Wall clock time and date at job start Tue Mar 31 2020 11:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47074 * 2 1 4 4 C 1.53006 * 109.46846 * 240.00431 * 2 1 3 5 5 C 1.50696 * 109.47409 * 64.99821 * 4 2 1 6 6 H 1.08006 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00211 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99982 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00120 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47127 * 60.00645 * 9 7 5 11 11 H 1.48506 * 109.46896 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47178 * 300.00271 * 9 7 5 13 13 C 1.52999 * 109.47235 * 120.00305 * 2 1 3 14 14 N 1.46899 * 109.46950 * 297.73397 * 13 2 1 15 15 C 1.46951 * 110.99872 * 183.87051 * 14 13 2 16 16 C 1.53055 * 109.36506 * 183.19302 * 15 14 13 17 17 N 1.46958 * 109.36174 * 301.59724 * 16 15 14 18 18 C 1.46899 * 110.99812 * 183.18864 * 17 16 15 19 19 C 1.52998 * 109.46865 * 170.00295 * 18 17 16 20 20 C 1.50703 * 109.47126 * 179.97438 * 19 18 17 21 21 C 1.38235 * 120.00130 * 90.00030 * 20 19 18 22 22 C 1.38231 * 120.00103 * 180.02562 * 21 20 19 23 23 C 1.38237 * 120.00170 * 359.97438 * 22 21 20 24 24 C 1.38232 * 119.99843 * 0.25865 * 23 22 21 25 25 C 1.38236 * 119.99949 * 359.46822 * 24 23 22 26 26 C 1.46959 * 110.87945 * 59.32376 * 17 16 15 27 27 C 1.46950 * 111.00296 * 307.67504 * 14 13 2 28 28 H 1.08992 * 109.46980 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46661 * 300.00096 * 1 2 3 30 30 H 1.09002 * 109.46952 * 59.99365 * 1 2 3 31 31 H 1.09000 * 109.46782 * 185.00087 * 4 2 1 32 32 H 1.08995 * 109.46666 * 304.99678 * 4 2 1 33 33 H 0.96995 * 119.99737 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46912 * 177.73831 * 13 2 1 35 35 H 1.08997 * 109.47124 * 57.73648 * 13 2 1 36 36 H 1.09004 * 109.48930 * 63.22848 * 15 14 13 37 37 H 1.08997 * 109.49089 * 303.16288 * 15 14 13 38 38 H 1.09000 * 109.48543 * 181.63702 * 16 15 14 39 39 H 1.08993 * 109.50533 * 61.57394 * 16 15 14 40 40 H 1.08994 * 109.47377 * 50.00021 * 18 17 16 41 41 H 1.09000 * 109.46826 * 289.99740 * 18 17 16 42 42 H 1.08998 * 109.47400 * 60.00446 * 19 18 17 43 43 H 1.08997 * 109.47522 * 299.99819 * 19 18 17 44 44 H 1.08000 * 119.99486 * 359.97438 * 21 20 19 45 45 H 1.08001 * 119.99874 * 179.97438 * 22 21 20 46 46 H 1.07994 * 119.99759 * 179.97438 * 23 22 21 47 47 H 1.07999 * 119.99847 * 179.72895 * 24 23 22 48 48 H 1.08001 * 120.00000 * 180.27702 * 25 24 23 49 49 H 1.09004 * 109.49135 * 60.64004 * 26 17 16 50 50 H 1.08994 * 109.49261 * 180.71089 * 26 17 16 51 51 H 1.08999 * 109.48886 * 296.77539 * 27 14 13 52 52 H 1.08999 * 109.49242 * 56.83923 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9931 -0.4015 -3.7283 8 7 2.6763 -1.5186 -3.8513 9 14 1.4982 0.5629 -5.2497 10 1 2.0894 1.9237 -5.1871 11 1 1.9933 -0.1371 -6.4622 12 1 0.0182 0.6684 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.5956 0.0020 2.4480 15 6 2.1439 -0.6104 3.6661 16 6 1.5951 0.1213 4.8933 17 7 1.9558 1.5437 4.8142 18 6 1.5114 2.2670 6.0130 19 6 2.1146 3.6730 6.0132 20 6 1.6581 4.4153 7.2428 21 6 2.4007 4.3473 8.4068 22 6 1.9817 5.0277 9.5347 23 6 0.8204 5.7766 9.4986 24 6 0.0752 5.8408 8.3361 25 6 0.4972 5.1649 7.2065 26 6 1.4074 2.1562 3.5960 27 6 1.9562 1.4244 2.3689 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.1263 -0.7994 -1.2057 32 1 1.6053 -1.7197 -1.2952 33 1 2.9241 -1.8411 -4.7319 34 1 3.1293 -0.7565 1.2291 35 1 1.6440 -1.7366 1.2697 36 1 3.2312 -0.5344 3.6536 37 1 1.8528 -1.6599 3.7082 38 1 2.0232 -0.3127 5.7969 39 1 0.5100 0.0223 4.9209 40 1 1.8394 1.7307 6.9034 41 1 0.4237 2.3383 6.0119 42 1 1.7864 4.2094 5.1229 43 1 3.2022 3.6019 6.0143 44 1 3.3078 3.7618 8.4350 45 1 2.5617 4.9741 10.4442 46 1 0.4929 6.3078 10.3800 47 1 -0.8344 6.4223 8.3092 48 1 -0.0827 5.2187 6.2969 49 1 0.3201 2.0802 3.6086 50 1 1.6985 3.2057 3.5539 51 1 3.0413 1.5235 2.3416 52 1 1.5283 1.8584 1.4652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602429507.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:04 Heat of formation + Delta-G solvation = 1.343907 kcal Electronic energy + Delta-G solvation = -25980.151956 eV Core-core repulsion = 22556.842269 eV Total energy + Delta-G solvation = -3423.309687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.64600 -40.00481 -37.96417 -35.89889 -34.35891 -33.35823 -31.88833 -31.72899 -30.08908 -28.81169 -27.66430 -25.97303 -24.79306 -24.20126 -23.41923 -23.20846 -21.56065 -20.94204 -20.23788 -18.53486 -17.73096 -17.24277 -16.58338 -16.45325 -16.08904 -16.00089 -15.83140 -15.74354 -15.55369 -15.21195 -14.96089 -14.37098 -14.26118 -14.14181 -13.95153 -13.75549 -13.63558 -13.32198 -13.13135 -12.93436 -12.77624 -12.70314 -12.57654 -12.27495 -12.21922 -12.17785 -12.04700 -11.93999 -11.83336 -11.65963 -11.48809 -11.33955 -11.03726 -10.83840 -10.51815 -9.78996 -9.58912 -9.36358 -9.18859 -8.16571 -6.25763 0.47243 0.53309 1.40396 1.43224 1.50797 2.42392 2.80473 2.96704 3.01100 3.16644 3.87234 3.90215 3.99972 4.03567 4.09311 4.20115 4.20891 4.28418 4.29509 4.34041 4.42368 4.48961 4.51438 4.54706 4.58142 4.66288 4.68742 4.70495 4.84705 4.87535 4.89779 4.95501 4.96395 4.99697 5.06366 5.07907 5.14031 5.22256 5.27467 5.28685 5.46483 5.49731 5.54993 5.61307 5.66373 5.76621 5.80644 5.88762 5.99405 6.02119 6.16557 6.19529 6.23319 6.32495 6.89738 7.42254 8.95221 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.002035 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.427181 B =13757.346913 C =14451.090267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 H 0.057 0.943 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.074 3.926 14 N -0.537 5.537 15 C 0.055 3.945 16 C 0.066 3.934 17 N -0.548 5.548 18 C 0.071 3.929 19 C -0.072 4.072 20 C -0.089 4.089 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.131 4.131 26 C 0.065 3.935 27 C 0.053 3.947 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.038 0.962 31 H -0.016 1.016 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.017 0.983 35 H 0.068 0.932 36 H 0.032 0.968 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.038 0.962 40 H 0.080 0.920 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.130 0.870 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.125 0.875 49 H 0.038 0.962 50 H 0.091 0.909 51 H 0.027 0.973 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 12.333 28.511 31.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.054 4.054 14 N -0.261 5.261 15 C -0.073 4.073 16 C -0.062 4.062 17 N -0.273 5.273 18 C -0.057 4.057 19 C -0.109 4.109 20 C -0.090 4.090 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.146 4.146 25 C -0.149 4.149 26 C -0.064 4.064 27 C -0.075 4.075 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.002 0.998 32 H 0.009 0.991 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.148 0.852 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.153 0.847 48 H 0.143 0.857 49 H 0.056 0.944 50 H 0.109 0.891 51 H 0.046 0.954 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.399 12.205 28.394 31.092 hybrid contribution 0.102 -0.038 -1.286 1.291 sum -3.297 12.167 27.108 29.895 Atomic orbital electron populations 1.21460 0.94538 1.00483 1.00314 1.21113 0.96779 0.98549 0.93026 0.92474 1.18999 0.93983 0.94726 0.92704 1.21589 1.34432 1.08592 0.92008 0.92067 1.25962 0.95299 0.96126 1.02668 1.70099 1.40239 1.22927 1.24291 0.85559 0.78926 0.78766 0.78151 1.19240 1.21083 1.19225 1.22018 0.96337 0.97681 0.89387 1.62223 1.59319 1.02621 1.01979 1.22204 0.97089 0.98793 0.89230 1.22103 0.98643 0.87712 0.97741 1.62175 1.59903 1.02707 1.02469 1.21994 0.97280 0.93977 0.92427 1.20531 1.01427 0.93955 0.95005 1.19968 0.95485 0.97923 0.95598 1.21297 1.00354 1.00073 0.92786 1.21447 0.97083 0.97107 0.98862 1.21461 0.95461 0.99571 0.98737 1.21426 1.00467 0.99592 0.93150 1.21284 0.96549 0.97852 0.99210 1.22144 0.97120 0.98551 0.88535 1.22227 0.98103 0.88609 0.98606 0.94499 0.91792 0.94256 0.99773 0.99135 0.92983 0.96487 0.91378 0.95002 0.89727 0.88735 0.94336 0.90183 0.94999 0.90945 0.90342 0.85166 0.84395 0.84395 0.84657 0.85672 0.94378 0.89097 0.95433 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.25 8.80 71.98 0.63 -3.62 16 2 C -0.08 -3.15 1.86 -10.79 -0.02 -3.17 16 3 H 0.06 2.37 6.11 -2.39 -0.01 2.36 16 4 C 0.03 1.78 4.45 29.85 0.13 1.91 16 5 C -0.53 -30.06 8.41 25.60 0.22 -29.84 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 C 0.07 2.62 4.55 86.30 0.39 3.01 16 14 N -0.54 -15.85 4.15 -895.74 -3.72 -19.56 16 15 C 0.05 1.36 5.62 86.31 0.48 1.84 16 16 C 0.07 1.35 5.61 86.31 0.48 1.83 16 17 N -0.55 -11.28 4.71 -895.71 -4.22 -15.50 16 18 C 0.07 1.19 4.94 86.30 0.43 1.61 16 19 C -0.07 -1.12 5.28 29.85 0.16 -0.97 16 20 C -0.09 -1.41 5.13 -19.86 -0.10 -1.52 16 21 C -0.13 -1.86 9.70 22.27 0.22 -1.64 16 22 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 23 C -0.13 -1.71 10.05 22.27 0.22 -1.48 16 24 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 25 C -0.13 -2.02 9.70 22.27 0.22 -1.81 16 26 C 0.06 1.44 5.41 86.31 0.47 1.91 16 27 C 0.05 1.47 5.12 86.31 0.44 1.92 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 2.15 7.62 -2.39 -0.02 2.13 16 30 H 0.04 1.60 6.95 -2.39 -0.02 1.58 16 31 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.09 1.57 8.07 -2.39 -0.02 1.55 16 39 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.25 8.03 -2.39 -0.02 1.23 16 41 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 42 H 0.07 1.15 6.44 -2.39 -0.02 1.14 16 43 H 0.08 1.27 8.09 -2.39 -0.02 1.26 16 44 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 45 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 46 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 47 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 48 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 49 H 0.04 0.88 8.14 -2.38 -0.02 0.87 16 50 H 0.09 1.79 6.34 -2.39 -0.02 1.77 16 51 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.08 2.38 5.87 -2.39 -0.01 2.37 16 Total: -1.00 -65.00 401.87 0.50 -64.49 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.85 Total: 13.83 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 5.28 Total: -32.71 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -7.65 Total: -92.40 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -65.00 0.50 -64.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429507.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.837 kcal (2) G-P(sol) polarization free energy of solvation -64.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds