Wall clock time and date at job start Tue Mar 31 2020 11:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47439 * 2 1 4 4 C 1.52999 * 109.47266 * 239.99397 * 2 1 3 5 5 C 1.50705 * 109.46924 * 65.00063 * 4 2 1 6 6 H 1.07992 * 119.99887 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99885 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99980 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99999 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47476 * 90.00203 * 9 7 5 11 11 H 1.48502 * 109.47275 * 210.00280 * 9 7 5 12 12 H 1.48505 * 109.47105 * 329.99926 * 9 7 5 13 13 C 1.53000 * 109.47142 * 119.99421 * 2 1 3 14 14 N 1.46897 * 109.47408 * 183.16243 * 13 2 1 15 15 C 1.44183 * 110.99845 * 73.57421 * 14 13 2 16 16 C 1.54315 * 112.60786 * 217.52792 * 15 14 13 17 17 C 1.54326 * 111.72614 * 318.92084 * 16 15 14 18 18 N 1.44245 * 112.53713 * 318.91520 * 17 16 15 19 19 C 1.46900 * 110.95530 * 217.57901 * 18 17 16 20 20 C 1.50693 * 109.47126 * 302.19935 * 19 18 17 21 21 C 1.38240 * 120.00134 * 274.45710 * 20 19 18 22 22 C 1.38237 * 119.99712 * 179.76640 * 21 20 19 23 23 C 1.38233 * 119.99973 * 0.48618 * 22 21 20 24 24 C 1.38234 * 120.00224 * 359.79269 * 23 22 21 25 25 C 1.38233 * 120.00004 * 359.95566 * 24 23 22 26 26 C 1.48088 * 109.88089 * 94.44870 * 18 17 16 27 27 C 1.46083 * 112.07548 * 279.54428 * 26 18 17 28 28 H 1.08998 * 109.46722 * 64.48702 * 1 2 3 29 29 H 1.09001 * 109.46954 * 184.48885 * 1 2 3 30 30 H 1.08999 * 109.46897 * 304.48719 * 1 2 3 31 31 H 1.08993 * 109.47268 * 185.00176 * 4 2 1 32 32 H 1.09008 * 109.47115 * 305.00239 * 4 2 1 33 33 H 0.97003 * 119.99914 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47189 * 63.16454 * 13 2 1 35 35 H 1.09001 * 109.47393 * 303.16641 * 13 2 1 36 36 H 1.09005 * 108.85016 * 338.33150 * 15 14 13 37 37 H 1.08992 * 108.85836 * 96.72097 * 15 14 13 38 38 H 1.09007 * 109.03166 * 79.50006 * 16 15 14 39 39 H 1.09002 * 109.03294 * 198.33993 * 16 15 14 40 40 H 1.08994 * 108.85118 * 79.72552 * 17 16 15 41 41 H 1.09002 * 108.85358 * 198.11006 * 17 16 15 42 42 H 1.09002 * 109.46946 * 62.20321 * 19 18 17 43 43 H 1.09001 * 109.46975 * 182.20067 * 19 18 17 44 44 H 1.08001 * 119.99907 * 0.02562 * 21 20 19 45 45 H 1.08000 * 119.99256 * 180.25564 * 22 21 20 46 46 H 1.08007 * 119.99300 * 179.76770 * 23 22 21 47 47 H 1.07997 * 119.99728 * 179.97438 * 24 23 22 48 48 H 1.07998 * 119.99752 * 180.02562 * 25 24 23 49 49 H 1.08995 * 108.94863 * 158.89938 * 26 18 17 50 50 H 1.08998 * 108.94528 * 40.18546 * 26 18 17 51 51 H 1.09001 * 108.94750 * 181.41659 * 27 26 18 52 52 H 1.09005 * 108.94918 * 300.12717 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9739 -2.3758 7 6 1.9924 -0.4025 -3.7283 8 7 1.6450 0.2768 -4.7994 9 14 2.9628 -1.9892 -3.9026 10 1 2.0237 -3.1336 -4.0187 11 1 3.8110 -1.9195 -5.1196 12 1 3.8253 -2.1757 -2.7082 13 6 2.0401 -0.7211 1.2493 14 7 3.5070 -0.6553 1.2882 15 6 3.9557 0.6688 1.6408 16 6 5.2262 1.0889 0.8723 17 6 6.2375 -0.0718 0.7626 18 7 6.3431 -0.8304 1.9849 19 6 7.7309 -1.2470 2.2263 20 6 8.2219 -2.0604 1.0567 21 6 7.9737 -3.4194 1.0070 22 6 8.4199 -4.1647 -0.0683 23 6 9.1231 -3.5528 -1.0890 24 6 9.3764 -2.1949 -1.0366 25 6 8.9257 -1.4487 0.0362 26 6 5.4392 -2.0021 1.9301 27 6 4.0576 -1.6448 2.2425 28 1 -0.3633 0.4426 -0.9275 29 1 -0.3633 -1.0245 0.0804 30 1 -0.3633 0.5819 0.8471 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7200 -1.2950 33 1 1.8923 -0.0462 -5.6800 34 1 1.7238 -1.7639 1.2215 35 1 1.6311 -0.2410 2.1384 36 1 3.1597 1.3804 1.4212 37 1 4.1654 0.6966 2.7100 38 1 4.9450 1.4112 -0.1303 39 1 5.6972 1.9226 1.3930 40 1 5.9229 -0.7382 -0.0404 41 1 7.2172 0.3369 0.5151 42 1 8.3598 -0.3646 2.3448 43 1 7.7767 -1.8502 3.1331 44 1 7.4274 -3.8981 1.8064 45 1 8.2223 -5.2257 -0.1090 46 1 9.4750 -4.1359 -1.9274 47 1 9.9262 -1.7170 -1.8339 48 1 9.1232 -0.3877 0.0769 49 1 5.7826 -2.7479 2.6469 50 1 5.4760 -2.4309 0.9287 51 1 3.4437 -2.5450 2.2123 52 1 4.0194 -1.2243 3.2475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602429445.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:58 Heat of formation + Delta-G solvation = 32.947772 kcal Electronic energy + Delta-G solvation = -27954.473740 eV Core-core repulsion = 24532.534499 eV Total energy + Delta-G solvation = -3421.939241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15126 -38.72554 -36.68600 -34.38593 -32.43247 -32.14163 -31.37131 -30.96746 -28.63577 -27.46984 -26.29243 -24.68226 -24.35794 -22.66005 -22.18267 -21.65182 -20.30588 -19.77718 -18.58798 -16.81331 -16.71216 -16.22858 -15.87816 -15.45583 -15.14024 -14.71356 -14.50196 -14.41859 -14.21739 -13.62417 -13.54916 -13.37030 -12.90641 -12.82642 -12.68949 -12.47486 -12.23290 -12.13676 -11.72562 -11.57594 -11.41063 -11.21796 -11.15143 -11.04536 -10.93894 -10.90375 -10.77493 -10.50566 -10.29449 -10.07482 -9.62333 -9.59691 -9.33688 -8.99825 -8.90015 -8.88626 -8.39914 -8.25387 -7.81154 -5.91563 -3.86178 1.23613 1.30854 3.39410 3.46647 3.55642 3.64350 4.05649 4.20865 4.58129 4.67763 4.68901 4.89755 4.97826 5.08377 5.14973 5.27418 5.38895 5.40877 5.43822 5.45196 5.48323 5.58050 5.59632 5.63017 5.70998 5.80089 5.90070 5.90396 5.92162 6.01228 6.04932 6.09968 6.15001 6.23786 6.28863 6.33313 6.35561 6.37587 6.42100 6.47220 6.53414 6.55045 6.90233 6.90292 7.04721 7.11737 7.19869 7.23397 7.49620 7.60117 7.63501 7.78661 7.98204 8.69532 9.15139 9.73436 11.22223 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.004872 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.036636 B = 5745.649527 C = 7327.620157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 H 0.061 0.939 4 C 0.001 3.999 5 C -0.508 4.508 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.910 5.910 9 Si 0.875 3.125 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.262 1.262 13 C 0.064 3.936 14 N -0.524 5.524 15 C 0.069 3.931 16 C -0.102 4.102 17 C 0.063 3.937 18 N -0.519 5.519 19 C 0.094 3.906 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.109 4.109 26 C 0.058 3.942 27 C 0.059 3.941 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.001 0.999 33 H 0.260 0.740 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.066 0.934 50 H 0.050 0.950 51 H 0.069 0.931 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.960 -5.541 15.979 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 H 0.079 0.921 4 C -0.037 4.037 5 C -0.547 4.547 6 H 0.088 0.912 7 C -0.135 4.135 8 N -0.550 5.550 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.218 1.218 12 H -0.186 1.186 13 C -0.064 4.064 14 N -0.248 5.248 15 C -0.060 4.060 16 C -0.141 4.141 17 C -0.065 4.065 18 N -0.241 5.241 19 C -0.033 4.033 20 C -0.121 4.121 21 C -0.129 4.129 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.069 4.069 27 C -0.069 4.069 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.084 0.916 50 H 0.068 0.932 51 H 0.087 0.913 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.978 -5.330 15.739 21.714 hybrid contribution 0.426 -1.240 -0.356 1.358 sum 14.404 -6.570 15.383 22.074 Atomic orbital electron populations 1.21735 0.96137 1.00364 1.01133 1.21031 0.94351 0.99319 0.94505 0.92076 1.19493 0.97150 0.94691 0.92324 1.21243 1.34601 1.09342 0.89464 0.91239 1.24986 0.95730 0.96808 0.95994 1.69925 1.47775 1.39417 0.97909 0.86844 0.80795 0.84492 0.77614 1.20733 1.21848 1.18618 1.22337 0.85942 1.00562 0.97524 1.61397 1.09265 1.04913 1.49233 1.21697 0.96774 0.90306 0.97195 1.21975 0.94798 0.96398 1.00942 1.21796 0.98212 0.96137 0.90390 1.61992 1.04531 1.20589 1.37029 1.21335 0.89419 0.98009 0.94573 1.20728 0.98538 0.94696 0.98142 1.21053 0.99712 0.93562 0.98548 1.21142 0.98403 0.99884 0.94417 1.21158 0.99093 0.95085 0.98637 1.21165 1.00109 0.94278 0.98176 1.21091 0.97965 0.99595 0.94071 1.21185 0.92881 0.91768 1.01087 1.21098 0.95221 0.96443 0.94088 0.91125 0.93914 0.95078 0.95003 0.98023 0.93081 0.91701 0.96038 0.92016 0.94641 0.91149 0.92585 0.93125 0.92669 0.90019 0.90163 0.86340 0.86246 0.86271 0.86145 0.86180 0.91583 0.93215 0.91280 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.07 37.16 0.34 -2.21 16 2 C -0.07 -1.46 2.32 -90.62 -0.21 -1.67 16 3 H 0.06 1.27 6.74 -51.93 -0.35 0.92 16 4 C 0.00 0.02 3.45 -27.88 -0.10 -0.08 16 5 C -0.51 -14.59 8.90 -34.44 -0.31 -14.90 16 6 H 0.07 2.14 7.32 -52.49 -0.38 1.75 16 7 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.91 -28.68 13.96 55.43 0.77 -27.90 16 9 Si 0.87 22.69 27.47 -169.99 -4.67 18.02 16 10 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 12 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 13 C 0.06 1.05 4.21 -3.83 -0.02 1.04 16 14 N -0.52 -8.42 3.50 -239.08 -0.84 -9.26 16 15 C 0.07 1.04 4.97 -4.59 -0.02 1.02 16 16 C -0.10 -1.50 6.42 -25.35 -0.16 -1.66 16 17 C 0.06 0.89 4.23 -4.55 -0.02 0.87 16 18 N -0.52 -6.39 4.48 -240.48 -1.08 -7.46 16 19 C 0.09 0.96 5.31 -4.98 -0.03 0.94 16 20 C -0.12 -1.33 4.31 -104.62 -0.45 -1.78 16 21 C -0.11 -1.21 8.35 -39.58 -0.33 -1.54 16 22 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 23 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 24 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 25 C -0.11 -1.23 8.53 -39.58 -0.34 -1.56 16 26 C 0.06 0.74 3.85 -6.45 -0.02 0.71 16 27 C 0.06 0.80 5.18 -6.45 -0.03 0.76 16 28 H 0.07 1.49 6.83 -51.93 -0.35 1.14 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.81 6.61 -51.93 -0.34 0.46 16 32 H 0.00 0.04 7.57 -51.92 -0.39 -0.36 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 34 H 0.06 1.06 7.64 -51.93 -0.40 0.66 16 35 H 0.02 0.33 8.02 -51.93 -0.42 -0.09 16 36 H 0.06 0.97 6.26 -51.93 -0.32 0.65 16 37 H 0.04 0.51 7.16 -51.93 -0.37 0.13 16 38 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.88 7.16 -51.93 -0.37 0.51 16 41 H 0.05 0.71 5.94 -51.93 -0.31 0.40 16 42 H 0.08 0.77 8.00 -51.93 -0.42 0.35 16 43 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 44 H 0.12 1.13 7.23 -52.49 -0.38 0.75 16 45 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 46 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 47 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 48 H 0.12 1.20 7.37 -52.49 -0.39 0.82 16 49 H 0.07 0.69 7.02 -51.93 -0.36 0.33 16 50 H 0.05 0.75 6.77 -51.93 -0.35 0.40 16 51 H 0.07 0.88 7.55 -51.93 -0.39 0.49 16 52 H 0.04 0.48 7.36 -51.93 -0.38 0.10 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -31.62 386.40 -12.20 -43.82 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -9.23 Total: 0.38 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -2.99 Total: -23.43 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -1.14 Total: -44.62 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.62 -12.20 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429445.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.770 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds