C 1.36934 * 120.63190 * 126.36925 * 16 15 14 18 18 H 1.07999 * 120.00109 * 207.46544 * 17 16 15 19 19 C 1.38815 * 120.00202 * 27.46361 * 17 16 15 20 20 N 1.31621 * 119.99926 * 28.77214 * 19 17 16 21 21 Si 1.86800 * 119.99929 * 208.78053 * 19 17 16 22 22 H 1.48496 * 109.47215 * 94.95039 * 21 19 17 23 23 H 1.48496 * 109.46840 * 214.95102 * 21 19 17 24 24 H 1.48494 * 109.46940 * 334.94535 * 21 19 17 25 25 C 1.46928 * 118.73675 * 306.39067 * 16 15 14 26 26 C 1.53042 * 109.45566 * 151.35181 * 13 12 9 27 27 C 1.38213 * 120.00229 * 120.00141 * 4 2 1 28 28 H 1.08997 * 109.47510 * 59.99652 * 1 2 3 29 29 H 1.09003 * 109.46934 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46941 * 299.99512 * 1 2 3 31 31 H 1.09003 * 109.46941 * 240.00488 * 2 1 3 32 32 H 1.09002 * 109.47206 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47503 * 300.00041 * 3 2 1 34 34 H 1.09003 * 109.46859 * 60.00437 * 3 2 1 35 35 H 1.08001 * 120.00413 * 0.02562 * 5 4 2 36 36 H 1.08004 * 119.99791 * 179.78866 * 6 5 4 37 37 H 1.08004 * 120.00520 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47269 * 295.65333 * 11 9 8 39 39 H 1.09000 * 109.46979 * 55.65704 * 11 9 8 40 40 H 1.09001 * 109.47229 * 175.66139 * 11 9 8 41 41 H 1.00901 * 110.99648 * 40.99542 * 12 9 8 42 42 H 1.08993 * 109.45863 * 31.38235 * 13 12 9 43 43 H 1.08995 * 109.49723 * 298.56595 * 14 13 12 44 44 H 1.09001 * 109.49638 * 58.66965 * 14 13 12 45 45 H 1.09005 * 109.58889 * 294.84811 * 15 14 13 46 46 H 1.09003 * 109.70458 * 174.49688 * 15 14 13 47 47 H 0.97001 * 120.00289 * 180.02562 * 20 19 17 48 48 H 1.09005 * 109.58603 * 293.82249 * 25 16 15 49 49 H 1.08993 * 109.70440 * 173.46441 * 25 16 15 50 50 H 1.08996 * 109.49888 * 301.33353 * 26 13 12 51 51 H 1.09004 * 109.49799 * 61.40343 * 26 13 12 52 52 H 1.08003 * 119.99673 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6952 -0.2404 2.4861 6 6 2.1599 -0.8892 3.6146 7 6 2.9587 -2.0104 3.4877 8 6 3.2923 -2.4829 2.2324 9 6 4.1635 -3.7047 2.0939 10 1 4.6061 -3.7245 1.0981 11 6 3.3158 -4.9615 2.3003 12 7 5.2302 -3.6624 3.1031 13 6 6.3528 -2.8313 2.6480 14 6 7.3393 -3.6950 1.8588 15 6 8.4908 -2.8183 1.3566 16 7 9.0856 -2.1167 2.5023 17 6 10.4307 -2.1950 2.7467 18 1 10.8037 -2.0849 3.7542 19 6 11.3147 -2.4158 1.6995 20 7 11.0133 -2.0048 0.4860 21 14 12.9321 -3.2964 2.0126 22 1 12.7734 -4.7430 1.7169 23 1 13.9849 -2.7245 1.1354 24 1 13.3237 -3.1218 3.4343 25 6 8.2096 -1.3298 3.3811 26 6 7.0612 -2.2231 3.8606 27 6 2.8270 -1.8342 1.1036 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.0715 0.6357 2.5853 36 1 1.8993 -0.5200 4.5955 37 1 3.3222 -2.5172 4.3695 38 1 2.9361 -4.9801 3.3219 39 1 2.4791 -4.9542 1.6018 40 1 3.9283 -5.8459 2.1244 41 1 4.8759 -3.3373 3.9902 42 1 5.9774 -2.0326 2.0085 43 1 7.7341 -4.4790 2.5049 44 1 6.8282 -4.1465 1.0085 45 1 8.1103 -2.0905 0.6398 46 1 9.2458 -3.4420 0.8780 47 1 11.6309 -2.1594 -0.2459 48 1 7.8061 -0.4806 2.8294 49 1 8.7768 -0.9713 4.2399 50 1 6.3522 -1.6271 4.4351 51 1 7.4581 -3.0211 4.4882 52 1 3.0876 -2.2033 0.1226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599028229.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:00 Heat of formation + Delta-G solvation = 10.174694 kcal Electronic energy + Delta-G solvation = -27181.154794 eV Core-core repulsion = 23758.228038 eV Total energy + Delta-G solvation = -3422.926756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97655 -39.53777 -37.61245 -35.86435 -34.52824 -32.71612 -31.70251 -31.30785 -30.06215 -29.46863 -28.00064 -26.45770 -24.87809 -23.96125 -23.69565 -23.00783 -22.30866 -20.73698 -19.99440 -18.69544 -17.88294 -17.07448 -16.69199 -16.30745 -15.91897 -15.75968 -15.58640 -15.39256 -14.88873 -14.80584 -14.63553 -14.49591 -14.39460 -14.25047 -13.91341 -13.68069 -13.36417 -13.13393 -13.10370 -12.93781 -12.78500 -12.74801 -12.60896 -12.51055 -12.39099 -12.06998 -12.04586 -11.99852 -11.81711 -11.79626 -11.59991 -11.49606 -11.24566 -11.12691 -10.52222 -9.70418 -9.56321 -9.33169 -8.77268 -7.93325 -5.30064 0.44430 0.49575 1.44946 1.48164 1.57032 2.50876 2.83738 3.13012 3.22947 3.62338 3.66105 3.80318 3.96140 3.97611 4.09431 4.13350 4.24487 4.30109 4.35496 4.41043 4.47131 4.51576 4.54740 4.60484 4.65113 4.68529 4.76857 4.78802 4.83306 4.91064 4.96875 4.98771 5.01932 5.04802 5.09159 5.14326 5.15143 5.19921 5.22700 5.31446 5.34200 5.36812 5.37400 5.39852 5.58932 5.62062 5.66017 5.69152 5.74789 6.12992 6.16581 6.34194 6.54216 7.10275 7.83059 8.37475 9.13272 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017271 B = 0.003057 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.827360 B = 9158.319869 C = 9750.241660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C -0.143 4.143 4 C -0.079 4.079 5 C -0.126 4.126 6 C -0.117 4.117 7 C -0.132 4.132 8 C -0.110 4.110 9 C 0.122 3.878 10 H 0.069 0.931 11 C -0.124 4.124 12 N -0.672 5.672 13 C 0.112 3.888 14 C -0.108 4.108 15 C 0.181 3.819 16 N -0.607 5.607 17 C -0.272 4.272 18 H 0.065 0.935 19 C -0.043 4.043 20 N -0.925 5.925 21 Si 0.957 3.043 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.266 1.266 25 C 0.144 3.856 26 C -0.120 4.120 27 C -0.131 4.131 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.345 0.655 42 H 0.025 0.975 43 H 0.053 0.947 44 H 0.056 0.944 45 H -0.008 1.008 46 H 0.041 0.959 47 H 0.251 0.749 48 H 0.006 0.994 49 H 0.056 0.944 50 H 0.077 0.923 51 H 0.063 0.937 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.511 1.304 3.314 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.077 4.077 3 C -0.200 4.200 4 C -0.079 4.079 5 C -0.144 4.144 6 C -0.135 4.135 7 C -0.150 4.150 8 C -0.111 4.111 9 C 0.012 3.988 10 H 0.087 0.913 11 C -0.182 4.182 12 N -0.304 5.304 13 C 0.002 3.998 14 C -0.148 4.148 15 C 0.055 3.945 16 N -0.330 5.330 17 C -0.401 4.401 18 H 0.083 0.917 19 C -0.240 4.240 20 N -0.569 5.569 21 Si 0.785 3.215 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.191 1.191 25 C 0.018 3.982 26 C -0.159 4.159 27 C -0.149 4.149 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.167 0.833 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.010 0.990 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.024 0.976 49 H 0.075 0.925 50 H 0.095 0.905 51 H 0.082 0.918 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.123 0.710 3.000 24.319 hybrid contribution 0.957 0.602 -0.334 1.179 sum -23.166 1.312 2.666 23.356 Atomic orbital electron populations 1.21809 0.93040 1.01964 1.02674 1.20174 0.96916 0.96034 0.94621 1.21843 1.00408 0.94991 1.02742 1.20078 0.96968 0.95154 0.95703 1.21173 1.00851 1.00591 0.91758 1.21371 0.97267 0.95318 0.99531 1.21067 0.99450 0.97678 0.96833 1.20735 0.98708 0.97796 0.93897 1.20623 0.89728 0.92425 0.95997 0.91258 1.21661 0.98641 0.95676 1.02236 1.60787 1.08172 1.55782 1.05682 1.21124 0.90544 0.92490 0.95594 1.21921 0.95775 0.98063 0.99002 1.20494 0.93076 0.92630 0.88328 1.44339 1.03535 1.54830 1.30322 1.19428 0.83140 1.45119 0.92461 0.91715 1.25683 1.00817 1.01600 0.95868 1.70322 1.38848 1.46276 1.01485 0.85418 0.79506 0.78741 0.77874 1.21309 1.22150 1.19091 1.20982 0.91592 0.92196 0.93380 1.22041 0.97485 0.99411 0.96956 1.21107 0.99130 0.96418 0.98291 0.91268 0.92940 0.91964 0.90929 0.94114 0.91120 0.91885 0.84680 0.84088 0.85265 0.91970 0.91785 0.92021 0.83333 0.95693 0.92777 0.92491 0.99002 0.94029 0.94036 0.97599 0.92519 0.90466 0.91780 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.00 71.98 0.65 -1.18 16 2 C -0.06 -1.01 3.09 -11.54 -0.04 -1.04 16 3 C -0.14 -2.33 9.01 71.98 0.65 -1.69 16 4 C -0.08 -1.64 4.78 -19.87 -0.09 -1.73 16 5 C -0.13 -2.37 8.71 22.27 0.19 -2.18 16 6 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 7 C -0.13 -2.76 9.14 22.27 0.20 -2.56 16 8 C -0.11 -2.57 4.52 -19.87 -0.09 -2.66 16 9 C 0.12 2.99 2.66 44.17 0.12 3.10 16 10 H 0.07 1.91 7.25 -2.39 -0.02 1.89 16 11 C -0.12 -2.52 9.50 71.98 0.68 -1.83 16 12 N -0.67 -18.16 6.04 -473.18 -2.86 -21.02 16 13 C 0.11 3.79 2.25 44.94 0.10 3.89 16 14 C -0.11 -4.30 5.61 30.67 0.17 -4.12 16 15 C 0.18 9.10 5.43 86.36 0.47 9.56 16 16 N -0.61 -31.63 2.99 -699.08 -2.09 -33.72 16 17 C -0.27 -15.45 9.49 84.03 0.80 -14.65 16 18 H 0.07 3.61 7.97 -2.91 -0.02 3.59 16 19 C -0.04 -2.46 4.57 84.86 0.39 -2.07 16 20 N -0.92 -56.37 11.98 21.65 0.26 -56.11 16 21 Si 0.96 45.75 29.64 68.60 2.03 47.78 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 C 0.14 6.22 6.51 86.36 0.56 6.79 16 26 C -0.12 -4.08 5.32 30.67 0.16 -3.91 16 27 C -0.13 -3.08 9.29 22.27 0.21 -2.87 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.75 7.38 -2.39 -0.02 0.74 16 31 H 0.07 1.28 7.88 -2.39 -0.02 1.26 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.93 7.40 -2.39 -0.02 0.91 16 35 H 0.14 1.99 7.10 -2.91 -0.02 1.97 16 36 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.13 2.35 6.51 -2.91 -0.02 2.33 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.35 8.21 5.95 -89.69 -0.53 7.68 16 42 H 0.03 0.93 7.53 -2.39 -0.02 0.91 16 43 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.06 2.10 7.66 -2.39 -0.02 2.08 16 45 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 46 H 0.04 2.33 6.39 -2.39 -0.02 2.31 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 49 H 0.06 2.38 7.94 -2.39 -0.02 2.36 16 50 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 51 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 52 H 0.12 2.67 7.92 -2.91 -0.02 2.65 16 Total: -1.00 -65.16 399.83 3.04 -62.12 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.33 Total: 22.07 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 5.36 Total: -21.13 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -4.69 Total: -110.84 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -65.16 3.04 -62.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599028229.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.296 kcal (2) G-P(sol) polarization free energy of solvation -65.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds