Wall clock time and date at job start Tue Mar 31 2020 11:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47020 * 2 1 4 4 C 1.53005 * 109.46812 * 119.99912 * 2 1 3 5 5 C 1.50696 * 109.47232 * 294.99811 * 4 2 1 6 6 H 1.08003 * 120.00326 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99848 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00481 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99819 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47311 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47229 * 120.00275 * 9 7 5 12 12 H 1.48499 * 109.47392 * 240.00059 * 9 7 5 13 13 C 1.53002 * 109.47058 * 239.99883 * 2 1 3 14 14 N 1.46898 * 109.47010 * 65.00204 * 13 2 1 15 15 C 1.46904 * 110.99950 * 66.04706 * 14 13 2 16 16 C 1.46900 * 111.00044 * 189.99655 * 14 13 2 17 17 C 1.50695 * 109.47278 * 163.21540 * 16 14 13 18 18 C 1.38122 * 120.04274 * 259.12975 * 17 16 14 19 19 C 1.38264 * 120.07839 * 180.27566 * 18 17 16 20 20 C 1.38312 * 120.14730 * 359.70276 * 19 18 17 21 21 C 1.38074 * 120.07333 * 0.02562 * 20 19 18 22 22 C 1.38895 * 120.03798 * 78.85260 * 17 16 14 23 23 N 1.39680 * 120.06966 * 0.02562 * 22 17 16 24 24 C 1.48531 * 110.99601 * 97.53324 * 23 22 17 25 25 C 1.54940 * 103.22474 * 159.71765 * 24 23 22 26 26 C 1.54597 * 102.92372 * 322.58427 * 25 24 23 27 27 C 1.47898 * 110.99829 * 214.92732 * 23 22 17 28 28 H 1.09001 * 109.47327 * 59.99708 * 1 2 3 29 29 H 1.09004 * 109.47482 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47132 * 299.99953 * 1 2 3 31 31 H 1.09000 * 109.46749 * 55.00197 * 4 2 1 32 32 H 1.08998 * 109.46674 * 175.00089 * 4 2 1 33 33 H 0.96999 * 120.00562 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.46945 * 305.00311 * 13 2 1 35 35 H 1.09003 * 109.46450 * 185.00165 * 13 2 1 36 36 H 1.08998 * 109.47022 * 192.18878 * 15 14 13 37 37 H 1.09002 * 109.47012 * 312.18310 * 15 14 13 38 38 H 1.08998 * 109.47432 * 72.18210 * 15 14 13 39 39 H 1.09003 * 109.46837 * 43.21704 * 16 14 13 40 40 H 1.08990 * 109.46955 * 283.22079 * 16 14 13 41 41 H 1.08001 * 119.96249 * 359.97438 * 18 17 16 42 42 H 1.07997 * 119.92752 * 179.71890 * 19 18 17 43 43 H 1.08001 * 119.95677 * 179.97438 * 20 19 18 44 44 H 1.08001 * 120.03740 * 179.97438 * 21 20 19 45 45 H 1.09001 * 110.66954 * 278.14844 * 24 23 22 46 46 H 1.08995 * 110.67279 * 41.28208 * 24 23 22 47 47 H 1.08995 * 110.72585 * 204.22281 * 25 24 23 48 48 H 1.09008 * 110.72105 * 80.94233 * 25 24 23 49 49 H 1.08997 * 110.30575 * 263.04008 * 26 25 24 50 50 H 1.08994 * 110.30839 * 140.87117 * 26 25 24 51 51 H 1.09003 * 109.91596 * 333.51047 * 27 23 22 52 52 H 1.09003 * 109.92164 * 94.80451 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3758 7 6 1.9923 -0.4023 3.7283 8 7 2.6753 -1.5193 3.8513 9 14 1.4975 0.5621 5.2497 10 1 0.7402 1.7732 4.8435 11 1 0.6431 -0.2872 6.1181 12 1 2.7152 0.9667 5.9971 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.3342 1.3374 -2.4894 16 6 1.9125 -0.7357 -3.6671 17 6 1.1465 -0.1331 -4.8164 18 6 -0.0361 -0.7096 -5.2372 19 6 -0.7366 -0.1606 -6.2953 20 6 -0.2593 0.9707 -6.9320 21 6 0.9192 1.5553 -6.5128 22 6 1.6258 1.0061 -5.4502 23 7 2.8186 1.5948 -5.0238 24 6 3.9588 1.1607 -5.8710 25 6 5.0235 2.2584 -5.6218 26 6 4.1748 3.5466 -5.5202 27 6 2.7585 3.0670 -5.1520 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6053 -1.7198 1.2951 32 1 3.1262 -0.7995 1.2056 33 1 2.9219 -1.8427 4.7319 34 1 1.6053 -1.7198 -1.2951 35 1 3.1263 -0.7995 -1.2055 36 1 1.8753 1.9632 -3.2548 37 1 2.2464 1.8267 -1.5194 38 1 3.3874 1.1868 -2.7264 39 1 1.5936 -1.7675 -3.5192 40 1 2.9791 -0.7136 -3.8900 41 1 -0.4115 -1.5931 -4.7423 42 1 -1.6586 -0.6160 -6.6252 43 1 -0.8088 1.3967 -7.7585 44 1 1.2916 2.4385 -7.0107 45 1 4.3279 0.1868 -5.5497 46 1 3.6700 1.1363 -6.9217 47 1 5.7181 2.3193 -6.4596 48 1 5.5572 2.0735 -4.6895 49 1 4.1611 4.0671 -6.4777 50 1 4.5682 4.1982 -4.7400 51 1 2.0567 3.3428 -5.9392 52 1 2.4510 3.5100 -4.2047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602436273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:38 Heat of formation + Delta-G solvation = 43.627784 kcal Electronic energy + Delta-G solvation = -27420.769181 eV Core-core repulsion = 23999.293060 eV Total energy + Delta-G solvation = -3421.476121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72608 -38.00925 -37.33263 -34.40073 -32.77465 -32.18556 -31.13540 -29.18047 -28.74599 -26.95378 -26.60681 -25.91989 -23.64666 -23.35087 -21.91661 -21.32983 -20.62553 -20.35964 -18.70479 -17.42336 -16.43898 -16.30221 -15.78222 -15.29558 -15.24097 -14.60781 -14.53798 -14.19024 -14.07232 -13.91262 -13.44876 -13.34663 -13.06612 -12.57071 -12.37002 -12.35335 -12.21166 -12.11281 -11.77557 -11.54762 -11.43984 -11.37304 -11.27345 -11.09662 -10.99400 -10.91735 -10.79242 -10.65037 -10.53801 -10.20171 -10.11632 -9.47704 -9.12062 -9.04794 -8.89918 -8.76721 -8.28126 -8.26353 -7.69752 -5.91575 -3.91985 1.21842 1.31630 3.35961 3.43370 3.47966 3.58937 3.70687 4.38715 4.48684 4.53103 4.64365 4.66983 4.74982 4.84940 4.94429 5.04296 5.22311 5.24827 5.29089 5.44264 5.47700 5.48945 5.55991 5.58160 5.63469 5.71247 5.74157 5.79648 5.81205 5.89859 5.99132 6.05702 6.17901 6.26511 6.27528 6.31616 6.39681 6.50696 6.52981 6.56251 6.68986 6.70835 6.79587 6.85765 7.15302 7.26233 7.28314 7.33866 7.61262 7.68250 7.78839 7.95568 8.09898 8.54830 9.14866 9.71024 11.20076 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.003028 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.592967 B = 9243.794196 C =10138.150500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.508 4.508 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.061 3.939 14 N -0.530 5.530 15 C 0.036 3.964 16 C 0.102 3.898 17 C -0.048 4.048 18 C -0.095 4.095 19 C -0.128 4.128 20 C -0.114 4.114 21 C -0.161 4.161 22 C 0.090 3.910 23 N -0.469 5.469 24 C 0.039 3.961 25 C -0.123 4.123 26 C -0.130 4.130 27 C 0.025 3.975 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.015 0.985 32 H 0.011 0.989 33 H 0.258 0.742 34 H 0.064 0.936 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.057 0.943 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 6.202 -25.764 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.547 4.547 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.066 4.066 14 N -0.254 5.254 15 C -0.112 4.112 16 C -0.026 4.026 17 C -0.050 4.050 18 C -0.114 4.114 19 C -0.146 4.146 20 C -0.133 4.133 21 C -0.180 4.180 22 C -0.005 4.005 23 N -0.189 5.189 24 C -0.087 4.087 25 C -0.161 4.161 26 C -0.168 4.168 27 C -0.101 4.101 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.075 0.925 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.335 6.024 -25.043 25.760 hybrid contribution 0.424 0.554 0.083 0.702 sum 0.089 6.578 -24.960 25.812 Atomic orbital electron populations 1.21560 0.95914 1.00309 1.00022 1.21222 0.95829 0.99119 0.93708 0.92528 1.19128 0.95838 0.95521 0.90558 1.21291 1.34210 1.08194 0.90995 0.92565 1.25018 0.95434 0.95110 0.99050 1.69977 1.39370 1.21304 1.23141 0.86595 0.78211 0.80174 0.83386 1.19756 1.21139 1.21166 1.22307 0.97378 0.97012 0.89874 1.62026 1.58460 1.04239 1.00670 1.22639 0.96364 0.91137 1.01028 1.20874 0.97062 0.96235 0.88418 1.19680 0.95020 0.94651 0.95663 1.21027 0.93943 1.00142 0.96335 1.21122 1.00046 0.96592 0.96842 1.20934 0.96145 0.96229 0.99985 1.21495 0.97467 1.01571 0.97514 1.18812 0.92625 0.95321 0.93719 1.62795 1.01784 1.05491 1.48863 1.23297 0.90705 0.99546 0.95125 1.22489 0.97164 0.94000 1.02424 1.22384 0.94785 0.97921 1.01700 1.23144 0.97262 0.87564 1.02176 0.93945 0.94379 0.93013 0.96686 0.97027 0.93242 0.91779 0.95641 0.90875 0.92643 0.95379 0.91085 0.93859 0.85690 0.86221 0.86504 0.86172 0.89917 0.93504 0.91047 0.90426 0.91630 0.90710 0.92520 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.89 37.16 0.33 -2.14 16 2 C -0.08 -1.71 2.28 -90.62 -0.21 -1.92 16 3 H 0.06 1.25 6.14 -51.93 -0.32 0.93 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.57 8.41 -34.44 -0.29 -14.86 16 6 H 0.06 1.58 7.06 -52.48 -0.37 1.21 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 9 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.06 1.13 4.34 -3.82 -0.02 1.11 16 14 N -0.53 -8.50 4.16 -244.38 -1.02 -9.52 16 15 C 0.04 0.56 7.88 60.07 0.47 1.03 16 16 C 0.10 1.40 5.01 -4.98 -0.02 1.38 16 17 C -0.05 -0.61 5.31 -104.42 -0.55 -1.17 16 18 C -0.10 -1.10 9.66 -39.61 -0.38 -1.48 16 19 C -0.13 -1.29 10.04 -39.54 -0.40 -1.69 16 20 C -0.11 -1.11 10.04 -39.61 -0.40 -1.51 16 21 C -0.16 -1.66 8.77 -39.39 -0.35 -2.00 16 22 C 0.09 1.05 3.94 -83.78 -0.33 0.72 16 23 N -0.47 -5.01 1.49 -167.16 -0.25 -5.26 16 24 C 0.04 0.36 6.48 -1.90 -0.01 0.34 16 25 C -0.12 -0.96 7.06 -24.87 -0.18 -1.13 16 26 C -0.13 -0.98 6.93 -25.37 -0.18 -1.16 16 27 C 0.03 0.23 5.90 -2.75 -0.02 0.22 16 28 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 31 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.06 1.17 7.85 -51.93 -0.41 0.76 16 35 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.07 1.07 3.84 -51.93 -0.20 0.87 16 37 H 0.05 0.94 5.95 -51.93 -0.31 0.63 16 38 H 0.03 0.43 7.42 -51.93 -0.39 0.04 16 39 H 0.07 0.94 7.64 -51.93 -0.40 0.54 16 40 H 0.04 0.60 7.28 -51.93 -0.38 0.22 16 41 H 0.13 1.32 8.03 -52.49 -0.42 0.90 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 1.06 6.10 -52.49 -0.32 0.74 16 45 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 46 H 0.05 0.42 7.88 -51.93 -0.41 0.01 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.06 0.49 5.13 -51.93 -0.27 0.23 16 52 H 0.09 0.88 7.06 -51.93 -0.37 0.51 16 LS Contribution 390.10 15.07 5.88 5.88 Total: -1.00 -30.80 390.10 -11.50 -42.29 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -9.08 Total: -1.55 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -2.74 Total: -22.20 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.53 Total: -41.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.80 -11.50 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602436273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.921 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds