Wall clock time and date at job start Tue Mar 31 2020 11:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47074 * 2 1 4 4 C 1.53006 * 109.46846 * 240.00431 * 2 1 3 5 5 C 1.50696 * 109.47409 * 64.99821 * 4 2 1 6 6 H 1.08006 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00211 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99982 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00120 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47127 * 60.00645 * 9 7 5 11 11 H 1.48506 * 109.46896 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47178 * 300.00271 * 9 7 5 13 13 C 1.52999 * 109.47235 * 120.00305 * 2 1 3 14 14 N 1.46899 * 109.46950 * 297.73397 * 13 2 1 15 15 C 1.46951 * 110.99872 * 183.87051 * 14 13 2 16 16 C 1.53055 * 109.36506 * 183.19302 * 15 14 13 17 17 N 1.46958 * 109.36174 * 301.59724 * 16 15 14 18 18 C 1.46899 * 110.99812 * 183.18864 * 17 16 15 19 19 C 1.52998 * 109.46865 * 170.00295 * 18 17 16 20 20 C 1.50703 * 109.47126 * 179.97438 * 19 18 17 21 21 C 1.38235 * 120.00130 * 90.00030 * 20 19 18 22 22 C 1.38231 * 120.00103 * 180.02562 * 21 20 19 23 23 C 1.38237 * 120.00170 * 359.97438 * 22 21 20 24 24 C 1.38232 * 119.99843 * 0.25865 * 23 22 21 25 25 C 1.38236 * 119.99949 * 359.46822 * 24 23 22 26 26 C 1.46959 * 110.87945 * 59.32376 * 17 16 15 27 27 C 1.46950 * 111.00296 * 307.67504 * 14 13 2 28 28 H 1.08992 * 109.46980 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46661 * 300.00096 * 1 2 3 30 30 H 1.09002 * 109.46952 * 59.99365 * 1 2 3 31 31 H 1.09000 * 109.46782 * 185.00087 * 4 2 1 32 32 H 1.08995 * 109.46666 * 304.99678 * 4 2 1 33 33 H 0.96995 * 119.99737 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46912 * 177.73831 * 13 2 1 35 35 H 1.08997 * 109.47124 * 57.73648 * 13 2 1 36 36 H 1.09004 * 109.48930 * 63.22848 * 15 14 13 37 37 H 1.08997 * 109.49089 * 303.16288 * 15 14 13 38 38 H 1.09000 * 109.48543 * 181.63702 * 16 15 14 39 39 H 1.08993 * 109.50533 * 61.57394 * 16 15 14 40 40 H 1.08994 * 109.47377 * 50.00021 * 18 17 16 41 41 H 1.09000 * 109.46826 * 289.99740 * 18 17 16 42 42 H 1.08998 * 109.47400 * 60.00446 * 19 18 17 43 43 H 1.08997 * 109.47522 * 299.99819 * 19 18 17 44 44 H 1.08000 * 119.99486 * 359.97438 * 21 20 19 45 45 H 1.08001 * 119.99874 * 179.97438 * 22 21 20 46 46 H 1.07994 * 119.99759 * 179.97438 * 23 22 21 47 47 H 1.07999 * 119.99847 * 179.72895 * 24 23 22 48 48 H 1.08001 * 120.00000 * 180.27702 * 25 24 23 49 49 H 1.09004 * 109.49135 * 60.64004 * 26 17 16 50 50 H 1.08994 * 109.49261 * 180.71089 * 26 17 16 51 51 H 1.08999 * 109.48886 * 296.77539 * 27 14 13 52 52 H 1.08999 * 109.49242 * 56.83923 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9931 -0.4015 -3.7283 8 7 2.6763 -1.5186 -3.8513 9 14 1.4982 0.5629 -5.2497 10 1 2.0894 1.9237 -5.1871 11 1 1.9933 -0.1371 -6.4622 12 1 0.0182 0.6684 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.5956 0.0020 2.4480 15 6 2.1439 -0.6104 3.6661 16 6 1.5951 0.1213 4.8933 17 7 1.9558 1.5437 4.8142 18 6 1.5114 2.2670 6.0130 19 6 2.1146 3.6730 6.0132 20 6 1.6581 4.4153 7.2428 21 6 2.4007 4.3473 8.4068 22 6 1.9817 5.0277 9.5347 23 6 0.8204 5.7766 9.4986 24 6 0.0752 5.8408 8.3361 25 6 0.4972 5.1649 7.2065 26 6 1.4074 2.1562 3.5960 27 6 1.9562 1.4244 2.3689 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.1263 -0.7994 -1.2057 32 1 1.6053 -1.7197 -1.2952 33 1 2.9241 -1.8411 -4.7319 34 1 3.1293 -0.7565 1.2291 35 1 1.6440 -1.7366 1.2697 36 1 3.2312 -0.5344 3.6536 37 1 1.8528 -1.6599 3.7082 38 1 2.0232 -0.3127 5.7969 39 1 0.5100 0.0223 4.9209 40 1 1.8394 1.7307 6.9034 41 1 0.4237 2.3383 6.0119 42 1 1.7864 4.2094 5.1229 43 1 3.2022 3.6019 6.0143 44 1 3.3078 3.7618 8.4350 45 1 2.5617 4.9741 10.4442 46 1 0.4929 6.3078 10.3800 47 1 -0.8344 6.4223 8.3092 48 1 -0.0827 5.2187 6.2969 49 1 0.3201 2.0802 3.6086 50 1 1.6985 3.2057 3.5539 51 1 3.0413 1.5235 2.3416 52 1 1.5283 1.8584 1.4652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602429507.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:04 Heat of formation + Delta-G solvation = 17.091319 kcal Electronic energy + Delta-G solvation = -25979.469097 eV Core-core repulsion = 22556.842269 eV Total energy + Delta-G solvation = -3422.626828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80877 -39.17958 -36.70223 -34.47145 -33.01617 -31.85049 -31.19136 -30.83246 -29.13325 -27.03200 -26.42290 -24.52962 -23.69811 -22.87706 -22.84466 -22.03684 -20.90295 -19.78139 -18.67709 -17.13826 -16.57170 -16.08420 -15.75313 -15.37422 -14.96756 -14.86518 -14.61283 -14.60669 -14.37221 -14.09771 -13.82003 -13.63656 -13.22104 -13.09805 -12.91023 -12.55372 -12.19950 -12.09736 -11.90574 -11.66989 -11.46980 -11.32465 -11.28198 -11.16213 -11.06682 -10.83385 -10.80200 -10.73293 -10.58077 -10.27818 -10.14276 -9.56448 -9.22846 -9.12941 -8.99815 -8.92267 -8.44843 -8.30805 -7.96493 -5.95856 -3.97017 1.04367 1.09452 3.35312 3.39707 3.42061 3.44655 3.77516 4.18878 4.49591 4.52226 4.59043 4.70147 4.80271 4.83953 4.93323 4.98825 5.14873 5.21561 5.23799 5.32581 5.35659 5.39798 5.42722 5.48245 5.57715 5.61422 5.69523 5.74530 5.77390 5.81198 5.88227 5.92924 5.99676 6.11248 6.15188 6.17434 6.19273 6.20876 6.35976 6.44520 6.55621 6.67776 6.70400 6.91195 6.95385 7.04465 7.15683 7.21955 7.42709 7.46991 7.71026 7.87237 8.04220 8.48112 9.08994 9.66118 11.15593 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.002035 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.427181 B =13757.346913 C =14451.090267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.086 4.086 3 H 0.057 0.943 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.062 3.938 14 N -0.537 5.537 15 C 0.056 3.944 16 C 0.061 3.939 17 N -0.541 5.541 18 C 0.064 3.936 19 C -0.080 4.080 20 C -0.078 4.078 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.117 4.117 26 C 0.056 3.944 27 C 0.052 3.948 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.041 0.959 50 H 0.077 0.923 51 H 0.038 0.962 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 10.852 26.968 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.105 4.105 3 H 0.076 0.924 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.261 5.261 15 C -0.072 4.072 16 C -0.067 4.067 17 N -0.266 5.266 18 C -0.064 4.064 19 C -0.117 4.117 20 C -0.078 4.078 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.135 4.135 26 C -0.072 4.072 27 C -0.076 4.076 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.059 0.941 50 H 0.095 0.905 51 H 0.057 0.943 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.507 10.710 26.827 28.994 hybrid contribution -0.203 0.429 -0.877 0.997 sum -2.710 11.139 25.950 28.369 Atomic orbital electron populations 1.21586 0.95727 1.00688 0.99966 1.21313 0.95976 0.99104 0.94080 0.92448 1.19111 0.95919 0.95561 0.90374 1.21186 1.34617 1.08276 0.90996 0.92675 1.25021 0.95365 0.95107 0.99075 1.69957 1.39022 1.21202 1.23447 0.86693 0.78877 0.80097 0.82525 1.20327 1.21391 1.20300 1.22292 0.97196 0.97851 0.89201 1.62227 1.59331 1.02289 1.02290 1.22115 0.97458 0.98064 0.89609 1.22124 0.98805 0.87760 0.98033 1.62168 1.59744 1.02544 1.02112 1.22018 0.97444 0.93737 0.93184 1.20631 1.01759 0.94425 0.94896 1.19920 0.95055 0.97402 0.95442 1.21098 0.99967 0.99705 0.92646 1.21157 0.96820 0.97471 0.98330 1.21147 0.95591 0.99704 0.98124 1.21158 0.99779 0.99576 0.93197 1.21109 0.96326 0.97472 0.98593 1.22248 0.97524 0.98173 0.89246 1.22232 0.98740 0.88950 0.97655 0.94056 0.94125 0.92796 0.96932 0.96569 0.93065 0.95379 0.91202 0.94335 0.90560 0.90768 0.94117 0.90882 0.94774 0.90737 0.90044 0.85999 0.86176 0.86288 0.86162 0.86112 0.94103 0.90454 0.94350 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.80 37.16 0.33 -2.05 16 2 C -0.09 -1.76 1.86 -90.62 -0.17 -1.93 16 3 H 0.06 1.18 6.11 -51.93 -0.32 0.86 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.36 8.41 -34.44 -0.29 -14.65 16 6 H 0.06 1.50 7.06 -52.48 -0.37 1.13 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.09 4.55 -3.82 -0.02 1.07 16 14 N -0.54 -8.12 4.15 -234.47 -0.97 -9.10 16 15 C 0.06 0.73 5.62 -3.77 -0.02 0.71 16 16 C 0.06 0.68 5.61 -3.76 -0.02 0.66 16 17 N -0.54 -6.05 4.71 -234.47 -1.10 -7.16 16 18 C 0.06 0.60 4.94 -3.83 -0.02 0.58 16 19 C -0.08 -0.68 5.28 -27.88 -0.15 -0.83 16 20 C -0.08 -0.66 5.13 -104.62 -0.54 -1.20 16 21 C -0.12 -0.93 9.70 -39.58 -0.38 -1.32 16 22 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 23 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 26 C 0.06 0.67 5.41 -3.76 -0.02 0.65 16 27 C 0.05 0.75 5.12 -3.77 -0.02 0.73 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.71 7.62 -51.93 -0.40 0.31 16 30 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.65 8.03 -51.93 -0.42 0.23 16 41 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 42 H 0.07 0.64 6.44 -51.93 -0.33 0.31 16 43 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.82 6.34 -51.93 -0.33 0.49 16 51 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.09 1.38 5.87 -51.93 -0.30 1.08 16 LS Contribution 401.87 15.07 6.06 6.06 Total: -1.00 -30.19 401.87 -12.99 -43.18 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -9.57 Total: -2.63 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -3.12 Total: -20.78 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -1.34 Total: -42.57 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.19 -12.99 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429507.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.270 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds