Wall clock time and date at job start Tue Mar 31 2020 11:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47439 * 2 1 4 4 C 1.52999 * 109.47266 * 239.99397 * 2 1 3 5 5 C 1.50705 * 109.46924 * 65.00063 * 4 2 1 6 6 H 1.07992 * 119.99887 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99885 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99980 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99999 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47476 * 90.00203 * 9 7 5 11 11 H 1.48502 * 109.47275 * 210.00280 * 9 7 5 12 12 H 1.48505 * 109.47105 * 329.99926 * 9 7 5 13 13 C 1.53000 * 109.47142 * 119.99421 * 2 1 3 14 14 N 1.46897 * 109.47408 * 183.16243 * 13 2 1 15 15 C 1.44183 * 110.99845 * 73.57421 * 14 13 2 16 16 C 1.54315 * 112.60786 * 217.52792 * 15 14 13 17 17 C 1.54326 * 111.72614 * 318.92084 * 16 15 14 18 18 N 1.44245 * 112.53713 * 318.91520 * 17 16 15 19 19 C 1.46900 * 110.95530 * 217.57901 * 18 17 16 20 20 C 1.50693 * 109.47126 * 302.19935 * 19 18 17 21 21 C 1.38240 * 120.00134 * 274.45710 * 20 19 18 22 22 C 1.38237 * 119.99712 * 179.76640 * 21 20 19 23 23 C 1.38233 * 119.99973 * 0.48618 * 22 21 20 24 24 C 1.38234 * 120.00224 * 359.79269 * 23 22 21 25 25 C 1.38233 * 120.00004 * 359.95566 * 24 23 22 26 26 C 1.48088 * 109.88089 * 94.44870 * 18 17 16 27 27 C 1.46083 * 112.07548 * 279.54428 * 26 18 17 28 28 H 1.08998 * 109.46722 * 64.48702 * 1 2 3 29 29 H 1.09001 * 109.46954 * 184.48885 * 1 2 3 30 30 H 1.08999 * 109.46897 * 304.48719 * 1 2 3 31 31 H 1.08993 * 109.47268 * 185.00176 * 4 2 1 32 32 H 1.09008 * 109.47115 * 305.00239 * 4 2 1 33 33 H 0.97003 * 119.99914 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47189 * 63.16454 * 13 2 1 35 35 H 1.09001 * 109.47393 * 303.16641 * 13 2 1 36 36 H 1.09005 * 108.85016 * 338.33150 * 15 14 13 37 37 H 1.08992 * 108.85836 * 96.72097 * 15 14 13 38 38 H 1.09007 * 109.03166 * 79.50006 * 16 15 14 39 39 H 1.09002 * 109.03294 * 198.33993 * 16 15 14 40 40 H 1.08994 * 108.85118 * 79.72552 * 17 16 15 41 41 H 1.09002 * 108.85358 * 198.11006 * 17 16 15 42 42 H 1.09002 * 109.46946 * 62.20321 * 19 18 17 43 43 H 1.09001 * 109.46975 * 182.20067 * 19 18 17 44 44 H 1.08001 * 119.99907 * 0.02562 * 21 20 19 45 45 H 1.08000 * 119.99256 * 180.25564 * 22 21 20 46 46 H 1.08007 * 119.99300 * 179.76770 * 23 22 21 47 47 H 1.07997 * 119.99728 * 179.97438 * 24 23 22 48 48 H 1.07998 * 119.99752 * 180.02562 * 25 24 23 49 49 H 1.08995 * 108.94863 * 158.89938 * 26 18 17 50 50 H 1.08998 * 108.94528 * 40.18546 * 26 18 17 51 51 H 1.09001 * 108.94750 * 181.41659 * 27 26 18 52 52 H 1.09005 * 108.94918 * 300.12717 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9739 -2.3758 7 6 1.9924 -0.4025 -3.7283 8 7 1.6450 0.2768 -4.7994 9 14 2.9628 -1.9892 -3.9026 10 1 2.0237 -3.1336 -4.0187 11 1 3.8110 -1.9195 -5.1196 12 1 3.8253 -2.1757 -2.7082 13 6 2.0401 -0.7211 1.2493 14 7 3.5070 -0.6553 1.2882 15 6 3.9557 0.6688 1.6408 16 6 5.2262 1.0889 0.8723 17 6 6.2375 -0.0718 0.7626 18 7 6.3431 -0.8304 1.9849 19 6 7.7309 -1.2470 2.2263 20 6 8.2219 -2.0604 1.0567 21 6 7.9737 -3.4194 1.0070 22 6 8.4199 -4.1647 -0.0683 23 6 9.1231 -3.5528 -1.0890 24 6 9.3764 -2.1949 -1.0366 25 6 8.9257 -1.4487 0.0362 26 6 5.4392 -2.0021 1.9301 27 6 4.0576 -1.6448 2.2425 28 1 -0.3633 0.4426 -0.9275 29 1 -0.3633 -1.0245 0.0804 30 1 -0.3633 0.5819 0.8471 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7200 -1.2950 33 1 1.8923 -0.0462 -5.6800 34 1 1.7238 -1.7639 1.2215 35 1 1.6311 -0.2410 2.1384 36 1 3.1597 1.3804 1.4212 37 1 4.1654 0.6966 2.7100 38 1 4.9450 1.4112 -0.1303 39 1 5.6972 1.9226 1.3930 40 1 5.9229 -0.7382 -0.0404 41 1 7.2172 0.3369 0.5151 42 1 8.3598 -0.3646 2.3448 43 1 7.7767 -1.8502 3.1331 44 1 7.4274 -3.8981 1.8064 45 1 8.2223 -5.2257 -0.1090 46 1 9.4750 -4.1359 -1.9274 47 1 9.9262 -1.7170 -1.8339 48 1 9.1232 -0.3877 0.0769 49 1 5.7826 -2.7479 2.6469 50 1 5.4760 -2.4309 0.9287 51 1 3.4437 -2.5450 2.2123 52 1 4.0194 -1.2243 3.2475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602429445.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:56 Heat of formation + Delta-G solvation = 14.823867 kcal Electronic energy + Delta-G solvation = -27955.259652 eV Core-core repulsion = 24532.534499 eV Total energy + Delta-G solvation = -3422.725152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08712 -39.76072 -37.89826 -35.92629 -34.20185 -33.50615 -32.40576 -31.78483 -29.98392 -29.18157 -27.41583 -25.89602 -25.47867 -24.18967 -23.41742 -22.53702 -21.37607 -20.99628 -20.10863 -18.91099 -17.65046 -17.32564 -16.91256 -16.45772 -16.34008 -16.07619 -15.72668 -15.61327 -15.44281 -15.21080 -14.60000 -14.42165 -14.38952 -14.27010 -13.98413 -13.66677 -13.49988 -13.38911 -13.07288 -12.87111 -12.81946 -12.62412 -12.45402 -12.37888 -12.11533 -11.99483 -11.94629 -11.82426 -11.69930 -11.59546 -11.34997 -11.26025 -11.12382 -10.88835 -10.70167 -9.82401 -9.74811 -9.24158 -9.00521 -8.24393 -6.23133 0.41161 0.48513 1.30870 1.34015 1.47948 2.37753 2.79248 3.05745 3.12161 3.12493 3.86339 3.89455 4.02056 4.06470 4.12392 4.22931 4.24517 4.30913 4.31497 4.37201 4.46413 4.50774 4.55586 4.59932 4.63518 4.69126 4.74712 4.80651 4.86294 4.89052 4.93028 4.94434 5.03721 5.09472 5.12162 5.14864 5.15316 5.19620 5.25122 5.32848 5.40117 5.51803 5.54022 5.60402 5.64094 5.65879 5.75743 5.82474 6.10737 6.13414 6.21356 6.38188 6.40685 6.46847 6.84540 7.39702 8.92684 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.004872 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.036636 B = 5745.649527 C = 7327.620157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.070 4.070 3 H 0.045 0.955 4 C 0.012 3.988 5 C -0.510 4.510 6 H 0.033 0.967 7 C 0.005 3.995 8 N -0.955 5.955 9 Si 0.941 3.059 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.255 1.255 13 C 0.075 3.925 14 N -0.549 5.549 15 C 0.074 3.926 16 C -0.103 4.103 17 C 0.076 3.924 18 N -0.515 5.515 19 C 0.096 3.904 20 C -0.127 4.127 21 C -0.118 4.118 22 C -0.133 4.133 23 C -0.135 4.135 24 C -0.135 4.135 25 C -0.123 4.123 26 C 0.063 3.937 27 C 0.060 3.940 28 H 0.034 0.966 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.002 0.998 33 H 0.262 0.738 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.012 0.988 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.131 0.869 48 H 0.128 0.872 49 H 0.094 0.906 50 H 0.022 0.978 51 H 0.078 0.922 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.955 -7.263 18.673 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 H 0.063 0.937 4 C -0.026 4.026 5 C -0.548 4.548 6 H 0.052 0.948 7 C -0.190 4.190 8 N -0.597 5.597 9 Si 0.767 3.233 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.179 1.179 13 C -0.053 4.053 14 N -0.273 5.273 15 C -0.055 4.055 16 C -0.142 4.142 17 C -0.053 4.053 18 N -0.237 5.237 19 C -0.031 4.031 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.153 4.153 25 C -0.142 4.142 26 C -0.065 4.065 27 C -0.067 4.067 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.020 0.980 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.031 0.969 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.151 0.849 47 H 0.149 0.851 48 H 0.145 0.855 49 H 0.112 0.888 50 H 0.040 0.960 51 H 0.096 0.904 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.975 -7.056 18.455 24.791 hybrid contribution 0.105 -0.624 -1.209 1.364 sum 15.080 -7.680 17.246 24.162 Atomic orbital electron populations 1.21650 0.95205 1.01337 1.00640 1.20937 0.95178 0.98349 0.94440 0.93687 1.19343 0.96351 0.94340 0.92517 1.21573 1.33380 1.08404 0.91437 0.94820 1.25853 0.97038 1.00437 0.95719 1.70069 1.49587 1.41520 0.98548 0.85781 0.79475 0.80391 0.77702 1.19418 1.21501 1.17937 1.22129 0.86540 1.00502 0.96106 1.61346 1.09007 1.05904 1.51022 1.21651 0.96265 0.89739 0.97867 1.21965 0.95318 0.97433 0.99455 1.21592 0.98210 0.95315 0.90153 1.61990 1.05827 1.20511 1.35396 1.21433 0.88138 0.98656 0.94861 1.20877 0.98557 0.95028 0.98384 1.21310 0.99675 0.93671 0.99026 1.21448 0.98291 1.00910 0.94430 1.21447 0.99253 0.95328 0.99331 1.21431 1.00509 0.94706 0.98692 1.21313 0.98315 1.00161 0.94375 1.21167 0.92828 0.92223 1.00292 1.21162 0.95527 0.96057 0.93941 0.94640 0.92737 0.91952 0.96100 0.98000 0.92925 0.90961 0.93780 0.93287 0.93166 0.94258 0.90609 0.96940 0.91700 0.89071 0.88192 0.84804 0.84646 0.84899 0.85079 0.85457 0.88791 0.95973 0.90411 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.07 71.98 0.65 -4.13 16 2 C -0.07 -2.76 2.32 -10.79 -0.03 -2.79 16 3 H 0.04 1.90 6.74 -2.39 -0.02 1.89 16 4 C 0.01 0.58 3.45 29.85 0.10 0.69 16 5 C -0.51 -30.21 8.90 25.60 0.23 -29.99 16 6 H 0.03 2.18 7.32 -2.91 -0.02 2.16 16 7 C 0.01 0.31 5.47 84.65 0.46 0.78 16 8 N -0.96 -61.98 13.96 21.45 0.30 -61.68 16 9 Si 0.94 47.48 27.47 68.60 1.88 49.37 16 10 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 12 H -0.26 -12.51 6.54 99.48 0.65 -11.86 16 13 C 0.07 2.30 4.21 86.30 0.36 2.67 16 14 N -0.55 -16.67 3.50 -910.31 -3.19 -19.86 16 15 C 0.07 2.12 4.97 87.26 0.43 2.55 16 16 C -0.10 -2.97 6.42 31.49 0.20 -2.77 16 17 C 0.08 2.10 4.23 87.25 0.37 2.47 16 18 N -0.52 -11.43 4.48 -914.73 -4.10 -15.53 16 19 C 0.10 1.70 5.31 85.55 0.45 2.15 16 20 C -0.13 -2.61 4.31 -19.87 -0.09 -2.70 16 21 C -0.12 -2.38 8.35 22.27 0.19 -2.19 16 22 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 23 C -0.14 -2.87 10.05 22.27 0.22 -2.65 16 24 C -0.14 -2.95 10.05 22.27 0.22 -2.73 16 25 C -0.12 -2.67 8.53 22.27 0.19 -2.48 16 26 C 0.06 1.41 3.85 83.95 0.32 1.74 16 27 C 0.06 1.44 5.18 83.95 0.43 1.87 16 28 H 0.03 1.52 6.83 -2.39 -0.02 1.50 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.02 1.06 6.61 -2.39 -0.02 1.05 16 32 H 0.00 0.08 7.57 -2.38 -0.02 0.06 16 33 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 34 H 0.07 2.13 7.64 -2.38 -0.02 2.12 16 35 H 0.04 1.18 8.02 -2.39 -0.02 1.16 16 36 H 0.05 1.51 6.26 -2.38 -0.01 1.50 16 37 H 0.05 1.29 7.16 -2.39 -0.02 1.27 16 38 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.01 0.43 7.16 -2.39 -0.02 0.41 16 41 H 0.06 1.61 5.94 -2.39 -0.01 1.60 16 42 H 0.09 1.45 8.00 -2.39 -0.02 1.43 16 43 H 0.10 1.40 7.91 -2.39 -0.02 1.38 16 44 H 0.13 2.17 7.23 -2.91 -0.02 2.14 16 45 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 47 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 48 H 0.13 2.44 7.37 -2.91 -0.02 2.42 16 49 H 0.09 1.60 7.02 -2.39 -0.02 1.58 16 50 H 0.02 0.63 6.77 -2.39 -0.02 0.62 16 51 H 0.08 1.71 7.55 -2.39 -0.02 1.69 16 52 H 0.05 1.10 7.36 -2.38 -0.02 1.09 16 Total: -1.00 -70.13 386.40 0.67 -69.46 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.81 Total: 18.25 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 4.96 Total: -40.01 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -6.99 Total: -97.07 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.88 Total: 49.37 kcal Total: -70.13 0.67 -69.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429445.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.285 kcal (2) G-P(sol) polarization free energy of solvation -70.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds